Wall clock time and date at job start Mon Mar 30 2020 04:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 O 1.21282 * 120.00038 * 119.99602 * 12 2 1 14 14 N 1.34779 * 120.00040 * 300.00473 * 12 2 1 15 15 C 1.46500 * 120.00169 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47368 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.57064 * 300.25624 * 16 15 14 18 18 C 1.53093 * 109.57658 * 180.02562 * 16 15 14 19 19 C 1.52588 * 109.95445 * 177.16910 * 18 16 15 20 20 C 1.52577 * 110.72720 * 70.67394 * 19 18 16 21 21 C 1.53101 * 109.95409 * 289.32444 * 20 19 18 22 22 S 1.81740 * 108.84156 * 63.02674 * 21 20 19 23 23 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 25 25 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 28 28 H 1.09004 * 109.46923 * 300.00119 * 15 14 12 29 29 H 1.09004 * 109.47042 * 59.99705 * 15 14 12 30 30 H 1.08998 * 109.38862 * 297.30949 * 18 16 15 31 31 H 1.08998 * 109.38923 * 57.01866 * 18 16 15 32 32 H 1.09000 * 109.22343 * 190.99661 * 19 18 16 33 33 H 1.09001 * 109.22326 * 310.35034 * 19 18 16 34 34 H 1.08998 * 109.39456 * 49.47221 * 20 19 18 35 35 H 1.08998 * 109.39147 * 169.17778 * 20 19 18 36 36 H 1.09004 * 109.57080 * 182.83621 * 21 20 19 37 37 H 1.09003 * 109.57557 * 303.08640 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1948 -0.9409 3.6507 16 6 1.6854 -0.2194 4.9000 17 1 2.0448 0.8097 4.8993 18 6 2.1946 -0.9391 6.1515 19 6 1.7500 -0.1865 7.4022 20 6 0.2458 -0.3312 7.6134 21 6 -0.5105 0.4658 6.5472 22 16 -0.1320 -0.2337 4.9130 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.9026 -0.5282 -4.4376 27 1 1.1494 0.5388 2.5436 28 1 1.8311 -1.9685 3.6505 29 1 3.2848 -0.9413 3.6508 30 1 1.7913 -1.9515 6.1760 31 1 3.2832 -0.9853 6.1248 32 1 2.2745 -0.5891 8.2688 33 1 1.9972 0.8694 7.2926 34 1 -0.0301 -1.3832 7.5423 35 1 -0.0187 0.0449 8.6017 36 1 -1.5824 0.3994 6.7336 37 1 -0.1979 1.5095 6.5812 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597492079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:15 Heat of formation + Delta-G solvation = -78.461040 kcal Electronic energy + Delta-G solvation = -17254.941776 eV Core-core repulsion = 14542.670209 eV Total energy + Delta-G solvation = -2712.271567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.69594 -38.12364 -36.00909 -35.77629 -33.52664 -32.40864 -29.15563 -27.11245 -26.13450 -24.21225 -22.90097 -21.72250 -20.90287 -18.81415 -18.16295 -17.70143 -17.08730 -16.47364 -16.16523 -15.78752 -15.61824 -14.92553 -14.82462 -14.61973 -14.39597 -14.09096 -13.70516 -13.55149 -13.38124 -13.11294 -12.76984 -12.55051 -12.29797 -12.29614 -12.11560 -11.80766 -11.46461 -11.31402 -11.21992 -10.77416 -10.62093 -10.44178 -10.01890 -8.67516 -8.26606 -6.34415 0.73342 1.34417 1.40439 1.51843 1.60474 1.85569 2.32692 2.35828 3.06981 3.54534 3.71811 3.89464 3.97623 4.10885 4.15341 4.22217 4.42310 4.42801 4.55760 4.60490 4.67923 4.71023 4.77463 4.84336 4.98521 5.01612 5.05423 5.13659 5.16755 5.37625 5.43782 5.51115 5.52866 6.26675 6.65876 6.84127 7.26761 7.47889 8.91212 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.040809 B = 0.004728 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.960015 B = 5920.917930 C = 6395.838995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 H 0.070 0.930 4 C -0.522 4.522 5 H 0.029 0.971 6 C 0.007 3.993 7 N -0.953 5.953 8 Si 0.960 3.040 9 H -0.261 1.261 10 H -0.231 1.231 11 H -0.298 1.298 12 C 0.527 3.473 13 O -0.585 6.585 14 N -0.721 5.721 15 C 0.138 3.862 16 C -0.045 4.045 17 H 0.107 0.893 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.074 4.074 22 S -0.303 6.303 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.267 0.733 27 H 0.412 0.588 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 7.993 26.572 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 H 0.088 0.912 4 C -0.560 4.560 5 H 0.048 0.952 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.785 3.215 9 H -0.187 1.187 10 H -0.154 1.154 11 H -0.226 1.226 12 C 0.316 3.684 13 O -0.464 6.464 14 N -0.375 5.375 15 C 0.013 3.987 16 C -0.174 4.174 17 H 0.125 0.875 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.159 4.159 21 C -0.222 4.222 22 S -0.077 6.077 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.249 0.751 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.292 6.938 25.541 27.204 hybrid contribution 0.436 0.687 -0.033 0.814 sum -5.856 7.625 25.507 27.259 Atomic orbital electron populations 1.21989 0.94589 1.01456 1.01389 1.19260 0.95290 0.97523 0.90934 0.91235 1.21097 1.31664 1.12851 0.90379 0.95250 1.26033 0.97414 1.00753 0.94762 1.70081 1.47661 1.42829 0.98721 0.85695 0.78737 0.79024 0.78060 1.18724 1.15393 1.22560 1.21055 0.78450 0.83623 0.85304 1.90564 1.39859 1.28602 1.87406 1.45968 1.54312 1.32687 1.04511 1.21144 0.99109 0.95940 0.82484 1.23427 0.92970 1.03727 0.97270 0.87488 1.21746 1.02151 0.99629 0.91925 1.21504 0.95970 1.01124 0.97527 1.21720 0.94771 1.00678 0.98727 1.23553 1.04668 1.02159 0.91865 1.87533 1.08331 1.85101 1.26709 0.93799 0.90013 0.93478 0.92374 0.75054 0.92693 0.90643 0.91052 0.89539 0.89513 0.91051 0.91385 0.88856 0.87093 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 8.57 71.98 0.62 -4.92 16 2 C -0.01 -0.40 2.23 -12.29 -0.03 -0.43 16 3 H 0.07 3.06 7.20 -2.39 -0.02 3.04 16 4 C -0.52 -32.06 8.96 25.60 0.23 -31.83 16 5 H 0.03 2.12 7.00 -2.91 -0.02 2.10 16 6 C 0.01 0.40 5.45 84.66 0.46 0.86 16 7 N -0.95 -62.24 13.96 21.45 0.30 -61.94 16 8 Si 0.96 44.06 24.37 68.60 1.67 45.73 16 9 H -0.26 -11.28 6.87 99.48 0.68 -10.60 16 10 H -0.23 -9.19 6.53 99.48 0.65 -8.54 16 11 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 12 C 0.53 23.99 7.15 87.66 0.63 24.62 16 13 O -0.59 -32.48 15.46 -3.04 -0.05 -32.53 16 14 N -0.72 -23.60 5.17 -463.05 -2.39 -25.99 16 15 C 0.14 3.81 5.12 86.38 0.44 4.25 16 16 C -0.05 -0.85 2.65 30.62 0.08 -0.77 16 17 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 18 C -0.12 -1.66 5.04 30.49 0.15 -1.51 16 19 C -0.12 -1.24 5.61 30.32 0.17 -1.07 16 20 C -0.12 -1.21 5.75 30.49 0.18 -1.03 16 21 C -0.07 -0.93 6.45 72.02 0.46 -0.47 16 22 S -0.30 -6.26 20.96 -56.49 -1.18 -7.45 16 23 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.08 2.54 7.57 -2.39 -0.02 2.52 16 25 H 0.05 1.92 3.27 -2.39 -0.01 1.91 16 26 H 0.27 16.14 8.31 -92.70 -0.77 15.37 16 27 H 0.41 11.26 7.43 -92.71 -0.69 10.57 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.07 0.83 8.06 -2.39 -0.02 0.81 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.62 301.65 2.02 -76.59 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.28 Total: 17.88 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 3.39 Total: -12.30 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -2.10 Total: -87.93 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.05 Total: -32.53 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.67 Total: 45.73 kcal Atomic # 16 Polarization: -6.26 SS G_CDS: -1.18 Total: -7.45 kcal Total: -78.62 2.02 -76.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597492079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.866 kcal (2) G-P(sol) polarization free energy of solvation -78.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds