Wall clock time and date at job start Mon Mar 30 2020 04:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47149 * 2 1 4 4 C 1.50698 * 109.47033 * 239.99697 * 2 1 3 5 5 H 1.07998 * 120.00274 * 245.35665 * 4 2 1 6 6 C 1.37879 * 120.00067 * 65.35854 * 4 2 1 7 7 N 1.31513 * 120.00370 * 197.50931 * 6 4 2 8 8 Si 1.86803 * 119.99897 * 17.50690 * 6 4 2 9 9 H 1.48494 * 109.47067 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.46888 * 300.00397 * 8 6 4 11 11 H 1.48496 * 109.47029 * 60.00075 * 8 6 4 12 12 C 1.50703 * 109.46967 * 120.00016 * 2 1 3 13 13 O 1.21277 * 119.99930 * 103.40266 * 12 2 1 14 14 N 1.34774 * 119.99832 * 283.39771 * 12 2 1 15 15 C 1.46394 * 119.72577 * 5.37494 * 14 12 2 16 16 C 1.53834 * 114.94841 * 137.45660 * 15 14 12 17 17 S 1.79951 * 111.13956 * 316.95374 * 16 15 14 18 18 C 1.82226 * 103.23954 * 83.99679 * 17 16 15 19 19 C 1.45819 * 112.65231 * 286.04300 * 18 17 16 20 20 H 1.09000 * 108.72532 * 304.14397 * 19 18 17 21 21 C 1.53000 * 108.72010 * 186.10787 * 19 18 17 22 22 C 1.44680 * 119.72503 * 185.09908 * 14 12 2 23 23 H 1.09002 * 109.47349 * 301.61695 * 1 2 3 24 24 H 1.08997 * 109.47407 * 61.62287 * 1 2 3 25 25 H 1.09000 * 109.47172 * 181.62002 * 1 2 3 26 26 H 0.97003 * 119.99848 * 354.92622 * 7 6 4 27 27 H 1.09000 * 108.38966 * 258.87481 * 15 14 12 28 28 H 1.08998 * 108.38867 * 16.21761 * 15 14 12 29 29 H 1.08999 * 109.14511 * 77.38234 * 16 15 14 30 30 H 1.08996 * 109.14290 * 196.58513 * 16 15 14 31 31 H 1.08995 * 108.84817 * 46.86901 * 18 17 16 32 32 H 1.08997 * 108.84047 * 165.33241 * 18 17 16 33 33 H 1.09000 * 109.47076 * 60.00148 * 21 19 18 34 34 H 1.08997 * 109.47186 * 180.02562 * 21 19 18 35 35 H 1.09001 * 109.46911 * 300.00628 * 21 19 18 36 36 H 1.08997 * 109.47328 * 38.51061 * 22 14 12 37 37 H 1.08997 * 109.47236 * 158.53027 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5800 -1.6362 -1.1337 6 6 1.7927 -0.1786 -2.4797 7 7 1.9118 -0.9337 -3.5498 8 14 1.2988 1.6147 -2.6523 9 1 1.1002 1.9374 -4.0881 10 1 0.0337 1.8531 -1.9121 11 1 2.3695 2.4789 -2.0938 12 6 2.0323 -0.7104 1.2305 13 8 2.4639 -1.8405 1.1445 14 7 2.0019 -0.0898 2.4265 15 6 1.3727 1.2266 2.5454 16 6 0.4933 1.4152 3.7934 17 16 -0.5317 -0.0338 4.0900 18 6 0.5772 -1.1479 5.0119 19 6 1.5972 -1.7532 4.1636 20 1 1.1053 -2.2703 3.3397 21 6 2.3756 -2.7802 4.9884 22 6 2.5861 -0.7329 3.5834 23 1 -0.3634 0.5387 0.8751 24 1 -0.3634 0.4884 -0.9041 25 1 -0.3633 -1.0272 0.0291 26 1 2.2389 -1.8432 -3.4677 27 1 2.1576 1.9828 2.5604 28 1 0.7540 1.3929 1.6636 29 1 1.1333 1.5837 4.6595 30 1 -0.1496 2.2835 3.6498 31 1 1.0680 -0.5808 5.8028 32 1 -0.0177 -1.9408 5.4651 33 1 1.6924 -3.5482 5.3509 34 1 3.1426 -3.2404 4.3654 35 1 2.8467 -2.2833 5.8365 36 1 3.5009 -1.2475 3.2898 37 1 2.8178 0.0184 4.3384 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597566191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:04 Heat of formation + Delta-G solvation = -39.308650 kcal Electronic energy + Delta-G solvation = -18355.695115 eV Core-core repulsion = 15645.121323 eV Total energy + Delta-G solvation = -2710.573792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.73383 -36.74803 -34.87605 -33.64869 -31.06681 -30.67835 -27.41901 -26.51010 -24.84166 -23.30685 -21.86297 -20.53671 -18.39190 -17.30444 -16.65054 -16.29341 -16.08637 -15.02144 -14.68527 -14.46781 -13.79077 -13.50663 -13.33571 -13.11987 -12.95459 -12.72017 -12.42224 -11.91087 -11.73152 -11.60077 -11.50873 -11.15213 -10.99230 -10.90642 -10.73592 -10.41459 -10.09052 -9.79842 -9.70748 -8.85960 -8.68834 -8.21709 -8.14208 -7.63960 -6.42783 -3.99933 1.68986 2.51514 3.34156 3.39735 3.47990 3.56303 3.63877 4.50058 4.56794 4.68446 4.80532 4.91064 5.10132 5.28606 5.30304 5.31944 5.42354 5.55310 5.57703 5.60963 5.75426 5.80964 5.90136 6.06234 6.18570 6.29461 6.34305 6.50925 6.65063 6.87528 7.10697 7.32722 7.77179 8.17870 8.50065 9.05687 9.10780 9.68595 10.99258 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.007276 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.879013 B = 3847.455591 C = 4386.546723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.005 3.995 3 H 0.037 0.963 4 C -0.588 4.588 5 H 0.072 0.928 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 1.042 2.958 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.284 1.284 12 C 0.536 3.464 13 O -0.530 6.530 14 N -0.618 5.618 15 C 0.099 3.901 16 C -0.102 4.102 17 S -0.247 6.247 18 C -0.066 4.066 19 C -0.118 4.118 20 H 0.089 0.911 21 C -0.139 4.139 22 C 0.122 3.878 23 H 0.035 0.965 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.269 0.731 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 5.543 18.679 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 H 0.054 0.946 4 C -0.626 4.626 5 H 0.090 0.910 6 C -0.175 4.175 7 N -0.539 5.539 8 Si 0.870 3.130 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.210 1.210 12 C 0.327 3.673 13 O -0.404 6.404 14 N -0.352 5.352 15 C -0.027 4.027 16 C -0.252 4.252 17 S -0.018 6.018 18 C -0.214 4.214 19 C -0.139 4.139 20 H 0.107 0.893 21 C -0.199 4.199 22 C -0.002 4.002 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.666 5.923 17.187 18.545 hybrid contribution 1.726 -0.884 1.635 2.536 sum -1.940 5.040 18.822 19.582 Atomic orbital electron populations 1.22278 0.96618 1.01502 1.00059 1.19167 0.93851 0.96432 0.92200 0.94564 1.21934 1.40183 1.10743 0.89779 0.90984 1.25740 0.94860 1.04880 0.92048 1.70827 1.41639 1.10028 1.31444 0.84111 0.76956 0.75578 0.76328 1.20993 1.19873 1.21014 1.21436 0.76159 0.86226 0.83524 1.90549 1.45568 1.18725 1.85597 1.47651 1.59269 1.19437 1.08884 1.21824 0.96622 0.85163 0.99057 1.23797 1.00822 0.99318 1.01215 1.86699 1.22377 1.17234 1.75494 1.22241 0.99217 1.00650 0.99278 1.20578 0.96546 0.97731 0.99069 0.89269 1.21837 1.00334 0.98236 0.99515 1.21119 0.96243 0.94802 0.88029 0.94670 0.91900 0.93012 0.92075 0.91840 0.88002 0.90000 0.86717 0.90541 0.88086 0.92595 0.91802 0.92906 0.90200 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.52 37.16 0.32 -2.88 16 2 C 0.01 0.13 1.36 -92.92 -0.13 0.00 16 3 H 0.04 0.82 6.08 -51.93 -0.32 0.51 16 4 C -0.59 -17.18 8.64 -34.44 -0.30 -17.48 16 5 H 0.07 2.38 7.10 -52.49 -0.37 2.01 16 6 C 0.03 0.86 5.32 -17.82 -0.09 0.77 16 7 N -0.91 -28.31 13.70 55.43 0.76 -27.55 16 8 Si 1.04 24.56 26.34 -169.99 -4.48 20.08 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.27 -5.76 5.62 56.52 0.32 -5.44 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.54 12.10 6.57 -10.98 -0.07 12.03 16 13 O -0.53 -13.90 14.95 5.56 0.08 -13.82 16 14 N -0.62 -10.60 2.42 -174.39 -0.42 -11.02 16 15 C 0.10 1.37 5.44 -3.67 -0.02 1.35 16 16 C -0.10 -1.12 5.90 37.59 0.22 -0.90 16 17 S -0.25 -3.27 21.63 -107.50 -2.32 -5.60 16 18 C -0.07 -0.75 5.00 33.76 0.17 -0.58 16 19 C -0.12 -1.58 2.29 -93.77 -0.22 -1.79 16 20 H 0.09 1.56 7.51 -51.93 -0.39 1.17 16 21 C -0.14 -1.53 8.94 37.16 0.33 -1.19 16 22 C 0.12 1.77 4.56 -4.77 -0.02 1.75 16 23 H 0.03 0.64 5.86 -51.93 -0.30 0.34 16 24 H 0.06 1.39 4.77 -51.93 -0.25 1.14 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.27 8.51 8.73 -40.82 -0.36 8.15 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.55 3.92 -51.93 -0.20 1.35 16 29 H 0.08 0.75 7.91 -51.80 -0.41 0.34 16 30 H 0.11 1.05 8.14 -51.79 -0.42 0.63 16 31 H 0.08 0.73 8.11 -51.93 -0.42 0.30 16 32 H 0.10 1.06 8.03 -51.92 -0.42 0.64 16 33 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 37 H 0.06 0.75 7.51 -51.93 -0.39 0.36 16 LS Contribution 293.03 15.07 4.42 4.42 Total: -1.00 -33.24 293.03 -7.39 -40.64 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.62 Total: 1.78 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 0.19 Total: -8.93 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.34 Total: -38.57 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.48 Total: 20.08 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.32 Total: -5.60 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.24 -7.39 -40.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597566191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.328 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds