Wall clock time and date at job start Mon Mar 30 2020 04:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46972 * 2 1 4 4 C 1.50702 * 109.47440 * 120.00237 * 2 1 3 5 5 H 1.07999 * 120.00203 * 120.00059 * 4 2 1 6 6 C 1.37877 * 119.99901 * 300.00237 * 4 2 1 7 7 N 1.31518 * 120.00009 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47307 * 59.99452 * 8 6 4 10 10 H 1.48498 * 109.47028 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46715 * 299.99796 * 8 6 4 12 12 C 1.50704 * 109.47142 * 240.00182 * 2 1 3 13 13 O 1.21277 * 119.99893 * 264.22648 * 12 2 1 14 14 N 1.34781 * 119.99948 * 84.23052 * 12 2 1 15 15 C 1.42782 * 121.56326 * 5.12636 * 14 12 2 16 16 C 1.56194 * 113.95724 * 284.29321 * 15 14 12 17 17 S 1.83135 * 107.95647 * 321.00994 * 16 15 14 18 18 C 1.78695 * 105.76651 * 321.71045 * 17 16 15 19 19 C 1.53476 * 107.06897 * 92.55195 * 18 17 16 20 20 C 1.44329 * 112.96109 * 277.78112 * 19 18 17 21 21 H 1.08997 * 109.09393 * 298.88066 * 20 19 18 22 22 C 1.53006 * 109.09523 * 179.87054 * 20 19 18 23 23 H 1.08993 * 109.46941 * 69.95042 * 1 2 3 24 24 H 1.08997 * 109.46673 * 309.94165 * 1 2 3 25 25 H 1.09001 * 109.46861 * 189.94636 * 1 2 3 26 26 H 0.97000 * 120.00246 * 180.02562 * 7 6 4 27 27 H 1.09002 * 108.64363 * 45.16796 * 15 14 12 28 28 H 1.09000 * 108.63913 * 162.99761 * 15 14 12 29 29 H 1.09003 * 109.80413 * 201.39133 * 16 15 14 30 30 H 1.09003 * 109.82097 * 80.63818 * 16 15 14 31 31 H 1.09008 * 109.92805 * 333.16273 * 18 17 16 32 32 H 1.08998 * 109.93209 * 211.95312 * 18 17 16 33 33 H 1.09007 * 108.78428 * 156.88419 * 19 18 17 34 34 H 1.09004 * 108.69523 * 38.61932 * 19 18 17 35 35 H 1.09003 * 109.46889 * 308.86666 * 22 20 19 36 36 H 1.08996 * 109.47146 * 68.86791 * 22 20 19 37 37 H 1.08997 * 109.47006 * 188.86505 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5199 4.0080 12 6 2.0324 -0.7104 -1.2305 13 8 2.3341 -1.8836 -1.1727 14 7 2.1464 -0.0418 -2.3953 15 6 1.9043 1.3629 -2.4775 16 6 0.3913 1.7490 -2.4407 17 16 -0.5321 0.5078 -3.4207 18 6 0.5072 0.1255 -4.8231 19 6 1.3600 -1.0897 -4.4338 20 6 2.5247 -0.7351 -3.6588 21 1 3.1598 -0.0762 -4.2507 22 6 3.3051 -2.0063 -3.3179 23 1 -0.3633 0.3523 -0.9653 24 1 -0.3632 0.6598 0.7879 25 1 -0.3633 -1.0122 0.1775 26 1 0.7095 1.1617 3.4844 27 1 2.4035 1.8521 -1.6410 28 1 2.3374 1.7373 -3.4050 29 1 0.2521 2.7390 -2.8751 30 1 0.0339 1.7453 -1.4109 31 1 1.1519 0.9746 -5.0502 32 1 -0.1102 -0.1154 -5.6885 33 1 1.6842 -1.5967 -5.3428 34 1 0.7454 -1.7754 -3.8504 35 1 2.6294 -2.7410 -2.8799 36 1 3.7475 -2.4156 -4.2261 37 1 4.0943 -1.7679 -2.6049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597557685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:50 Heat of formation + Delta-G solvation = -20.365421 kcal Electronic energy + Delta-G solvation = -18695.310346 eV Core-core repulsion = 15985.557993 eV Total energy + Delta-G solvation = -2709.752352 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.87243 -36.41546 -34.56351 -33.21583 -30.76029 -30.02403 -28.80886 -25.22081 -24.22373 -23.35284 -22.64448 -20.83766 -17.93019 -16.60278 -16.45030 -16.12088 -15.18518 -14.96931 -14.72777 -14.25619 -14.04144 -13.37214 -13.22589 -12.92764 -12.64038 -12.25480 -11.87334 -11.79677 -11.55367 -11.21713 -11.11402 -10.99227 -10.89509 -10.66660 -10.62508 -10.26471 -10.09912 -9.94546 -9.51207 -8.88121 -8.42031 -8.13473 -8.05475 -7.27246 -6.00903 -4.03052 1.88872 2.87360 3.36798 3.39583 3.44104 3.54772 3.77203 4.48444 4.67619 4.90999 5.02585 5.09789 5.29305 5.32214 5.33840 5.53645 5.64866 5.76318 5.85343 5.88151 6.01109 6.06749 6.15547 6.28088 6.50775 6.73219 6.81982 6.98933 7.07479 7.17087 7.53515 7.82531 8.00410 8.14326 8.44495 9.01845 9.27970 9.61350 11.07036 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.029030 B = 0.007604 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.277590 B = 3681.356736 C = 4275.430323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.034 3.966 3 H 0.042 0.958 4 C -0.501 4.501 5 H 0.068 0.932 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.535 3.465 13 O -0.536 6.536 14 N -0.614 5.614 15 C 0.113 3.887 16 C -0.115 4.115 17 S -0.253 6.253 18 C -0.093 4.093 19 C -0.132 4.132 20 C 0.143 3.857 21 H 0.064 0.936 22 C -0.144 4.144 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 3.011 -14.210 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.060 0.940 4 C -0.539 4.539 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.328 3.672 13 O -0.411 6.411 14 N -0.349 5.349 15 C -0.015 4.015 16 C -0.264 4.264 17 S -0.026 6.026 18 C -0.241 4.241 19 C -0.172 4.172 20 C 0.041 3.959 21 H 0.082 0.918 22 C -0.201 4.201 23 H 0.055 0.945 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.149 0.851 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.514 2.046 -13.791 13.951 hybrid contribution 1.407 0.317 0.462 1.514 sum 0.893 2.362 -13.329 13.566 Atomic orbital electron populations 1.22024 0.95930 1.01703 1.00029 1.18876 0.94408 0.96296 0.89127 0.93973 1.21051 1.31211 1.12476 0.89202 0.91393 1.24913 0.95103 0.95045 0.98968 1.69884 1.37030 1.23000 1.23554 0.86548 0.79136 0.79867 0.81827 1.20322 1.21376 1.20185 1.21869 0.74409 0.87329 0.83612 1.90501 1.48828 1.17153 1.84641 1.47959 1.70882 1.07761 1.08344 1.21228 0.93847 0.83636 1.02827 1.25458 0.97990 0.98409 1.04544 1.86347 1.31398 1.57929 1.26949 1.23166 1.01155 1.01054 0.98733 1.20819 0.98156 0.97800 1.00444 1.19780 0.95055 0.95564 0.85510 0.91766 1.22210 1.01071 0.97092 0.99753 0.94498 0.89912 0.94601 0.92978 0.89757 0.91399 0.89542 0.85107 0.90102 0.88139 0.90881 0.89840 0.89422 0.94245 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 7.82 37.16 0.29 -3.00 16 2 C 0.03 0.84 1.82 -92.92 -0.17 0.67 16 3 H 0.04 1.05 6.45 -51.93 -0.34 0.71 16 4 C -0.50 -14.17 8.31 -34.44 -0.29 -14.45 16 5 H 0.07 2.02 7.01 -52.49 -0.37 1.66 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.90 -25.04 11.45 55.43 0.63 -24.41 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.54 12.06 6.57 -10.98 -0.07 11.99 16 13 O -0.54 -13.46 12.07 5.56 0.07 -13.39 16 14 N -0.61 -10.77 2.06 -169.53 -0.35 -11.12 16 15 C 0.11 1.65 4.65 -4.29 -0.02 1.63 16 16 C -0.11 -1.65 6.12 38.87 0.24 -1.42 16 17 S -0.25 -3.82 19.64 -107.50 -2.11 -5.93 16 18 C -0.09 -1.10 5.97 37.40 0.22 -0.88 16 19 C -0.13 -1.73 4.50 -30.52 -0.14 -1.87 16 20 C 0.14 2.10 2.60 -70.57 -0.18 1.92 16 21 H 0.06 0.80 7.73 -51.93 -0.40 0.40 16 22 C -0.14 -2.31 7.66 37.16 0.28 -2.03 16 23 H 0.04 0.75 3.32 -51.93 -0.17 0.58 16 24 H 0.08 2.10 6.41 -51.93 -0.33 1.76 16 25 H 0.03 0.90 8.11 -51.93 -0.42 0.48 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.08 1.30 6.79 -51.93 -0.35 0.95 16 28 H 0.07 0.80 6.83 -51.93 -0.35 0.44 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.13 2.20 5.04 -51.93 -0.26 1.93 16 31 H 0.08 0.85 7.16 -51.78 -0.37 0.48 16 32 H 0.10 1.03 8.14 -51.79 -0.42 0.61 16 33 H 0.07 0.78 8.13 -51.92 -0.42 0.36 16 34 H 0.08 1.34 7.71 -51.93 -0.40 0.94 16 35 H 0.09 1.65 6.23 -51.93 -0.32 1.33 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 1.09 7.58 -51.93 -0.39 0.70 16 LS Contribution 284.61 15.07 4.29 4.29 Total: -1.00 -30.29 284.61 -7.73 -38.01 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.31 Total: 1.50 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 0.07 Total: -5.83 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.28 Total: -35.53 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.07 Total: -13.39 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -2.11 Total: -5.93 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.29 -7.73 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597557685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.648 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds