Wall clock time and date at job start Mon Mar 30 2020 04:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47044 * 240.00481 * 2 1 3 5 5 H 1.07995 * 119.99660 * 240.00132 * 4 2 1 6 6 C 1.37882 * 120.00038 * 59.99802 * 4 2 1 7 7 N 1.31512 * 119.99918 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00039 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46875 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47011 * 119.99882 * 8 6 4 11 11 H 1.48497 * 109.46858 * 240.00095 * 8 6 4 12 12 C 1.50693 * 109.47278 * 120.00468 * 2 1 3 13 13 O 1.21277 * 120.00205 * 119.99838 * 12 2 1 14 14 N 1.34774 * 120.00065 * 299.99850 * 12 2 1 15 15 C 1.46395 * 119.72964 * 359.97438 * 14 12 2 16 16 C 1.53824 * 114.82007 * 222.40879 * 15 14 12 17 17 S 1.79954 * 111.14407 * 43.13744 * 16 15 14 18 18 C 1.82222 * 103.24282 * 276.00395 * 17 16 15 19 19 C 1.45820 * 112.64961 * 73.93964 * 18 17 16 20 20 H 1.08995 * 108.71673 * 55.73709 * 19 18 17 21 21 C 1.52995 * 108.71885 * 173.89236 * 19 18 17 22 22 C 1.44354 * 119.50516 * 179.87827 * 14 12 2 23 23 H 1.08998 * 109.47807 * 59.99488 * 1 2 3 24 24 H 1.08995 * 109.47406 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47012 * 299.99587 * 1 2 3 26 26 H 0.97003 * 120.00031 * 179.97438 * 7 6 4 27 27 H 1.09002 * 108.38741 * 101.07719 * 15 14 12 28 28 H 1.09004 * 108.38412 * 343.74003 * 15 14 12 29 29 H 1.09001 * 109.14296 * 163.56149 * 16 15 14 30 30 H 1.08998 * 109.14580 * 282.70559 * 16 15 14 31 31 H 1.08997 * 108.84082 * 194.75854 * 18 17 16 32 32 H 1.08999 * 108.84573 * 313.22841 * 18 17 16 33 33 H 1.09000 * 109.47079 * 60.00279 * 21 19 18 34 34 H 1.08999 * 109.47659 * 180.02562 * 21 19 18 35 35 H 1.09000 * 109.47653 * 300.00491 * 21 19 18 36 36 H 1.09004 * 109.55111 * 321.57745 * 22 14 12 37 37 H 1.08993 * 109.41976 * 201.54263 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 3.1453 -2.2874 -3.6040 10 1 1.1658 -1.5863 -4.8162 11 1 3.1464 -0.1870 -4.8166 12 6 2.0323 -0.7105 1.2303 13 8 2.7295 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 0.8652 0.9410 2.5820 16 6 1.3148 1.9362 3.6654 17 16 3.0989 2.1688 3.6331 18 6 3.7200 0.7727 4.6260 19 6 3.6373 -0.4999 3.9188 20 1 4.1721 -0.4101 2.9734 21 6 4.3171 -1.5774 4.7660 22 6 2.1917 -0.9405 3.6258 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7085 1.1615 -3.4844 27 1 -0.1515 0.6208 2.8098 28 1 0.8544 1.4586 1.6228 29 1 0.8261 2.8954 3.4946 30 1 1.0215 1.5560 4.6439 31 1 4.7606 0.9628 4.8884 32 1 3.1332 0.7036 5.5420 33 1 3.8117 -1.6554 5.7285 34 1 4.2628 -2.5349 4.2480 35 1 5.3617 -1.3095 4.9248 36 1 2.1686 -2.0162 3.4509 37 1 1.5577 -0.6971 4.4783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597566193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:07 Heat of formation + Delta-G solvation = -37.939289 kcal Electronic energy + Delta-G solvation = -18263.180292 eV Core-core repulsion = 15552.665879 eV Total energy + Delta-G solvation = -2710.514412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62564 -36.61079 -34.80980 -33.60558 -30.56445 -30.47709 -27.33889 -26.27397 -25.14577 -23.36839 -21.78814 -20.47562 -18.48997 -16.67974 -16.24230 -16.13546 -15.57128 -15.09207 -14.63582 -14.37154 -13.80928 -13.43243 -13.31222 -13.22990 -12.72447 -12.43880 -12.22077 -11.73971 -11.64479 -11.37190 -11.15049 -10.97630 -10.91129 -10.67589 -10.59669 -10.37663 -10.20370 -9.92382 -9.65123 -8.91512 -8.57223 -8.26928 -8.08470 -7.52772 -5.99413 -4.01732 1.80011 2.63050 3.34795 3.42141 3.50065 3.64982 3.75778 4.50158 4.66222 4.80452 4.90239 5.03843 5.18914 5.34084 5.38671 5.40550 5.53082 5.63441 5.68608 5.71173 5.92719 6.00035 6.03027 6.15558 6.31038 6.42063 6.64423 6.86165 6.95518 7.21692 7.51141 7.77822 7.99671 8.12740 8.41889 9.06940 9.24887 9.63419 11.08422 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.006646 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.644442 B = 4211.752989 C = 4624.782849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.030 3.970 3 H 0.055 0.945 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.526 3.474 13 O -0.540 6.540 14 N -0.616 5.616 15 C 0.108 3.892 16 C -0.104 4.104 17 S -0.247 6.247 18 C -0.066 4.066 19 C -0.118 4.118 20 H 0.088 0.912 21 C -0.139 4.139 22 C 0.122 3.878 23 H 0.092 0.908 24 H 0.029 0.971 25 H 0.023 0.977 26 H 0.259 0.741 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 1.965 15.610 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 H 0.072 0.928 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.318 3.682 13 O -0.415 6.415 14 N -0.350 5.350 15 C -0.018 4.018 16 C -0.253 4.253 17 S -0.018 6.018 18 C -0.214 4.214 19 C -0.139 4.139 20 H 0.107 0.893 21 C -0.199 4.199 22 C -0.003 4.003 23 H 0.111 0.889 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.957 2.380 14.891 15.110 hybrid contribution -0.476 -1.212 -0.115 1.307 sum 0.481 1.168 14.776 14.829 Atomic orbital electron populations 1.22026 0.96751 0.99978 1.01468 1.18844 0.94020 0.96888 0.89325 0.92770 1.21188 1.30715 1.12698 0.89019 0.90823 1.24935 0.95162 0.95083 0.99053 1.69876 1.37262 1.23166 1.23344 0.86428 0.78606 0.79816 0.82601 1.19596 1.21102 1.21053 1.21964 0.78101 0.84009 0.84118 1.90521 1.37731 1.27044 1.86243 1.47570 1.53083 1.28158 1.06189 1.21914 0.92860 0.86411 1.00577 1.23859 0.95430 1.03760 1.02296 1.86729 1.05571 1.36805 1.72716 1.22228 1.04435 0.95414 0.99334 1.20667 0.98665 0.93880 1.00688 0.89340 1.21835 0.99938 0.98910 0.99222 1.21133 0.92642 0.98266 0.88256 0.88899 0.95178 0.95847 0.93082 0.91860 0.87674 0.86770 0.90231 0.88148 0.90653 0.92960 0.91831 0.92666 0.90164 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.49 37.16 0.32 -2.99 16 2 C 0.03 0.76 1.82 -92.93 -0.17 0.59 16 3 H 0.05 1.43 7.46 -51.93 -0.39 1.05 16 4 C -0.50 -14.29 8.37 -34.44 -0.29 -14.58 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.33 11.32 55.43 0.63 -24.71 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.53 12.12 6.71 -10.99 -0.07 12.05 16 13 O -0.54 -14.08 14.94 5.56 0.08 -14.00 16 14 N -0.62 -10.95 2.39 -174.35 -0.42 -11.37 16 15 C 0.11 1.61 4.40 -3.67 -0.02 1.60 16 16 C -0.10 -1.26 5.90 37.59 0.22 -1.04 16 17 S -0.25 -3.54 21.62 -107.50 -2.32 -5.86 16 18 C -0.07 -0.80 5.00 33.76 0.17 -0.63 16 19 C -0.12 -1.63 2.33 -93.53 -0.22 -1.85 16 20 H 0.09 1.59 7.66 -51.93 -0.40 1.19 16 21 C -0.14 -1.57 8.94 37.15 0.33 -1.23 16 22 C 0.12 1.82 4.59 -4.69 -0.02 1.80 16 23 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.43 4.66 -51.92 -0.24 0.19 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.06 0.84 7.59 -51.93 -0.39 0.45 16 28 H 0.11 1.79 4.87 -51.93 -0.25 1.54 16 29 H 0.11 1.20 8.14 -51.80 -0.42 0.77 16 30 H 0.08 0.81 7.91 -51.80 -0.41 0.40 16 31 H 0.10 1.11 8.04 -51.92 -0.42 0.69 16 32 H 0.07 0.76 8.11 -51.92 -0.42 0.34 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.78 8.03 -51.93 -0.42 0.37 16 35 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 36 H 0.08 1.31 7.34 -51.93 -0.38 0.93 16 37 H 0.06 0.77 7.52 -51.93 -0.39 0.37 16 LS Contribution 295.85 15.07 4.46 4.46 Total: -1.00 -31.12 295.85 -8.04 -39.16 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.60 Total: 0.02 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 0.16 Total: -4.75 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.21 Total: -36.07 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.32 Total: -5.86 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.12 -8.04 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597566193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.221 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds