Wall clock time and date at job start Mon Mar 30 2020 04:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47463 * 2 1 4 4 C 1.50708 * 109.47147 * 119.99822 * 2 1 3 5 5 H 1.07997 * 120.00119 * 119.99367 * 4 2 1 6 6 C 1.37875 * 119.99779 * 299.99790 * 4 2 1 7 7 N 1.31517 * 119.99941 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00032 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47087 * 90.00119 * 8 6 4 10 10 H 1.48504 * 109.47169 * 209.99661 * 8 6 4 11 11 H 1.48502 * 109.47245 * 329.99830 * 8 6 4 12 12 C 1.50702 * 109.46923 * 239.99485 * 2 1 3 13 13 O 1.21280 * 120.00003 * 267.41552 * 12 2 1 14 14 N 1.34777 * 119.99695 * 87.41845 * 12 2 1 15 15 C 1.46392 * 119.72600 * 354.44320 * 14 12 2 16 16 C 1.53825 * 114.94857 * 222.52364 * 15 14 12 17 17 S 1.79946 * 111.14296 * 43.04793 * 16 15 14 18 18 C 1.82219 * 103.24218 * 276.00379 * 17 16 15 19 19 C 1.45829 * 112.57301 * 74.00329 * 18 17 16 20 20 H 1.09000 * 108.71997 * 55.80786 * 19 18 17 21 21 C 1.52995 * 108.71829 * 173.84211 * 19 18 17 22 22 C 1.44677 * 119.72268 * 174.42398 * 14 12 2 23 23 H 1.08996 * 109.47003 * 61.38772 * 1 2 3 24 24 H 1.08997 * 109.47638 * 181.38794 * 1 2 3 25 25 H 1.08999 * 109.46943 * 301.38976 * 1 2 3 26 26 H 0.96997 * 119.99664 * 179.97438 * 7 6 4 27 27 H 1.08998 * 108.38873 * 101.10523 * 15 14 12 28 28 H 1.09000 * 108.25219 * 343.84079 * 15 14 12 29 29 H 1.09003 * 109.14733 * 282.61491 * 16 15 14 30 30 H 1.09008 * 109.14472 * 163.47234 * 16 15 14 31 31 H 1.08994 * 108.84763 * 194.77519 * 18 17 16 32 32 H 1.09006 * 108.84412 * 313.24386 * 18 17 16 33 33 H 1.09000 * 109.47401 * 59.99950 * 21 19 18 34 34 H 1.09001 * 109.47333 * 180.02562 * 21 19 18 35 35 H 1.08996 * 109.47650 * 300.00273 * 21 19 18 36 36 H 1.08999 * 109.47466 * 201.49045 * 22 14 12 37 37 H 1.09001 * 109.47656 * 321.50633 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8595 3.5566 8 14 0.6248 1.2791 2.6540 9 1 -0.8028 0.8727 2.6998 10 1 0.9759 1.9953 3.9067 11 1 0.8471 2.1765 1.4919 12 6 2.0323 -0.7105 -1.2304 13 8 2.2791 -1.8972 -1.1872 14 7 2.2073 -0.0272 -2.3789 15 6 1.7935 1.3747 -2.4597 16 6 1.0743 1.7649 -3.7623 17 16 -0.1205 0.5090 -4.2452 18 6 0.8942 -0.7089 -5.1438 19 6 1.7268 -1.5095 -4.2536 20 1 1.0867 -1.9888 -3.5128 21 6 2.4197 -2.5977 -5.0760 22 6 2.8030 -0.6852 -3.5214 23 1 -0.3633 0.4921 -0.9021 24 1 -0.3634 -1.0273 0.0249 25 1 -0.3633 0.5353 0.8773 26 1 1.9032 -0.5278 4.4375 27 1 2.6793 2.0012 -2.3550 28 1 1.1265 1.5825 -1.6231 29 1 1.8116 1.8812 -4.5567 30 1 0.5567 2.7128 -3.6147 31 1 0.2347 -1.3736 -5.7016 32 1 1.5378 -0.1805 -5.8472 33 1 3.0387 -2.1340 -5.8441 34 1 3.0457 -3.2045 -4.4217 35 1 1.6682 -3.2303 -5.5483 36 1 3.2124 0.0636 -4.1994 37 1 3.6017 -1.3460 -3.1846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597566192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:05 Heat of formation + Delta-G solvation = -56.990311 kcal Electronic energy + Delta-G solvation = -18336.072934 eV Core-core repulsion = 15624.732407 eV Total energy + Delta-G solvation = -2711.340527 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.23196 -38.08539 -36.23237 -35.53492 -33.25086 -31.76014 -28.28562 -27.86580 -27.20374 -24.74340 -23.63978 -21.74721 -19.82102 -18.88488 -18.05557 -17.50728 -17.23655 -16.67746 -16.27055 -15.62150 -15.51341 -15.01376 -14.59230 -14.51170 -14.20389 -14.13007 -13.87513 -13.50220 -13.28112 -12.90344 -12.78375 -12.67569 -12.51747 -12.28273 -12.13416 -11.99404 -11.74139 -11.48563 -11.25753 -10.79220 -10.66507 -10.39718 -9.57586 -8.62980 -8.29776 -6.37340 0.80866 1.32551 1.37221 1.49190 1.64111 1.83124 2.19369 2.32552 3.04036 3.59219 3.68646 3.81182 3.95477 4.09524 4.20363 4.37791 4.38825 4.45806 4.56315 4.61238 4.65602 4.67953 4.72761 4.75185 4.77776 4.87671 4.92699 5.09299 5.25973 5.30346 5.40512 5.50823 5.79539 6.20052 6.48616 6.74531 7.23510 7.44651 8.88065 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028750 B = 0.007291 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.692369 B = 3839.616850 C = 4412.733605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.002 4.002 3 H 0.067 0.933 4 C -0.519 4.519 5 H 0.023 0.977 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.956 3.044 9 H -0.266 1.266 10 H -0.294 1.294 11 H -0.226 1.226 12 C 0.533 3.467 13 O -0.580 6.580 14 N -0.606 5.606 15 C 0.093 3.907 16 C -0.085 4.085 17 S -0.303 6.303 18 C -0.055 4.055 19 C -0.109 4.109 20 H 0.041 0.959 21 C -0.135 4.135 22 C 0.117 3.883 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.048 0.952 26 H 0.268 0.732 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 9.329 -21.354 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 H 0.084 0.916 4 C -0.557 4.557 5 H 0.041 0.959 6 C -0.188 4.188 7 N -0.591 5.591 8 Si 0.780 3.220 9 H -0.192 1.192 10 H -0.222 1.222 11 H -0.149 1.149 12 C 0.323 3.677 13 O -0.459 6.459 14 N -0.338 5.338 15 C -0.032 4.032 16 C -0.233 4.233 17 S -0.074 6.074 18 C -0.202 4.202 19 C -0.130 4.130 20 H 0.060 0.940 21 C -0.195 4.195 22 C -0.007 4.007 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.157 0.843 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.467 8.724 -20.982 22.987 hybrid contribution 1.011 -0.210 0.797 1.305 sum -2.456 8.514 -20.185 22.044 Atomic orbital electron populations 1.21954 0.95070 1.01115 1.01000 1.19243 0.94829 0.97365 0.90954 0.91564 1.21019 1.31842 1.12421 0.90453 0.95850 1.26001 0.97267 1.00757 0.94734 1.70071 1.47549 1.42714 0.98742 0.85754 0.78619 0.79201 0.78392 1.19206 1.22198 1.14887 1.21011 0.75401 0.86599 0.84657 1.90549 1.52068 1.17842 1.85397 1.47487 1.61862 1.12858 1.11622 1.22022 1.00795 0.80970 0.99372 1.23813 0.99891 1.00204 0.99430 1.86940 1.20038 1.26301 1.74108 1.22223 1.00506 0.98664 0.98803 1.20547 0.97412 0.97475 0.97607 0.94002 1.21803 1.00713 0.97377 0.99578 1.21495 0.94882 0.96898 0.87379 0.90580 0.94383 0.93344 0.92302 0.89064 0.89957 0.87081 0.84322 0.87151 0.87330 0.89911 0.93852 0.91593 0.87356 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.37 71.98 0.60 -5.08 16 2 C 0.00 -0.11 1.36 -12.28 -0.02 -0.13 16 3 H 0.07 2.83 5.83 -2.39 -0.01 2.82 16 4 C -0.52 -31.63 8.91 25.60 0.23 -31.40 16 5 H 0.02 1.67 7.32 -2.91 -0.02 1.65 16 6 C 0.01 0.54 5.45 84.65 0.46 1.00 16 7 N -0.95 -61.58 13.96 21.45 0.30 -61.28 16 8 Si 0.96 43.58 24.36 68.60 1.67 45.25 16 9 H -0.27 -11.64 6.88 99.48 0.68 -10.95 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.23 -8.75 6.53 99.48 0.65 -8.10 16 12 C 0.53 24.08 6.44 87.66 0.56 24.64 16 13 O -0.58 -31.66 15.22 -3.03 -0.05 -31.70 16 14 N -0.61 -19.52 2.40 -822.88 -1.98 -21.49 16 15 C 0.09 2.19 5.56 86.68 0.48 2.67 16 16 C -0.08 -1.40 5.90 72.26 0.43 -0.97 16 17 S -0.30 -6.88 21.62 -56.49 -1.22 -8.10 16 18 C -0.05 -1.02 5.00 69.78 0.35 -0.67 16 19 C -0.11 -2.68 2.29 -12.63 -0.03 -2.71 16 20 H 0.04 1.45 7.51 -2.39 -0.02 1.43 16 21 C -0.13 -2.66 8.94 71.98 0.64 -2.02 16 22 C 0.12 3.10 4.60 87.08 0.40 3.50 16 23 H 0.08 2.64 7.03 -2.39 -0.02 2.63 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 25 H 0.05 2.02 3.30 -2.39 -0.01 2.02 16 26 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 2.17 4.64 -2.39 -0.01 2.16 16 29 H 0.11 1.27 7.91 -2.47 -0.02 1.25 16 30 H 0.14 1.72 8.14 -2.47 -0.02 1.70 16 31 H 0.11 1.90 8.04 -2.39 -0.02 1.88 16 32 H 0.11 1.40 8.11 -2.39 -0.02 1.38 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.04 1.04 8.03 -2.39 -0.02 1.02 16 35 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 36 H 0.11 1.96 7.52 -2.39 -0.02 1.94 16 37 H 0.06 1.83 7.45 -2.39 -0.02 1.81 16 Total: -1.00 -79.30 292.56 3.81 -75.49 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.97 Total: 13.00 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 4.11 Total: -11.16 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -1.68 Total: -82.78 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.05 Total: -31.70 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.67 Total: 45.25 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.22 Total: -8.10 kcal Total: -79.30 3.81 -75.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597566192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.496 kcal (2) G-P(sol) polarization free energy of solvation -79.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds