Wall clock time and date at job start Mon Mar 30 2020 04:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46972 * 2 1 4 4 C 1.50702 * 109.47440 * 120.00237 * 2 1 3 5 5 H 1.07999 * 120.00203 * 120.00059 * 4 2 1 6 6 C 1.37877 * 119.99901 * 300.00237 * 4 2 1 7 7 N 1.31518 * 120.00009 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47307 * 59.99452 * 8 6 4 10 10 H 1.48498 * 109.47028 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46715 * 299.99796 * 8 6 4 12 12 C 1.50704 * 109.47142 * 240.00182 * 2 1 3 13 13 O 1.21277 * 119.99893 * 264.22648 * 12 2 1 14 14 N 1.34781 * 119.99948 * 84.23052 * 12 2 1 15 15 C 1.42782 * 121.56326 * 5.12636 * 14 12 2 16 16 C 1.56194 * 113.95724 * 284.29321 * 15 14 12 17 17 S 1.83135 * 107.95647 * 321.00994 * 16 15 14 18 18 C 1.78695 * 105.76651 * 321.71045 * 17 16 15 19 19 C 1.53476 * 107.06897 * 92.55195 * 18 17 16 20 20 C 1.44329 * 112.96109 * 277.78112 * 19 18 17 21 21 H 1.08997 * 109.09393 * 298.88066 * 20 19 18 22 22 C 1.53006 * 109.09523 * 179.87054 * 20 19 18 23 23 H 1.08993 * 109.46941 * 69.95042 * 1 2 3 24 24 H 1.08997 * 109.46673 * 309.94165 * 1 2 3 25 25 H 1.09001 * 109.46861 * 189.94636 * 1 2 3 26 26 H 0.97000 * 120.00246 * 180.02562 * 7 6 4 27 27 H 1.09002 * 108.64363 * 45.16796 * 15 14 12 28 28 H 1.09000 * 108.63913 * 162.99761 * 15 14 12 29 29 H 1.09003 * 109.80413 * 201.39133 * 16 15 14 30 30 H 1.09003 * 109.82097 * 80.63818 * 16 15 14 31 31 H 1.09008 * 109.92805 * 333.16273 * 18 17 16 32 32 H 1.08998 * 109.93209 * 211.95312 * 18 17 16 33 33 H 1.09007 * 108.78428 * 156.88419 * 19 18 17 34 34 H 1.09004 * 108.69523 * 38.61932 * 19 18 17 35 35 H 1.09003 * 109.46889 * 308.86666 * 22 20 19 36 36 H 1.08996 * 109.47146 * 68.86791 * 22 20 19 37 37 H 1.08997 * 109.47006 * 188.86505 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5199 4.0080 12 6 2.0324 -0.7104 -1.2305 13 8 2.3341 -1.8836 -1.1727 14 7 2.1464 -0.0418 -2.3953 15 6 1.9043 1.3629 -2.4775 16 6 0.3913 1.7490 -2.4407 17 16 -0.5321 0.5078 -3.4207 18 6 0.5072 0.1255 -4.8231 19 6 1.3600 -1.0897 -4.4338 20 6 2.5247 -0.7351 -3.6588 21 1 3.1598 -0.0762 -4.2507 22 6 3.3051 -2.0063 -3.3179 23 1 -0.3633 0.3523 -0.9653 24 1 -0.3632 0.6598 0.7879 25 1 -0.3633 -1.0122 0.1775 26 1 0.7095 1.1617 3.4844 27 1 2.4035 1.8521 -1.6410 28 1 2.3374 1.7373 -3.4050 29 1 0.2521 2.7390 -2.8751 30 1 0.0339 1.7453 -1.4109 31 1 1.1519 0.9746 -5.0502 32 1 -0.1102 -0.1154 -5.6885 33 1 1.6842 -1.5967 -5.3428 34 1 0.7454 -1.7754 -3.8504 35 1 2.6294 -2.7410 -2.8799 36 1 3.7475 -2.4156 -4.2261 37 1 4.0943 -1.7679 -2.6049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597557685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:49 Heat of formation + Delta-G solvation = -38.501370 kcal Electronic energy + Delta-G solvation = -18696.096779 eV Core-core repulsion = 15985.557993 eV Total energy + Delta-G solvation = -2710.538786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37622 -37.92466 -36.21629 -34.92330 -32.29555 -31.64446 -30.08506 -27.30438 -25.51089 -24.72635 -24.17072 -22.24929 -19.52086 -18.36168 -17.91473 -17.67265 -16.65231 -16.54482 -16.26470 -15.68085 -15.31011 -14.82836 -14.59136 -14.47569 -14.02767 -13.96422 -13.42679 -13.10824 -12.96567 -12.90952 -12.67335 -12.58661 -12.43493 -12.23428 -12.15106 -11.95820 -11.94867 -11.68609 -10.92185 -10.59471 -10.53379 -9.82238 -9.54353 -8.45753 -8.14669 -6.24419 0.80402 1.38579 1.40684 1.48736 1.81399 1.97461 2.20959 2.46271 3.14612 3.59964 3.80784 3.87987 4.10066 4.22283 4.25909 4.46841 4.49515 4.54399 4.66697 4.76540 4.78909 4.80376 4.88036 4.88585 5.05286 5.05887 5.19869 5.36161 5.42218 5.52221 5.74813 5.83768 5.92514 6.20382 6.69245 6.83356 7.40780 7.59704 8.90908 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.029030 B = 0.007604 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.277590 B = 3681.356736 C = 4275.430323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.032 3.968 3 H 0.039 0.961 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.281 1.281 12 C 0.533 3.467 13 O -0.573 6.573 14 N -0.607 5.607 15 C 0.103 3.897 16 C -0.104 4.104 17 S -0.314 6.314 18 C -0.072 4.072 19 C -0.129 4.129 20 C 0.140 3.860 21 H 0.107 0.893 22 C -0.138 4.138 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.005 0.995 26 H 0.264 0.736 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 4.223 -16.667 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.325 3.675 13 O -0.452 6.452 14 N -0.341 5.341 15 C -0.024 4.024 16 C -0.252 4.252 17 S -0.088 6.088 18 C -0.220 4.220 19 C -0.169 4.169 20 C 0.039 3.961 21 H 0.125 0.875 22 C -0.196 4.196 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.024 0.976 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.159 3.300 -16.282 16.614 hybrid contribution 1.209 -0.055 1.145 1.666 sum 1.368 3.246 -15.137 15.541 Atomic orbital electron populations 1.21841 0.95612 0.99306 1.01175 1.18756 0.94643 0.95817 0.89669 0.94342 1.21232 1.31799 1.12351 0.91410 0.93926 1.25562 0.95209 0.95740 1.01288 1.69961 1.37101 1.23484 1.24268 0.85708 0.78815 0.78610 0.79088 1.19825 1.19849 1.20649 1.21364 0.74647 0.86780 0.84758 1.90500 1.50639 1.18512 1.85582 1.47827 1.69250 1.08961 1.08013 1.21511 0.94347 0.81751 1.04783 1.25325 0.97145 0.99853 1.02921 1.86644 1.33708 1.58745 1.29680 1.23232 1.00694 1.01109 0.96977 1.20745 0.97008 0.98072 1.01051 1.20111 0.96321 0.95402 0.84262 0.87533 1.22074 0.99748 0.97296 1.00469 0.91270 0.91856 0.97550 0.92659 0.90840 0.86784 0.86030 0.88215 0.87366 0.85876 0.87232 0.93528 0.93014 0.90446 0.94947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 7.82 71.98 0.56 -5.43 16 2 C 0.03 1.65 1.82 -12.28 -0.02 1.63 16 3 H 0.04 1.98 6.45 -2.39 -0.02 1.96 16 4 C -0.53 -31.22 8.31 25.60 0.21 -31.01 16 5 H 0.04 2.67 7.01 -2.91 -0.02 2.65 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -51.75 11.45 21.45 0.25 -51.50 16 8 Si 0.95 45.67 29.54 68.60 2.03 47.70 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 12 C 0.53 24.66 6.57 87.66 0.58 25.23 16 13 O -0.57 -30.18 12.07 -3.02 -0.04 -30.22 16 14 N -0.61 -20.51 2.06 -808.66 -1.67 -22.18 16 15 C 0.10 2.75 4.65 88.17 0.41 3.16 16 16 C -0.10 -2.76 6.12 73.09 0.45 -2.32 16 17 S -0.31 -8.89 19.64 -56.49 -1.11 -10.00 16 18 C -0.07 -1.39 5.97 72.14 0.43 -0.96 16 19 C -0.13 -2.93 4.50 28.14 0.13 -2.80 16 20 C 0.14 3.67 2.60 41.90 0.11 3.78 16 21 H 0.11 2.01 7.73 -2.39 -0.02 1.99 16 22 C -0.14 -4.29 7.66 71.98 0.55 -3.74 16 23 H 0.07 2.92 3.32 -2.39 -0.01 2.92 16 24 H 0.06 3.33 6.41 -2.39 -0.02 3.32 16 25 H 0.01 0.29 8.11 -2.39 -0.02 0.27 16 26 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.07 2.16 6.79 -2.39 -0.02 2.15 16 28 H 0.11 2.05 6.83 -2.39 -0.02 2.03 16 29 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.10 3.31 5.04 -2.39 -0.01 3.30 16 31 H 0.11 1.56 7.16 -2.47 -0.02 1.54 16 32 H 0.12 1.90 8.14 -2.48 -0.02 1.88 16 33 H 0.11 1.78 8.13 -2.38 -0.02 1.76 16 34 H 0.05 1.44 7.71 -2.38 -0.02 1.42 16 35 H 0.05 1.98 6.23 -2.39 -0.01 1.97 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.03 1.16 7.58 -2.39 -0.02 1.14 16 Total: -1.00 -70.12 284.61 4.37 -65.75 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.06 Total: 11.22 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.85 Total: -10.78 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -1.42 Total: -73.68 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.04 Total: -30.22 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.11 Total: -10.00 kcal Total: -70.12 4.37 -65.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597557685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.252 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds