Wall clock time and date at job start Mon Mar 30 2020 04:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47463 * 2 1 4 4 C 1.50708 * 109.47147 * 119.99822 * 2 1 3 5 5 H 1.07997 * 120.00119 * 119.99367 * 4 2 1 6 6 C 1.37875 * 119.99779 * 299.99790 * 4 2 1 7 7 N 1.31517 * 119.99941 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00032 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47087 * 90.00119 * 8 6 4 10 10 H 1.48504 * 109.47169 * 209.99661 * 8 6 4 11 11 H 1.48502 * 109.47245 * 329.99830 * 8 6 4 12 12 C 1.50702 * 109.46923 * 239.99485 * 2 1 3 13 13 O 1.21280 * 120.00003 * 267.41552 * 12 2 1 14 14 N 1.34777 * 119.99695 * 87.41845 * 12 2 1 15 15 C 1.46392 * 119.72600 * 354.44320 * 14 12 2 16 16 C 1.53825 * 114.94857 * 222.52364 * 15 14 12 17 17 S 1.79946 * 111.14296 * 43.04793 * 16 15 14 18 18 C 1.82219 * 103.24218 * 276.00379 * 17 16 15 19 19 C 1.45829 * 112.57301 * 74.00329 * 18 17 16 20 20 H 1.09000 * 108.71997 * 55.80786 * 19 18 17 21 21 C 1.52995 * 108.71829 * 173.84211 * 19 18 17 22 22 C 1.44677 * 119.72268 * 174.42398 * 14 12 2 23 23 H 1.08996 * 109.47003 * 61.38772 * 1 2 3 24 24 H 1.08997 * 109.47638 * 181.38794 * 1 2 3 25 25 H 1.08999 * 109.46943 * 301.38976 * 1 2 3 26 26 H 0.96997 * 119.99664 * 179.97438 * 7 6 4 27 27 H 1.08998 * 108.38873 * 101.10523 * 15 14 12 28 28 H 1.09000 * 108.25219 * 343.84079 * 15 14 12 29 29 H 1.09003 * 109.14733 * 282.61491 * 16 15 14 30 30 H 1.09008 * 109.14472 * 163.47234 * 16 15 14 31 31 H 1.08994 * 108.84763 * 194.77519 * 18 17 16 32 32 H 1.09006 * 108.84412 * 313.24386 * 18 17 16 33 33 H 1.09000 * 109.47401 * 59.99950 * 21 19 18 34 34 H 1.09001 * 109.47333 * 180.02562 * 21 19 18 35 35 H 1.08996 * 109.47650 * 300.00273 * 21 19 18 36 36 H 1.08999 * 109.47466 * 201.49045 * 22 14 12 37 37 H 1.09001 * 109.47656 * 321.50633 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8595 3.5566 8 14 0.6248 1.2791 2.6540 9 1 -0.8028 0.8727 2.6998 10 1 0.9759 1.9953 3.9067 11 1 0.8471 2.1765 1.4919 12 6 2.0323 -0.7105 -1.2304 13 8 2.2791 -1.8972 -1.1872 14 7 2.2073 -0.0272 -2.3789 15 6 1.7935 1.3747 -2.4597 16 6 1.0743 1.7649 -3.7623 17 16 -0.1205 0.5090 -4.2452 18 6 0.8942 -0.7089 -5.1438 19 6 1.7268 -1.5095 -4.2536 20 1 1.0867 -1.9888 -3.5128 21 6 2.4197 -2.5977 -5.0760 22 6 2.8030 -0.6852 -3.5214 23 1 -0.3633 0.4921 -0.9021 24 1 -0.3634 -1.0273 0.0249 25 1 -0.3633 0.5353 0.8773 26 1 1.9032 -0.5278 4.4375 27 1 2.6793 2.0012 -2.3550 28 1 1.1265 1.5825 -1.6231 29 1 1.8116 1.8812 -4.5567 30 1 0.5567 2.7128 -3.6147 31 1 0.2347 -1.3736 -5.7016 32 1 1.5378 -0.1805 -5.8472 33 1 3.0387 -2.1340 -5.8441 34 1 3.0457 -3.2045 -4.4217 35 1 1.6682 -3.2303 -5.5483 36 1 3.2124 0.0636 -4.1994 37 1 3.6017 -1.3460 -3.1846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597566192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:05 Heat of formation + Delta-G solvation = -34.382052 kcal Electronic energy + Delta-G solvation = -18335.092566 eV Core-core repulsion = 15624.732407 eV Total energy + Delta-G solvation = -2710.360159 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.71848 -36.73925 -34.83013 -33.69135 -31.18011 -30.67731 -27.40723 -26.60194 -25.13409 -23.37003 -22.13922 -20.58472 -18.33332 -16.92169 -16.69990 -16.21641 -15.81055 -15.03957 -14.91435 -14.54374 -14.04129 -13.45257 -13.32093 -13.16568 -12.84364 -12.69217 -12.49969 -12.25271 -11.77277 -11.70238 -11.43018 -11.17574 -11.11792 -10.87348 -10.73437 -10.56397 -10.23574 -9.77329 -9.61427 -9.10300 -8.67046 -8.55157 -8.21059 -7.65576 -6.05164 -4.04964 1.68343 2.50917 3.25526 3.31120 3.37083 3.47362 3.59312 4.38618 4.56732 4.68488 4.81054 4.90373 5.10671 5.24674 5.30322 5.32060 5.42837 5.55942 5.58459 5.61093 5.74561 5.81571 5.90043 6.05774 6.18408 6.23259 6.34636 6.42287 6.55737 6.71795 7.07971 7.22007 7.56822 7.96894 8.53666 9.06673 9.10037 9.53870 11.07939 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028750 B = 0.007291 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.692369 B = 3839.616850 C = 4412.733605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.002 4.002 3 H 0.044 0.956 4 C -0.503 4.503 5 H 0.087 0.913 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.538 3.462 13 O -0.527 6.527 14 N -0.618 5.618 15 C 0.106 3.894 16 C -0.102 4.102 17 S -0.249 6.249 18 C -0.065 4.065 19 C -0.118 4.118 20 H 0.090 0.910 21 C -0.139 4.139 22 C 0.123 3.877 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.264 0.736 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 5.829 -18.429 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.105 0.895 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.329 3.671 13 O -0.401 6.401 14 N -0.352 5.352 15 C -0.020 4.020 16 C -0.251 4.251 17 S -0.020 6.020 18 C -0.213 4.213 19 C -0.139 4.139 20 H 0.108 0.892 21 C -0.200 4.200 22 C -0.002 4.002 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.622 5.185 -17.986 18.901 hybrid contribution 0.650 0.976 -0.085 1.176 sum -1.973 6.161 -18.071 19.194 Atomic orbital electron populations 1.22083 0.96787 1.01956 0.99196 1.19327 0.93548 0.97096 0.92429 0.93854 1.20868 1.32199 1.13702 0.87362 0.89481 1.24960 0.95753 0.96639 0.95707 1.69883 1.45516 1.40144 0.97869 0.86897 0.80889 0.83725 0.76960 1.20423 1.22331 1.19276 1.21251 0.75364 0.87194 0.83297 1.90573 1.49493 1.15662 1.84357 1.47608 1.63377 1.11635 1.12623 1.21689 0.99492 0.83049 0.97773 1.23803 1.00153 1.00615 1.00578 1.86677 1.17576 1.24514 1.73261 1.22244 1.00653 0.99093 0.99332 1.20684 0.98126 0.96949 0.98147 0.89207 1.21840 1.00505 0.97997 0.99626 1.21255 0.95117 0.96012 0.87769 0.94232 0.92143 0.93497 0.92555 0.91689 0.88666 0.89927 0.86752 0.88060 0.90526 0.92918 0.91716 0.92635 0.91659 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.37 37.16 0.31 -2.81 16 2 C 0.00 -0.06 1.36 -92.92 -0.13 -0.18 16 3 H 0.04 0.98 5.83 -51.93 -0.30 0.68 16 4 C -0.50 -14.64 8.91 -34.44 -0.31 -14.94 16 5 H 0.09 2.87 7.32 -52.49 -0.38 2.49 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 8 Si 0.89 21.51 24.36 -169.99 -4.14 17.37 16 9 H -0.28 -6.60 6.88 56.52 0.39 -6.21 16 10 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.27 -5.98 6.53 56.52 0.37 -5.61 16 12 C 0.54 11.92 6.44 -10.98 -0.07 11.85 16 13 O -0.53 -13.48 15.22 5.56 0.08 -13.40 16 14 N -0.62 -10.44 2.40 -174.02 -0.42 -10.85 16 15 C 0.11 1.46 5.56 -3.67 -0.02 1.44 16 16 C -0.10 -1.11 5.90 37.59 0.22 -0.89 16 17 S -0.25 -3.23 21.62 -107.50 -2.32 -5.56 16 18 C -0.07 -0.72 5.00 33.77 0.17 -0.55 16 19 C -0.12 -1.53 2.29 -93.46 -0.21 -1.75 16 20 H 0.09 1.52 7.51 -51.93 -0.39 1.13 16 21 C -0.14 -1.49 8.94 37.15 0.33 -1.16 16 22 C 0.12 1.74 4.60 -4.46 -0.02 1.72 16 23 H 0.04 0.74 7.03 -51.93 -0.37 0.37 16 24 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 25 H 0.05 1.04 3.30 -51.93 -0.17 0.87 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.45 4.64 -51.93 -0.24 1.21 16 29 H 0.08 0.75 7.91 -51.80 -0.41 0.34 16 30 H 0.11 1.05 8.14 -51.79 -0.42 0.63 16 31 H 0.10 1.03 8.04 -51.93 -0.42 0.61 16 32 H 0.08 0.71 8.11 -51.92 -0.42 0.29 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 36 H 0.06 0.74 7.52 -51.93 -0.39 0.35 16 37 H 0.08 1.29 7.45 -51.93 -0.39 0.90 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -32.95 292.56 -7.03 -39.97 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.59 Total: 0.37 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 0.18 Total: -5.30 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.36 Total: -37.88 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.37 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.32 Total: -5.56 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.95 -7.03 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597566192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.592 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds