Wall clock time and date at job start Mon Mar 30 2020 04:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47044 * 240.00481 * 2 1 3 5 5 H 1.07995 * 119.99660 * 240.00132 * 4 2 1 6 6 C 1.37882 * 120.00038 * 59.99802 * 4 2 1 7 7 N 1.31512 * 119.99918 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00039 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46875 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47011 * 119.99882 * 8 6 4 11 11 H 1.48497 * 109.46858 * 240.00095 * 8 6 4 12 12 C 1.50693 * 109.47278 * 120.00468 * 2 1 3 13 13 O 1.21277 * 120.00205 * 119.99838 * 12 2 1 14 14 N 1.34774 * 120.00065 * 299.99850 * 12 2 1 15 15 C 1.46395 * 119.72964 * 359.97438 * 14 12 2 16 16 C 1.53824 * 114.82007 * 222.40879 * 15 14 12 17 17 S 1.79954 * 111.14407 * 43.13744 * 16 15 14 18 18 C 1.82222 * 103.24282 * 276.00395 * 17 16 15 19 19 C 1.45820 * 112.64961 * 73.93964 * 18 17 16 20 20 H 1.08995 * 108.71673 * 55.73709 * 19 18 17 21 21 C 1.52995 * 108.71885 * 173.89236 * 19 18 17 22 22 C 1.44354 * 119.50516 * 179.87827 * 14 12 2 23 23 H 1.08998 * 109.47807 * 59.99488 * 1 2 3 24 24 H 1.08995 * 109.47406 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47012 * 299.99587 * 1 2 3 26 26 H 0.97003 * 120.00031 * 179.97438 * 7 6 4 27 27 H 1.09002 * 108.38741 * 101.07719 * 15 14 12 28 28 H 1.09004 * 108.38412 * 343.74003 * 15 14 12 29 29 H 1.09001 * 109.14296 * 163.56149 * 16 15 14 30 30 H 1.08998 * 109.14580 * 282.70559 * 16 15 14 31 31 H 1.08997 * 108.84082 * 194.75854 * 18 17 16 32 32 H 1.08999 * 108.84573 * 313.22841 * 18 17 16 33 33 H 1.09000 * 109.47079 * 60.00279 * 21 19 18 34 34 H 1.08999 * 109.47659 * 180.02562 * 21 19 18 35 35 H 1.09000 * 109.47653 * 300.00491 * 21 19 18 36 36 H 1.09004 * 109.55111 * 321.57745 * 22 14 12 37 37 H 1.08993 * 109.41976 * 201.54263 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 3.1453 -2.2874 -3.6040 10 1 1.1658 -1.5863 -4.8162 11 1 3.1464 -0.1870 -4.8166 12 6 2.0323 -0.7105 1.2303 13 8 2.7295 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 0.8652 0.9410 2.5820 16 6 1.3148 1.9362 3.6654 17 16 3.0989 2.1688 3.6331 18 6 3.7200 0.7727 4.6260 19 6 3.6373 -0.4999 3.9188 20 1 4.1721 -0.4101 2.9734 21 6 4.3171 -1.5774 4.7660 22 6 2.1917 -0.9405 3.6258 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7085 1.1615 -3.4844 27 1 -0.1515 0.6208 2.8098 28 1 0.8544 1.4586 1.6228 29 1 0.8261 2.8954 3.4946 30 1 1.0215 1.5560 4.6439 31 1 4.7606 0.9628 4.8884 32 1 3.1332 0.7036 5.5420 33 1 3.8117 -1.6554 5.7285 34 1 4.2628 -2.5349 4.2480 35 1 5.3617 -1.3095 4.9248 36 1 2.1686 -2.0162 3.4509 37 1 1.5577 -0.6971 4.4783 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597566193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:06 Heat of formation + Delta-G solvation = -56.852832 kcal Electronic energy + Delta-G solvation = -18264.000444 eV Core-core repulsion = 15552.665879 eV Total energy + Delta-G solvation = -2711.334565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20613 -38.02614 -36.31745 -35.48857 -32.47576 -31.75605 -28.27922 -27.72153 -27.09958 -24.88129 -23.34601 -21.74483 -20.02843 -18.43766 -17.85185 -17.40586 -17.22494 -16.62163 -16.34808 -15.51967 -15.27356 -14.88686 -14.80881 -14.49936 -14.15246 -13.70238 -13.56778 -13.28512 -12.96504 -12.83251 -12.78232 -12.62402 -12.51950 -12.19350 -12.05934 -12.01029 -11.90039 -11.73583 -11.02457 -10.66079 -10.59268 -10.23978 -9.53634 -8.64311 -8.15441 -6.25412 0.80276 1.37509 1.39125 1.52752 1.64886 1.91681 2.24911 2.46687 3.13806 3.60193 3.70949 3.83801 4.04248 4.12630 4.25227 4.43756 4.45770 4.60389 4.63381 4.68736 4.74215 4.75122 4.80272 4.87647 4.96665 5.02293 5.10218 5.25829 5.31087 5.49249 5.73192 5.81627 5.97760 6.21235 6.56735 6.83085 7.40099 7.52317 8.90644 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.006646 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.644442 B = 4211.752989 C = 4624.782849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.029 3.971 3 H 0.034 0.966 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.274 1.274 12 C 0.524 3.476 13 O -0.583 6.583 14 N -0.604 5.604 15 C 0.098 3.902 16 C -0.084 4.084 17 S -0.314 6.314 18 C -0.052 4.052 19 C -0.110 4.110 20 H 0.037 0.963 21 C -0.133 4.133 22 C 0.116 3.884 23 H 0.069 0.931 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.265 0.735 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 2.413 17.875 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.008 3.992 3 H 0.052 0.948 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.200 1.200 12 C 0.315 3.685 13 O -0.463 6.463 14 N -0.336 5.336 15 C -0.026 4.026 16 C -0.233 4.233 17 S -0.085 6.085 18 C -0.200 4.200 19 C -0.132 4.132 20 H 0.055 0.945 21 C -0.193 4.193 22 C -0.007 4.007 23 H 0.088 0.912 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.063 2.869 17.196 17.434 hybrid contribution -0.166 -1.321 -0.781 1.543 sum -0.229 1.549 16.416 16.490 Atomic orbital electron populations 1.21842 0.95019 0.99454 1.02385 1.18705 0.95376 0.95437 0.89651 0.94786 1.21330 1.31452 1.12619 0.91321 0.93650 1.25581 0.95218 0.95766 1.01347 1.69952 1.37246 1.23561 1.24193 0.85575 0.78422 0.78586 0.79507 1.20578 1.19685 1.19976 1.21514 0.77985 0.83515 0.85476 1.90489 1.39714 1.28904 1.87159 1.47410 1.52202 1.28641 1.05347 1.22124 0.93892 0.85789 1.00829 1.23839 0.93018 1.03854 1.02615 1.87058 1.08726 1.38687 1.74052 1.22221 1.05652 0.92688 0.99402 1.20550 0.97439 0.96045 0.99125 0.94468 1.21789 1.00742 0.96915 0.99827 1.21399 0.94159 0.97092 0.88099 0.91239 0.96175 0.91626 0.92615 0.88931 0.90248 0.84807 0.86856 0.87145 0.87191 0.89793 0.93569 0.91647 0.91921 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.49 71.98 0.61 -5.34 16 2 C 0.03 1.53 1.82 -12.29 -0.02 1.50 16 3 H 0.03 1.89 7.46 -2.38 -0.02 1.87 16 4 C -0.53 -31.67 8.37 25.60 0.21 -31.45 16 5 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -52.08 11.32 21.45 0.24 -51.83 16 8 Si 0.95 46.04 29.54 68.60 2.03 48.07 16 9 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 12 C 0.52 24.87 6.71 87.66 0.59 25.46 16 13 O -0.58 -31.94 14.94 -3.02 -0.05 -31.99 16 14 N -0.60 -20.95 2.39 -823.91 -1.97 -22.92 16 15 C 0.10 2.70 4.40 86.68 0.38 3.08 16 16 C -0.08 -1.73 5.90 72.26 0.43 -1.31 16 17 S -0.31 -8.46 21.62 -56.49 -1.22 -9.68 16 18 C -0.05 -1.11 5.00 69.78 0.35 -0.76 16 19 C -0.11 -2.90 2.33 -12.68 -0.03 -2.93 16 20 H 0.04 1.37 7.66 -2.39 -0.02 1.35 16 21 C -0.13 -2.71 8.94 71.98 0.64 -2.07 16 22 C 0.12 3.24 4.59 87.10 0.40 3.64 16 23 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 24 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 2.39 4.66 -2.38 -0.01 2.38 16 26 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.09 2.06 7.59 -2.39 -0.02 2.04 16 28 H 0.08 2.63 4.87 -2.38 -0.01 2.62 16 29 H 0.13 2.28 8.14 -2.47 -0.02 2.26 16 30 H 0.11 1.62 7.91 -2.47 -0.02 1.60 16 31 H 0.11 2.15 8.04 -2.39 -0.02 2.13 16 32 H 0.11 1.63 8.11 -2.39 -0.02 1.61 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.11 8.03 -2.39 -0.02 1.09 16 35 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 36 H 0.06 2.00 7.34 -2.39 -0.02 1.99 16 37 H 0.11 2.07 7.52 -2.39 -0.02 2.05 16 Total: -1.00 -71.83 295.85 4.09 -67.74 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.05 Total: 9.21 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 4.01 Total: -8.59 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.73 Total: -74.75 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.22 Total: -9.68 kcal Total: -71.83 4.09 -67.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597566193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.884 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds