Wall clock time and date at job start Mon Mar 30 2020 04:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.50707 * 109.46640 * 119.99870 * 2 1 3 13 13 O 1.21275 * 120.00245 * 119.99864 * 12 2 1 14 14 N 1.34772 * 119.99990 * 299.99819 * 12 2 1 15 15 C 1.46500 * 120.00168 * 180.02562 * 14 12 2 16 16 C 1.53009 * 109.47135 * 179.97438 * 15 14 12 17 17 H 1.08994 * 109.38612 * 55.19461 * 16 15 14 18 18 C 1.52578 * 109.38802 * 174.99648 * 16 15 14 19 19 C 1.52580 * 110.72617 * 190.82205 * 18 16 15 20 20 C 1.53096 * 109.95523 * 289.32733 * 19 18 16 21 21 S 1.81745 * 108.84083 * 63.02440 * 20 19 18 22 22 C 1.53094 * 109.38708 * 295.49148 * 16 15 14 23 23 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 24 24 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 25 25 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 26 26 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 27 27 H 0.97008 * 119.99893 * 359.97438 * 14 12 2 28 28 H 1.09008 * 109.46962 * 299.99304 * 15 14 12 29 29 H 1.08998 * 109.47410 * 59.99720 * 15 14 12 30 30 H 1.09005 * 109.22515 * 311.14235 * 18 16 15 31 31 H 1.09003 * 109.22688 * 70.49773 * 18 16 15 32 32 H 1.08997 * 109.39009 * 49.47588 * 19 18 16 33 33 H 1.08998 * 109.39125 * 169.17460 * 19 18 16 34 34 H 1.09004 * 109.57260 * 182.83313 * 20 19 18 35 35 H 1.09004 * 109.57475 * 303.21469 * 20 19 18 36 36 H 1.08999 * 109.57319 * 296.63253 * 22 16 15 37 37 H 1.08994 * 109.57485 * 57.02047 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 6 2.0322 -0.7104 1.2306 13 8 2.7294 -1.6965 1.1194 14 7 1.7066 -0.2499 2.4546 15 6 2.1953 -0.9402 3.6508 16 6 1.6856 -0.2185 4.9001 17 1 0.5991 -0.1441 4.8569 18 6 2.0905 -1.0076 6.1416 19 6 1.3790 -0.4695 7.3794 20 6 1.9421 0.9053 7.7494 21 16 1.6003 2.0643 6.3918 22 6 2.2876 1.1880 4.9556 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9041 -0.5278 -4.4374 27 1 1.1492 0.5391 2.5435 28 1 1.8321 -1.9680 3.6511 29 1 3.2852 -0.9399 3.6508 30 1 1.8258 -2.0559 6.0027 31 1 3.1682 -0.9261 6.2831 32 1 0.3124 -0.3801 7.1735 33 1 1.5291 -1.1578 8.2110 34 1 1.4652 1.2615 8.6626 35 1 3.0186 0.8297 7.9028 36 1 3.3708 1.1180 5.0545 37 1 2.0366 1.7290 4.0432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597660738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:17 Heat of formation + Delta-G solvation = -55.581017 kcal Electronic energy + Delta-G solvation = -17285.967951 eV Core-core repulsion = 14574.688536 eV Total energy + Delta-G solvation = -2711.279415 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.23200 -37.60733 -34.26904 -33.81272 -31.77470 -30.89784 -27.70753 -26.21646 -25.12592 -23.01396 -21.75739 -20.71120 -19.31056 -17.09643 -16.75472 -16.06537 -15.64820 -15.38723 -15.01261 -14.43239 -14.30954 -13.81216 -13.69545 -13.36326 -13.05290 -12.89204 -12.50902 -12.32094 -12.12282 -11.71034 -11.57787 -11.53025 -11.12816 -10.92845 -10.76992 -10.56929 -10.27831 -9.90942 -9.62980 -9.09262 -8.71170 -8.60106 -8.53861 -7.93005 -6.04257 -4.04482 1.52048 2.27065 3.24147 3.31720 3.37303 3.58425 3.71463 4.30412 4.38627 4.42407 4.51451 4.61028 4.82226 4.95748 5.16975 5.23724 5.25237 5.39034 5.41220 5.49269 5.61553 5.69388 5.73401 5.81226 5.96674 6.08600 6.12328 6.32946 6.45283 6.73036 6.93323 7.16843 7.55405 8.10553 8.56138 9.08535 9.16438 9.54850 11.08769 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.038055 B = 0.004473 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.595602 B = 6258.597748 C = 6717.529649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 H 0.052 0.948 4 C -0.506 4.506 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.267 1.267 11 H -0.296 1.296 12 C 0.528 3.472 13 O -0.531 6.531 14 N -0.749 5.749 15 C 0.128 3.872 16 C -0.099 4.099 17 H 0.090 0.910 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.083 4.083 21 S -0.271 6.271 22 C -0.075 4.075 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.264 0.736 27 H 0.394 0.606 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 4.493 22.617 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.069 0.931 4 C -0.544 4.544 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.223 1.223 12 C 0.316 3.684 13 O -0.405 6.405 14 N -0.404 5.404 15 C 0.002 3.998 16 C -0.120 4.120 17 H 0.108 0.892 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.231 4.231 21 S -0.044 6.044 22 C -0.224 4.224 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.228 0.772 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.968 4.777 22.376 23.072 hybrid contribution -0.277 0.107 -0.219 0.369 sum -3.245 4.884 22.156 22.919 Atomic orbital electron populations 1.22111 0.97334 1.01491 0.99220 1.19313 0.93203 0.97534 0.92653 0.93073 1.20944 1.32080 1.14103 0.87257 0.88910 1.24986 0.95834 0.96570 0.95760 1.69885 1.45489 1.40211 0.97866 0.86909 0.80702 0.83821 0.77071 1.20518 1.19270 1.22315 1.21270 0.78881 0.84291 0.83941 1.90581 1.37161 1.26280 1.86522 1.46281 1.55695 1.32746 1.05687 1.21242 0.99234 0.96076 0.83219 1.21615 1.01775 0.93506 0.95071 0.89205 1.21508 1.00894 1.00404 0.93266 1.21710 1.01074 0.95001 0.98125 1.23463 1.04174 0.96857 0.98597 1.86967 1.80478 1.31989 1.04956 1.23581 1.02860 0.97789 0.98120 0.94859 0.93299 0.92378 0.92573 0.77190 0.91526 0.91859 0.90416 0.91405 0.90478 0.90701 0.87956 0.89906 0.89521 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.57 37.16 0.32 -2.63 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.33 16 3 H 0.05 1.16 7.20 -51.93 -0.37 0.78 16 4 C -0.51 -14.69 8.96 -34.44 -0.31 -14.99 16 5 H 0.09 3.07 7.00 -52.49 -0.37 2.71 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 8 Si 0.88 21.40 24.37 -169.99 -4.14 17.26 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.27 -6.02 6.53 56.52 0.37 -5.65 16 11 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 12 C 0.53 11.41 7.15 -10.98 -0.08 11.33 16 13 O -0.53 -13.68 15.46 5.56 0.09 -13.59 16 14 N -0.75 -11.70 5.14 -60.29 -0.31 -12.01 16 15 C 0.13 1.67 5.04 -4.04 -0.02 1.65 16 16 C -0.10 -0.95 2.08 -90.78 -0.19 -1.13 16 17 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 18 C -0.12 -0.96 4.92 -27.16 -0.13 -1.10 16 19 C -0.12 -0.81 5.75 -26.90 -0.15 -0.97 16 20 C -0.08 -0.60 6.45 37.21 0.24 -0.36 16 21 S -0.27 -2.70 22.33 -107.50 -2.40 -5.11 16 22 C -0.08 -0.74 5.63 37.21 0.21 -0.53 16 23 H 0.03 0.54 7.56 -51.93 -0.39 0.14 16 24 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.39 5.18 7.04 -40.82 -0.29 4.89 16 28 H 0.07 0.92 8.09 -51.92 -0.42 0.50 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 31 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.11 1.10 7.08 -51.93 -0.37 0.73 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -33.25 300.64 -7.65 -40.90 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.77 Total: 2.22 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -0.42 Total: -7.14 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.46 Total: -39.07 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.40 Total: -5.11 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.25 -7.65 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597660738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.681 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds