Wall clock time and date at job start Mon Mar 30 2020 04:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 O 1.21282 * 120.00038 * 119.99602 * 12 2 1 14 14 N 1.34779 * 120.00040 * 300.00473 * 12 2 1 15 15 C 1.46500 * 120.00169 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47368 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.57064 * 300.25624 * 16 15 14 18 18 C 1.53093 * 109.57658 * 180.02562 * 16 15 14 19 19 C 1.52588 * 109.95445 * 177.16910 * 18 16 15 20 20 C 1.52577 * 110.72720 * 70.67394 * 19 18 16 21 21 C 1.53101 * 109.95409 * 289.32444 * 20 19 18 22 22 S 1.81740 * 108.84156 * 63.02674 * 21 20 19 23 23 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 25 25 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 28 28 H 1.09004 * 109.46923 * 300.00119 * 15 14 12 29 29 H 1.09004 * 109.47042 * 59.99705 * 15 14 12 30 30 H 1.08998 * 109.38862 * 297.30949 * 18 16 15 31 31 H 1.08998 * 109.38923 * 57.01866 * 18 16 15 32 32 H 1.09000 * 109.22343 * 190.99661 * 19 18 16 33 33 H 1.09001 * 109.22326 * 310.35034 * 19 18 16 34 34 H 1.08998 * 109.39456 * 49.47221 * 20 19 18 35 35 H 1.08998 * 109.39147 * 169.17778 * 20 19 18 36 36 H 1.09004 * 109.57080 * 182.83621 * 21 20 19 37 37 H 1.09003 * 109.57557 * 303.08640 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1948 -0.9409 3.6507 16 6 1.6854 -0.2194 4.9000 17 1 2.0448 0.8097 4.8993 18 6 2.1946 -0.9391 6.1515 19 6 1.7500 -0.1865 7.4022 20 6 0.2458 -0.3312 7.6134 21 6 -0.5105 0.4658 6.5472 22 16 -0.1320 -0.2337 4.9130 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.9026 -0.5282 -4.4376 27 1 1.1494 0.5388 2.5436 28 1 1.8311 -1.9685 3.6505 29 1 3.2848 -0.9413 3.6508 30 1 1.7913 -1.9515 6.1760 31 1 3.2832 -0.9853 6.1248 32 1 2.2745 -0.5891 8.2688 33 1 1.9972 0.8694 7.2926 34 1 -0.0301 -1.3832 7.5423 35 1 -0.0187 0.0449 8.6017 36 1 -1.5824 0.3994 6.7336 37 1 -0.1979 1.5095 6.5812 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597492079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:15 Heat of formation + Delta-G solvation = -54.491072 kcal Electronic energy + Delta-G solvation = -17253.902360 eV Core-core repulsion = 14542.670209 eV Total energy + Delta-G solvation = -2711.232151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.98612 -37.34247 -34.72329 -33.74989 -31.87383 -30.94535 -28.28639 -25.08954 -25.05795 -22.71643 -21.79752 -21.04645 -19.25684 -17.22394 -16.69267 -16.15008 -15.53431 -15.25591 -14.99789 -14.45159 -14.29116 -13.97860 -13.74387 -13.11600 -12.93053 -12.78816 -12.54706 -12.20550 -12.06136 -11.64059 -11.58321 -11.44503 -11.25881 -10.89264 -10.66592 -10.53957 -10.22713 -9.81690 -9.57709 -9.03758 -8.65466 -8.54536 -8.48577 -7.80753 -5.99979 -3.99762 1.52824 2.34781 3.28452 3.35867 3.40650 3.64865 3.75068 4.35180 4.38134 4.43048 4.51992 4.68156 4.81741 4.90113 5.09958 5.26426 5.29913 5.31677 5.49278 5.57559 5.62758 5.70786 5.71988 5.80136 5.92927 6.04920 6.21821 6.41425 6.53534 6.80083 6.97826 7.24121 7.60802 8.18071 8.61130 9.14239 9.21228 9.59456 11.13089 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.040809 B = 0.004728 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.960015 B = 5920.917930 C = 6395.838995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.005 4.005 3 H 0.051 0.949 4 C -0.504 4.504 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.267 1.267 11 H -0.296 1.296 12 C 0.529 3.471 13 O -0.533 6.533 14 N -0.746 5.746 15 C 0.140 3.860 16 C -0.063 4.063 17 H 0.093 0.907 18 C -0.116 4.116 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.090 4.090 22 S -0.243 6.243 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.048 0.952 26 H 0.264 0.736 27 H 0.398 0.602 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 5.045 23.728 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 H 0.069 0.931 4 C -0.542 4.542 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.224 1.224 12 C 0.317 3.683 13 O -0.407 6.407 14 N -0.401 5.401 15 C 0.015 3.985 16 C -0.192 4.192 17 H 0.111 0.889 18 C -0.156 4.156 19 C -0.165 4.165 20 C -0.161 4.161 21 C -0.239 4.239 22 S -0.016 6.016 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.233 0.767 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.573 3.961 22.622 23.417 hybrid contribution -0.149 1.702 0.781 1.879 sum -4.723 5.663 23.403 24.537 Atomic orbital electron populations 1.22097 0.97213 1.01538 0.99252 1.19305 0.93299 0.97475 0.92546 0.93110 1.20955 1.31966 1.14044 0.87262 0.88914 1.24980 0.95842 0.96591 0.95755 1.69891 1.45609 1.40236 0.97833 0.86904 0.80753 0.83848 0.76979 1.20506 1.19255 1.22393 1.21267 0.78824 0.84276 0.83899 1.90578 1.37328 1.26300 1.86537 1.46273 1.55609 1.32894 1.05349 1.21004 0.99038 0.96411 0.82088 1.23555 0.93781 1.03373 0.98511 0.88887 1.21731 1.01704 1.00036 0.92090 1.21516 0.95869 1.00969 0.98185 1.21719 0.94961 1.01236 0.98149 1.23478 1.03980 1.01791 0.94636 1.87366 1.07243 1.84276 1.22746 0.92406 0.94629 0.93395 0.92629 0.76699 0.91013 0.90619 0.90177 0.90377 0.90948 0.91774 0.90525 0.91045 0.87916 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.57 37.16 0.32 -2.77 16 2 C 0.00 -0.11 2.23 -92.92 -0.21 -0.32 16 3 H 0.05 1.19 7.20 -51.93 -0.37 0.81 16 4 C -0.50 -14.92 8.96 -34.44 -0.31 -15.23 16 5 H 0.09 3.12 7.00 -52.49 -0.37 2.75 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 8 Si 0.88 21.79 24.37 -169.99 -4.14 17.65 16 9 H -0.28 -6.65 6.87 56.52 0.39 -6.26 16 10 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 C 0.53 11.94 7.15 -10.99 -0.08 11.86 16 13 O -0.53 -14.10 15.46 5.56 0.09 -14.02 16 14 N -0.75 -12.68 5.17 -60.29 -0.31 -12.99 16 15 C 0.14 1.98 5.12 -4.04 -0.02 1.96 16 16 C -0.06 -0.66 2.65 -26.68 -0.07 -0.73 16 17 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.12 -0.97 5.04 -26.89 -0.14 -1.10 16 19 C -0.13 -0.86 5.61 -27.16 -0.15 -1.02 16 20 C -0.12 -0.82 5.75 -26.90 -0.15 -0.97 16 21 C -0.09 -0.72 6.45 37.21 0.24 -0.48 16 22 S -0.24 -2.77 20.96 -107.50 -2.25 -5.02 16 23 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 25 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.40 6.00 7.43 -40.82 -0.30 5.70 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 301.65 15.07 4.55 4.55 Total: -1.00 -33.75 301.65 -7.82 -41.57 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.85 Total: 2.55 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.67 Total: -6.84 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.46 Total: -40.43 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.02 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.25 Total: -5.02 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.75 -7.82 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597492079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.919 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds