Wall clock time and date at job start Mon Mar 30 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47020 * 2 1 4 4 C 1.50703 * 109.47359 * 240.00086 * 2 1 3 5 5 H 1.07996 * 120.00015 * 238.12760 * 4 2 1 6 6 C 1.37879 * 119.99666 * 58.12267 * 4 2 1 7 7 N 1.31517 * 120.00092 * 12.49914 * 6 4 2 8 8 Si 1.86798 * 119.99626 * 192.50085 * 6 4 2 9 9 H 1.48497 * 109.47261 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46843 * 239.99827 * 8 6 4 11 11 H 1.48501 * 109.47436 * 119.99874 * 8 6 4 12 12 C 1.50701 * 109.47283 * 119.99938 * 2 1 3 13 13 O 1.21277 * 119.99930 * 90.78035 * 12 2 1 14 14 N 1.34786 * 119.99773 * 270.78034 * 12 2 1 15 15 C 1.49072 * 121.03585 * 5.12295 * 14 12 2 16 16 C 1.44468 * 111.35800 * 95.97347 * 15 14 12 17 17 S 1.82674 * 111.61795 * 60.15495 * 16 15 14 18 18 C 1.79020 * 101.71348 * 284.31565 * 17 16 15 19 19 C 1.54970 * 112.92764 * 88.84441 * 18 17 16 20 20 C 1.43331 * 121.02934 * 184.84978 * 14 12 2 21 21 H 1.09005 * 108.74004 * 160.99374 * 20 14 12 22 22 C 1.52995 * 108.74505 * 42.90361 * 20 14 12 23 23 H 1.09004 * 109.46685 * 185.45570 * 1 2 3 24 24 H 1.09002 * 109.47435 * 305.45228 * 1 2 3 25 25 H 1.08999 * 109.47167 * 65.45558 * 1 2 3 26 26 H 0.96997 * 120.00180 * 5.61265 * 7 6 4 27 27 H 1.08997 * 109.09859 * 216.45343 * 15 14 12 28 28 H 1.08998 * 109.10451 * 335.55217 * 15 14 12 29 29 H 1.09000 * 109.05030 * 180.70383 * 16 15 14 30 30 H 1.08998 * 109.04870 * 299.67476 * 16 15 14 31 31 H 1.08997 * 108.78839 * 209.74010 * 18 17 16 32 32 H 1.09007 * 108.79071 * 327.95767 * 18 17 16 33 33 H 1.09003 * 108.87078 * 79.54571 * 19 18 17 34 34 H 1.09004 * 108.87312 * 198.08322 * 19 18 17 35 35 H 1.09000 * 109.47453 * 49.23834 * 22 20 14 36 36 H 1.08999 * 109.47435 * 169.23870 * 22 20 14 37 37 H 1.09000 * 109.46957 * 289.23799 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6780 -1.5705 -1.1317 6 6 1.6677 -0.2623 -2.4824 7 7 1.0932 0.9129 -2.6186 8 14 1.9894 -1.3245 -3.9849 9 1 2.6421 -2.5907 -3.5654 10 1 2.8801 -0.5965 -4.9241 11 1 0.7025 -1.6304 -4.6597 12 6 2.0324 -0.7104 1.2305 13 8 2.2480 -1.9034 1.1963 14 7 2.2420 -0.0199 2.3689 15 6 1.8786 1.4223 2.4710 16 6 0.5751 1.5952 3.0694 17 16 0.5116 0.8994 4.7572 18 6 0.4234 -0.8571 4.4231 19 6 1.8191 -1.5200 4.3044 20 6 2.8160 -0.6509 3.5207 21 1 3.2057 0.1206 4.1849 22 6 3.9778 -1.5375 3.0679 23 1 -0.3633 -1.0231 0.0977 24 1 -0.3634 0.5961 0.8371 25 1 -0.3633 0.4269 -0.9348 26 1 0.9997 1.4989 -1.8513 27 1 2.6220 1.9350 3.0812 28 1 1.8729 1.8603 1.4730 29 1 0.3425 2.6592 3.1142 30 1 -0.1696 1.0943 2.4509 31 1 -0.1277 -1.3406 5.2297 32 1 -0.1185 -1.0102 3.4898 33 1 2.2128 -1.6946 5.3058 34 1 1.7123 -2.4782 3.7960 35 1 4.6327 -0.9690 2.4076 36 1 4.5412 -1.8712 3.9392 37 1 3.5870 -2.4039 2.5342 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597557684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:48 Heat of formation + Delta-G solvation = -36.382099 kcal Electronic energy + Delta-G solvation = -18631.339552 eV Core-core repulsion = 15920.892664 eV Total energy + Delta-G solvation = -2710.446887 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.91128 -36.23993 -34.77381 -33.49972 -31.08260 -30.26499 -28.84630 -25.12928 -24.24818 -23.08953 -22.98346 -20.96689 -18.10218 -17.10029 -16.53303 -15.91763 -15.76286 -15.40220 -14.43225 -14.05454 -13.78000 -13.65615 -13.44496 -13.13270 -12.80204 -12.51448 -12.10433 -11.80126 -11.52310 -11.41724 -11.17135 -11.02290 -10.95735 -10.92404 -10.65173 -10.60398 -10.36923 -10.11269 -9.67842 -8.76188 -8.40364 -8.32682 -8.26972 -7.66304 -6.42091 -4.11761 1.79717 2.52902 3.42889 3.45066 3.47257 3.54543 3.65117 4.51434 4.78809 4.88179 4.99949 5.05712 5.19639 5.26005 5.39761 5.44598 5.65595 5.71264 5.77574 5.82494 5.90460 5.95700 6.00502 6.15095 6.30186 6.35673 6.52062 6.59102 6.64682 7.00729 7.20596 7.34745 7.85084 8.14219 8.47526 8.80449 9.10074 9.54430 10.93494 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.007014 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.784319 B = 3991.026615 C = 4479.754084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 H 0.035 0.965 4 C -0.582 4.582 5 H 0.062 0.938 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 1.068 2.932 9 H -0.287 1.287 10 H -0.288 1.288 11 H -0.285 1.285 12 C 0.533 3.467 13 O -0.531 6.531 14 N -0.620 5.620 15 C 0.107 3.893 16 C -0.101 4.101 17 S -0.257 6.257 18 C -0.087 4.087 19 C -0.123 4.123 20 C 0.147 3.853 21 H 0.080 0.920 22 C -0.170 4.170 23 H 0.042 0.958 24 H 0.021 0.979 25 H 0.075 0.925 26 H 0.269 0.731 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 1.536 13.281 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.003 4.003 3 H 0.053 0.947 4 C -0.620 4.620 5 H 0.081 0.919 6 C -0.179 4.179 7 N -0.545 5.545 8 Si 0.896 3.104 9 H -0.213 1.213 10 H -0.215 1.215 11 H -0.212 1.212 12 C 0.325 3.675 13 O -0.406 6.406 14 N -0.356 5.356 15 C -0.017 4.017 16 C -0.250 4.250 17 S -0.030 6.030 18 C -0.235 4.235 19 C -0.164 4.164 20 C 0.041 3.959 21 H 0.098 0.902 22 C -0.227 4.227 23 H 0.061 0.939 24 H 0.040 0.960 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.094 1.304 12.593 12.661 hybrid contribution 0.135 -0.463 0.644 0.804 sum 0.041 0.841 13.237 13.264 Atomic orbital electron populations 1.21872 0.96934 1.00114 1.00820 1.18994 0.93571 0.96481 0.91264 0.94707 1.21853 1.33802 1.16040 0.90340 0.91926 1.25764 0.93874 0.97442 1.00830 1.70774 1.41490 1.07810 1.34452 0.83575 0.76633 0.75218 0.74959 1.21319 1.21502 1.21161 1.21522 0.75116 0.87388 0.83505 1.90470 1.50487 1.15661 1.84010 1.48192 1.64755 1.10145 1.12525 1.20516 0.95366 0.82795 1.03029 1.22757 1.02258 1.04947 0.94989 1.86337 1.97478 1.05316 1.13839 1.23326 1.00859 0.94229 1.05114 1.22573 0.93497 0.99859 1.00441 1.20414 0.92756 0.95275 0.87417 0.90192 1.22360 0.97160 1.02276 1.00946 0.93925 0.96019 0.90611 0.91999 0.90257 0.88133 0.86872 0.88740 0.88728 0.90072 0.91213 0.90643 0.92803 0.93194 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.84 37.16 0.33 -2.77 16 2 C 0.02 0.43 1.63 -92.92 -0.15 0.28 16 3 H 0.04 0.83 5.57 -51.93 -0.29 0.54 16 4 C -0.58 -16.27 8.31 -34.44 -0.29 -16.56 16 5 H 0.06 1.87 7.18 -52.49 -0.38 1.50 16 6 C 0.02 0.68 5.08 -17.82 -0.09 0.59 16 7 N -0.91 -25.82 12.56 55.43 0.70 -25.12 16 8 Si 1.07 25.26 29.92 -169.99 -5.09 20.17 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.53 11.69 6.31 -10.98 -0.07 11.62 16 13 O -0.53 -13.13 13.22 5.56 0.07 -13.06 16 14 N -0.62 -10.68 2.15 -170.49 -0.37 -11.05 16 15 C 0.11 1.52 5.32 -6.59 -0.04 1.49 16 16 C -0.10 -1.30 5.87 33.18 0.19 -1.11 16 17 S -0.26 -3.35 21.28 -107.50 -2.29 -5.63 16 18 C -0.09 -1.17 5.83 38.20 0.22 -0.95 16 19 C -0.12 -1.71 5.53 -25.31 -0.14 -1.85 16 20 C 0.15 2.24 2.11 -69.23 -0.15 2.10 16 21 H 0.08 1.10 7.45 -51.93 -0.39 0.72 16 22 C -0.17 -2.74 8.28 37.15 0.31 -2.43 16 23 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.02 0.40 5.48 -51.93 -0.28 0.11 16 25 H 0.08 1.83 5.96 -51.93 -0.31 1.53 16 26 H 0.27 7.43 6.40 -40.82 -0.26 7.17 16 27 H 0.08 0.98 7.80 -51.93 -0.41 0.57 16 28 H 0.10 1.52 5.71 -51.93 -0.30 1.22 16 29 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.36 5.39 -51.93 -0.28 1.08 16 31 H 0.09 1.12 8.14 -51.47 -0.42 0.70 16 32 H 0.08 1.25 7.91 -51.46 -0.41 0.84 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.18 7.79 -51.93 -0.40 0.78 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.72 5.66 -51.93 -0.29 1.42 16 LS Contribution 290.70 15.07 4.38 4.38 Total: -1.00 -30.22 290.70 -7.78 -38.00 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.32 Total: 1.91 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 0.14 Total: -9.60 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.33 Total: -36.18 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.07 Total: -13.06 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.09 Total: 20.17 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -2.29 Total: -5.63 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.22 -7.78 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597557684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.618 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds