Wall clock time and date at job start Mon Mar 30 2020 04:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.50707 * 109.46640 * 119.99870 * 2 1 3 13 13 O 1.21275 * 120.00245 * 119.99864 * 12 2 1 14 14 N 1.34772 * 119.99990 * 299.99819 * 12 2 1 15 15 C 1.46500 * 120.00168 * 180.02562 * 14 12 2 16 16 C 1.53009 * 109.47135 * 179.97438 * 15 14 12 17 17 H 1.08994 * 109.38612 * 55.19461 * 16 15 14 18 18 C 1.52578 * 109.38802 * 174.99648 * 16 15 14 19 19 C 1.52580 * 110.72617 * 190.82205 * 18 16 15 20 20 C 1.53096 * 109.95523 * 289.32733 * 19 18 16 21 21 S 1.81745 * 108.84083 * 63.02440 * 20 19 18 22 22 C 1.53094 * 109.38708 * 295.49148 * 16 15 14 23 23 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 24 24 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 25 25 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 26 26 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 27 27 H 0.97008 * 119.99893 * 359.97438 * 14 12 2 28 28 H 1.09008 * 109.46962 * 299.99304 * 15 14 12 29 29 H 1.08998 * 109.47410 * 59.99720 * 15 14 12 30 30 H 1.09005 * 109.22515 * 311.14235 * 18 16 15 31 31 H 1.09003 * 109.22688 * 70.49773 * 18 16 15 32 32 H 1.08997 * 109.39009 * 49.47588 * 19 18 16 33 33 H 1.08998 * 109.39125 * 169.17460 * 19 18 16 34 34 H 1.09004 * 109.57260 * 182.83313 * 20 19 18 35 35 H 1.09004 * 109.57475 * 303.21469 * 20 19 18 36 36 H 1.08999 * 109.57319 * 296.63253 * 22 16 15 37 37 H 1.08994 * 109.57485 * 57.02047 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 6 2.0322 -0.7104 1.2306 13 8 2.7294 -1.6965 1.1194 14 7 1.7066 -0.2499 2.4546 15 6 2.1953 -0.9402 3.6508 16 6 1.6856 -0.2185 4.9001 17 1 0.5991 -0.1441 4.8569 18 6 2.0905 -1.0076 6.1416 19 6 1.3790 -0.4695 7.3794 20 6 1.9421 0.9053 7.7494 21 16 1.6003 2.0643 6.3918 22 6 2.2876 1.1880 4.9556 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9041 -0.5278 -4.4374 27 1 1.1492 0.5391 2.5435 28 1 1.8321 -1.9680 3.6511 29 1 3.2852 -0.9399 3.6508 30 1 1.8258 -2.0559 6.0027 31 1 3.1682 -0.9261 6.2831 32 1 0.3124 -0.3801 7.1735 33 1 1.5291 -1.1578 8.2110 34 1 1.4652 1.2615 8.6626 35 1 3.0186 0.8297 7.9028 36 1 3.3708 1.1180 5.0545 37 1 2.0366 1.7290 4.0432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597660738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:17 Heat of formation + Delta-G solvation = -79.125358 kcal Electronic energy + Delta-G solvation = -17286.988910 eV Core-core repulsion = 14574.688536 eV Total energy + Delta-G solvation = -2712.300374 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77312 -38.58906 -35.79673 -35.44360 -33.44384 -32.24481 -28.44529 -27.33686 -27.05842 -24.49503 -22.72770 -21.66514 -20.78339 -18.81066 -18.10361 -17.43656 -17.07754 -16.48434 -16.25403 -15.95226 -15.41782 -14.93357 -14.84390 -14.51095 -14.35458 -14.05644 -13.94396 -13.58611 -13.43823 -13.09088 -12.78640 -12.54322 -12.34232 -12.23691 -12.13481 -11.80898 -11.47311 -11.44634 -11.21617 -10.77274 -10.61185 -10.45264 -10.00339 -8.68157 -8.26803 -6.34658 0.82566 1.33952 1.40446 1.51612 1.58860 1.86834 2.34029 2.36776 3.07015 3.58200 3.68056 3.83047 3.93771 4.09580 4.19021 4.30328 4.42997 4.44325 4.56013 4.60039 4.61961 4.70610 4.76723 4.83013 4.85487 5.01707 5.07108 5.09627 5.14965 5.34857 5.45442 5.53550 5.56750 6.26647 6.67298 6.85127 7.26927 7.50203 8.91027 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.038055 B = 0.004473 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.595602 B = 6258.597748 C = 6717.529649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.010 4.010 3 H 0.069 0.931 4 C -0.522 4.522 5 H 0.029 0.971 6 C 0.006 3.994 7 N -0.954 5.954 8 Si 0.960 3.040 9 H -0.260 1.260 10 H -0.231 1.231 11 H -0.300 1.300 12 C 0.527 3.473 13 O -0.586 6.586 14 N -0.722 5.722 15 C 0.128 3.872 16 C -0.084 4.084 17 H 0.096 0.904 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.075 4.075 21 S -0.305 6.305 22 C -0.072 4.072 23 H 0.085 0.915 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.267 0.733 27 H 0.411 0.589 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 6.648 25.256 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 H 0.087 0.913 4 C -0.560 4.560 5 H 0.047 0.953 6 C -0.190 4.190 7 N -0.594 5.594 8 Si 0.785 3.215 9 H -0.186 1.186 10 H -0.154 1.154 11 H -0.228 1.228 12 C 0.315 3.685 13 O -0.465 6.465 14 N -0.376 5.376 15 C 0.003 3.997 16 C -0.105 4.105 17 H 0.114 0.886 18 C -0.161 4.161 19 C -0.153 4.153 20 C -0.222 4.222 21 S -0.077 6.077 22 C -0.220 4.220 23 H 0.104 0.896 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.248 0.752 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.939 6.966 25.093 26.506 hybrid contribution 0.422 -0.658 -0.962 1.240 sum -4.517 6.308 24.131 25.348 Atomic orbital electron populations 1.22012 0.94426 1.01648 1.01541 1.19275 0.95452 0.97473 0.91001 0.91341 1.21115 1.31620 1.12837 0.90443 0.95292 1.26043 0.97463 1.00726 0.94806 1.70082 1.47692 1.42858 0.98737 0.85696 0.78779 0.79000 0.78010 1.18604 1.15379 1.22811 1.21027 0.78476 0.83595 0.85384 1.90569 1.39765 1.28692 1.87425 1.45957 1.54397 1.32653 1.04642 1.21394 0.98823 0.96107 0.83402 1.21515 1.01845 0.93204 0.93896 0.88609 1.21523 1.01239 1.00391 0.92911 1.21677 1.00662 0.94940 0.98045 1.23557 1.04820 0.96228 0.97636 1.87099 1.80583 1.33697 1.06362 1.23516 1.02801 0.97609 0.98047 0.89609 0.93660 0.93511 0.92412 0.75166 0.92160 0.92731 0.90022 0.91216 0.90611 0.88706 0.86614 0.89266 0.89616 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 8.57 71.98 0.62 -4.63 16 2 C -0.01 -0.47 2.23 -12.28 -0.03 -0.50 16 3 H 0.07 2.90 7.20 -2.39 -0.02 2.88 16 4 C -0.52 -31.40 8.96 25.60 0.23 -31.17 16 5 H 0.03 2.06 7.00 -2.91 -0.02 2.04 16 6 C 0.01 0.35 5.45 84.65 0.46 0.81 16 7 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 8 Si 0.96 43.26 24.37 68.60 1.67 44.93 16 9 H -0.26 -10.95 6.87 99.48 0.68 -10.27 16 10 H -0.23 -8.97 6.53 99.48 0.65 -8.32 16 11 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 12 C 0.53 22.69 7.15 87.66 0.63 23.32 16 13 O -0.59 -31.40 15.46 -3.01 -0.05 -31.44 16 14 N -0.72 -21.20 5.14 -463.04 -2.38 -23.58 16 15 C 0.13 3.15 5.04 86.38 0.44 3.59 16 16 C -0.08 -1.40 2.08 -10.90 -0.02 -1.42 16 17 H 0.10 1.54 8.06 -2.39 -0.02 1.52 16 18 C -0.12 -1.60 4.92 30.31 0.15 -1.45 16 19 C -0.11 -1.17 5.75 30.49 0.18 -0.99 16 20 C -0.07 -0.86 6.45 72.01 0.46 -0.39 16 21 S -0.30 -5.35 22.33 -56.49 -1.26 -6.61 16 22 C -0.07 -1.24 5.63 72.01 0.41 -0.83 16 23 H 0.09 2.33 7.56 -2.39 -0.02 2.31 16 24 H 0.04 1.75 3.27 -2.39 -0.01 1.74 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 27 H 0.41 9.35 7.04 -92.70 -0.65 8.70 16 28 H 0.06 1.61 8.09 -2.38 -0.02 1.59 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.03 8.05 -2.38 -0.02 1.02 16 31 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.08 0.84 8.06 -2.39 -0.02 0.82 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.86 7.08 -2.39 -0.02 1.84 16 Total: -1.00 -77.48 300.64 2.12 -75.36 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.32 Total: 16.37 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.51 Total: -13.67 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.08 Total: -84.93 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.05 Total: -31.44 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.67 Total: 44.93 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.26 Total: -6.61 kcal Total: -77.48 2.12 -75.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597660738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.767 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds