Wall clock time and date at job start Mon Mar 30 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47020 * 2 1 4 4 C 1.50703 * 109.47359 * 240.00086 * 2 1 3 5 5 H 1.07996 * 120.00015 * 238.12760 * 4 2 1 6 6 C 1.37879 * 119.99666 * 58.12267 * 4 2 1 7 7 N 1.31517 * 120.00092 * 12.49914 * 6 4 2 8 8 Si 1.86798 * 119.99626 * 192.50085 * 6 4 2 9 9 H 1.48497 * 109.47261 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46843 * 239.99827 * 8 6 4 11 11 H 1.48501 * 109.47436 * 119.99874 * 8 6 4 12 12 C 1.50701 * 109.47283 * 119.99938 * 2 1 3 13 13 O 1.21277 * 119.99930 * 90.78035 * 12 2 1 14 14 N 1.34786 * 119.99773 * 270.78034 * 12 2 1 15 15 C 1.49072 * 121.03585 * 5.12295 * 14 12 2 16 16 C 1.44468 * 111.35800 * 95.97347 * 15 14 12 17 17 S 1.82674 * 111.61795 * 60.15495 * 16 15 14 18 18 C 1.79020 * 101.71348 * 284.31565 * 17 16 15 19 19 C 1.54970 * 112.92764 * 88.84441 * 18 17 16 20 20 C 1.43331 * 121.02934 * 184.84978 * 14 12 2 21 21 H 1.09005 * 108.74004 * 160.99374 * 20 14 12 22 22 C 1.52995 * 108.74505 * 42.90361 * 20 14 12 23 23 H 1.09004 * 109.46685 * 185.45570 * 1 2 3 24 24 H 1.09002 * 109.47435 * 305.45228 * 1 2 3 25 25 H 1.08999 * 109.47167 * 65.45558 * 1 2 3 26 26 H 0.96997 * 120.00180 * 5.61265 * 7 6 4 27 27 H 1.08997 * 109.09859 * 216.45343 * 15 14 12 28 28 H 1.08998 * 109.10451 * 335.55217 * 15 14 12 29 29 H 1.09000 * 109.05030 * 180.70383 * 16 15 14 30 30 H 1.08998 * 109.04870 * 299.67476 * 16 15 14 31 31 H 1.08997 * 108.78839 * 209.74010 * 18 17 16 32 32 H 1.09007 * 108.79071 * 327.95767 * 18 17 16 33 33 H 1.09003 * 108.87078 * 79.54571 * 19 18 17 34 34 H 1.09004 * 108.87312 * 198.08322 * 19 18 17 35 35 H 1.09000 * 109.47453 * 49.23834 * 22 20 14 36 36 H 1.08999 * 109.47435 * 169.23870 * 22 20 14 37 37 H 1.09000 * 109.46957 * 289.23799 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6780 -1.5705 -1.1317 6 6 1.6677 -0.2623 -2.4824 7 7 1.0932 0.9129 -2.6186 8 14 1.9894 -1.3245 -3.9849 9 1 2.6421 -2.5907 -3.5654 10 1 2.8801 -0.5965 -4.9241 11 1 0.7025 -1.6304 -4.6597 12 6 2.0324 -0.7104 1.2305 13 8 2.2480 -1.9034 1.1963 14 7 2.2420 -0.0199 2.3689 15 6 1.8786 1.4223 2.4710 16 6 0.5751 1.5952 3.0694 17 16 0.5116 0.8994 4.7572 18 6 0.4234 -0.8571 4.4231 19 6 1.8191 -1.5200 4.3044 20 6 2.8160 -0.6509 3.5207 21 1 3.2057 0.1206 4.1849 22 6 3.9778 -1.5375 3.0679 23 1 -0.3633 -1.0231 0.0977 24 1 -0.3634 0.5961 0.8371 25 1 -0.3633 0.4269 -0.9348 26 1 0.9997 1.4989 -1.8513 27 1 2.6220 1.9350 3.0812 28 1 1.8729 1.8603 1.4730 29 1 0.3425 2.6592 3.1142 30 1 -0.1696 1.0943 2.4509 31 1 -0.1277 -1.3406 5.2297 32 1 -0.1185 -1.0102 3.4898 33 1 2.2128 -1.6946 5.3058 34 1 1.7123 -2.4782 3.7960 35 1 4.6327 -0.9690 2.4076 36 1 4.5412 -1.8712 3.9392 37 1 3.5870 -2.4039 2.5342 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597557684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:48 Heat of formation + Delta-G solvation = -53.735475 kcal Electronic energy + Delta-G solvation = -18632.092051 eV Core-core repulsion = 15920.892664 eV Total energy + Delta-G solvation = -2711.199386 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.44211 -37.78221 -36.52089 -34.97109 -32.30151 -32.14310 -30.20515 -27.16681 -25.61604 -24.60694 -24.20256 -22.53360 -19.79769 -18.76839 -18.09052 -17.33587 -17.00861 -16.63781 -15.83646 -15.58895 -15.45456 -15.20778 -14.83624 -14.68546 -14.21214 -13.91959 -13.56497 -13.49477 -13.00867 -12.85047 -12.71435 -12.66044 -12.48978 -12.41019 -12.13702 -12.01838 -11.99339 -11.94144 -10.91767 -10.67286 -10.39882 -10.12838 -9.71221 -8.69524 -8.62887 -6.32421 0.75959 1.46207 1.51123 1.57149 1.77229 1.83145 2.09258 2.54648 3.11501 3.56075 3.75120 3.84829 3.92675 4.07490 4.20487 4.22974 4.34867 4.45624 4.47056 4.54512 4.69922 4.71500 4.74549 4.75950 4.86332 4.89410 4.94061 5.06270 5.16029 5.31492 5.47409 5.81142 5.96218 6.21809 6.41865 6.68889 7.33695 7.48147 8.74781 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.007014 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.784319 B = 3991.026615 C = 4479.754084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.014 3.986 3 H 0.039 0.961 4 C -0.604 4.604 5 H 0.032 0.968 6 C -0.013 4.013 7 N -0.921 5.921 8 Si 1.105 2.895 9 H -0.289 1.289 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.532 3.468 13 O -0.570 6.570 14 N -0.612 5.612 15 C 0.103 3.897 16 C -0.102 4.102 17 S -0.235 6.235 18 C -0.089 4.089 19 C -0.117 4.117 20 C 0.141 3.859 21 H 0.108 0.892 22 C -0.164 4.164 23 H 0.025 0.975 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.266 0.734 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.144 0.856 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 2.726 15.067 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.008 4.008 3 H 0.056 0.944 4 C -0.642 4.642 5 H 0.050 0.950 6 C -0.213 4.213 7 N -0.558 5.558 8 Si 0.929 3.071 9 H -0.214 1.214 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.323 3.677 13 O -0.448 6.448 14 N -0.346 5.346 15 C -0.020 4.020 16 C -0.250 4.250 17 S -0.008 6.008 18 C -0.238 4.238 19 C -0.158 4.158 20 C 0.036 3.964 21 H 0.126 0.874 22 C -0.222 4.222 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.162 0.838 30 H 0.096 0.904 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.138 2.540 14.419 14.642 hybrid contribution 0.176 -0.793 0.180 0.832 sum 0.037 1.748 14.600 14.704 Atomic orbital electron populations 1.21682 0.95830 0.99529 1.01248 1.18934 0.94427 0.96234 0.91164 0.94377 1.22034 1.34001 1.15550 0.92594 0.94982 1.26856 0.93320 0.97891 1.03207 1.70848 1.42308 1.08180 1.34420 0.83072 0.77239 0.74030 0.72780 1.21449 1.20025 1.19968 1.21114 0.75276 0.86873 0.84416 1.90466 1.52340 1.17133 1.84885 1.48115 1.63377 1.11359 1.11727 1.20763 0.97138 0.80746 1.03333 1.22730 1.00670 1.06733 0.94893 1.86281 1.97374 1.04074 1.13023 1.23324 1.00392 0.95408 1.04675 1.22516 0.93644 0.98364 1.01310 1.20677 0.92784 0.96048 0.86876 0.87410 1.22266 0.97486 1.00890 1.01567 0.95604 0.92288 0.92689 0.92349 0.87346 0.89155 0.83799 0.90412 0.86821 0.92500 0.88326 0.93058 0.94479 0.89944 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.84 71.98 0.64 -4.98 16 2 C 0.01 0.66 1.63 -12.29 -0.02 0.64 16 3 H 0.04 1.83 5.57 -2.39 -0.01 1.82 16 4 C -0.60 -34.81 8.31 25.60 0.21 -34.60 16 5 H 0.03 2.00 7.18 -2.91 -0.02 1.98 16 6 C -0.01 -0.71 5.08 84.65 0.43 -0.28 16 7 N -0.92 -52.62 12.56 21.45 0.27 -52.35 16 8 Si 1.11 51.37 29.92 68.60 2.05 53.43 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C 0.53 23.76 6.31 87.66 0.55 24.32 16 13 O -0.57 -29.33 13.22 -3.02 -0.04 -29.37 16 14 N -0.61 -20.46 2.15 -811.70 -1.75 -22.21 16 15 C 0.10 2.68 5.32 83.31 0.44 3.12 16 16 C -0.10 -2.33 5.87 69.41 0.41 -1.92 16 17 S -0.23 -5.31 21.28 -56.49 -1.20 -6.51 16 18 C -0.09 -2.23 5.83 72.66 0.42 -1.80 16 19 C -0.12 -3.06 5.53 31.52 0.17 -2.88 16 20 C 0.14 4.03 2.11 45.82 0.10 4.13 16 21 H 0.11 2.55 7.45 -2.38 -0.02 2.53 16 22 C -0.16 -5.20 8.28 71.98 0.60 -4.60 16 23 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 2.16 5.48 -2.39 -0.01 2.14 16 25 H 0.05 2.69 5.96 -2.39 -0.01 2.68 16 26 H 0.27 14.83 6.40 -92.71 -0.59 14.24 16 27 H 0.11 2.25 7.80 -2.39 -0.02 2.23 16 28 H 0.09 2.58 5.71 -2.39 -0.01 2.57 16 29 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 2.07 5.39 -2.39 -0.01 2.05 16 31 H 0.11 2.38 8.14 -2.68 -0.02 2.36 16 32 H 0.06 1.70 7.91 -2.68 -0.02 1.68 16 33 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.60 7.79 -2.38 -0.02 1.58 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.19 5.66 -2.39 -0.01 2.18 16 Total: -1.00 -67.03 290.70 4.52 -62.52 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.23 Total: 13.37 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 3.95 Total: -18.87 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -1.48 Total: -74.56 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.04 Total: -29.37 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.43 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.20 Total: -6.51 kcal Total: -67.03 4.52 -62.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597557684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.784 kcal (2) G-P(sol) polarization free energy of solvation -67.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds