Wall clock time and date at job start Mon Mar 30 2020 04:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 60.00328 * 8 6 4 10 10 H 1.48495 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47239 * 300.00048 * 8 6 4 12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3 13 13 O 1.21282 * 119.99521 * 240.00257 * 12 2 1 14 14 N 1.34765 * 120.00198 * 59.99825 * 12 2 1 15 15 C 1.46506 * 120.00059 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46899 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.39310 * 304.99896 * 16 15 14 18 18 C 1.52584 * 109.39038 * 185.19458 * 16 15 14 19 19 C 1.52617 * 110.70738 * 169.08000 * 18 16 15 20 20 C 1.53093 * 109.87374 * 70.81823 * 19 18 16 21 21 S 1.81750 * 108.84343 * 296.93991 * 20 19 18 22 22 C 1.53102 * 109.38910 * 64.80273 * 16 15 14 23 23 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 24 24 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 25 25 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 26 26 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00275 * 359.97438 * 14 12 2 28 28 H 1.09000 * 109.46933 * 299.99432 * 15 14 12 29 29 H 1.08997 * 109.47051 * 60.00116 * 15 14 12 30 30 H 1.09002 * 109.22653 * 289.50350 * 18 16 15 31 31 H 1.09010 * 109.22306 * 48.85562 * 18 16 15 32 32 H 1.09006 * 109.46073 * 310.68030 * 19 18 16 33 33 H 1.08993 * 109.40394 * 190.92881 * 19 18 16 34 34 H 1.08999 * 109.57987 * 177.13093 * 20 19 18 35 35 H 1.08996 * 109.57650 * 56.74865 * 20 19 18 36 36 H 1.09000 * 109.57602 * 302.97581 * 22 16 15 37 37 H 1.08997 * 109.57695 * 63.36596 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8259 -2.5203 4.0077 12 6 2.0323 -0.7104 -1.2306 13 8 2.7295 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.1946 -0.9408 -3.6508 16 6 1.6841 -0.2198 -4.9000 17 1 0.5978 -0.1423 -4.8546 18 6 2.0840 -1.0121 -6.1412 19 6 1.3689 -0.4750 -7.3778 20 6 1.9365 0.8966 -7.7527 21 16 1.6037 2.0601 -6.3967 22 6 2.2918 1.1841 -4.9605 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7082 1.1608 3.4845 27 1 1.1487 0.5385 -2.5436 28 1 3.2846 -0.9412 -3.6510 29 1 1.8308 -1.9683 -3.6507 30 1 3.1616 -0.9337 -6.2853 31 1 1.8167 -2.0594 -6.0000 32 1 0.3032 -0.3807 -7.1688 33 1 1.5135 -1.1658 -8.2084 34 1 1.4584 1.2528 -8.6651 35 1 3.0121 0.8163 -7.9092 36 1 2.0458 1.7282 -4.0486 37 1 3.3744 1.1094 -5.0627 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597660739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:19 Heat of formation + Delta-G solvation = -65.402916 kcal Electronic energy + Delta-G solvation = -17219.035933 eV Core-core repulsion = 14507.330609 eV Total energy + Delta-G solvation = -2711.705324 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.07732 -37.50531 -34.17427 -33.70473 -31.60742 -30.22450 -27.63391 -26.03500 -25.10483 -22.80412 -21.67536 -20.63525 -19.23863 -17.05780 -16.27465 -16.00248 -15.49476 -15.29535 -14.82568 -14.36744 -14.20671 -13.70490 -13.62378 -13.24390 -12.83894 -12.74969 -12.34393 -12.10085 -11.65317 -11.52521 -11.41945 -11.04435 -10.98961 -10.75292 -10.68144 -10.62039 -10.23302 -9.94232 -9.84314 -8.96769 -8.60293 -8.44625 -8.30357 -7.86780 -6.01196 -4.04361 1.58196 2.33352 3.37506 3.39892 3.45237 3.74965 3.85786 4.36302 4.46006 4.51592 4.58265 4.67524 4.88594 5.01791 5.22675 5.29841 5.31926 5.44632 5.48050 5.55994 5.67166 5.75407 5.84724 5.91708 6.10711 6.32160 6.63882 6.84537 6.94488 7.07851 7.49459 7.77624 8.00557 8.16413 8.46080 9.04235 9.25429 9.61111 11.06377 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.045514 B = 0.004070 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.042909 B = 6878.259941 C = 7202.301275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.547 6.547 14 N -0.748 5.748 15 C 0.128 3.872 16 C -0.099 4.099 17 H 0.090 0.910 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.083 4.083 21 S -0.271 6.271 22 C -0.075 4.075 23 H 0.093 0.907 24 H 0.012 0.988 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.395 0.605 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 0.869 -19.682 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.540 4.540 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.423 6.423 14 N -0.403 5.403 15 C 0.002 3.998 16 C -0.120 4.120 17 H 0.108 0.892 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.231 4.231 21 S -0.043 6.043 22 C -0.223 4.223 23 H 0.111 0.889 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.229 0.771 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.411 1.287 -19.504 19.550 hybrid contribution 0.643 -1.124 0.770 1.507 sum 0.232 0.163 -18.734 18.736 Atomic orbital electron populations 1.21737 0.96540 0.99788 1.00919 1.18868 0.94151 0.96809 0.89395 0.93058 1.21108 1.30891 1.12947 0.89044 0.90879 1.24951 0.95139 0.95050 0.99092 1.69863 1.37079 1.23081 1.23614 0.86510 0.79271 0.79723 0.81659 1.20204 1.21377 1.20213 1.21978 0.78399 0.84257 0.84486 1.90527 1.38018 1.26931 1.86819 1.46324 1.55590 1.32738 1.05628 1.21215 0.99063 0.96025 0.83498 1.21616 1.01782 0.93519 0.95038 0.89190 1.21520 1.00824 1.00368 0.93355 1.21719 1.01065 0.95030 0.98088 1.23458 1.04123 0.96892 0.98653 1.86974 1.80701 1.31630 1.05032 1.23582 1.02707 0.97833 0.98147 0.88863 0.96931 0.95028 0.92922 0.77069 0.92075 0.91773 0.91454 0.90506 0.90450 0.90764 0.87989 0.89962 0.87300 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.87 37.15 0.33 -2.71 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.47 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.33 8.37 -34.44 -0.29 -14.62 16 5 H 0.07 2.20 6.75 -52.48 -0.35 1.85 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.78 7.15 -10.99 -0.08 11.70 16 13 O -0.55 -14.30 15.46 5.56 0.09 -14.21 16 14 N -0.75 -12.62 5.14 -60.29 -0.31 -12.93 16 15 C 0.13 1.78 5.04 -4.04 -0.02 1.76 16 16 C -0.10 -1.03 2.08 -90.78 -0.19 -1.22 16 17 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 18 C -0.12 -1.04 4.92 -27.14 -0.13 -1.17 16 19 C -0.12 -0.88 5.76 -26.88 -0.15 -1.03 16 20 C -0.08 -0.65 6.45 37.21 0.24 -0.41 16 21 S -0.27 -2.88 22.33 -107.50 -2.40 -5.28 16 22 C -0.07 -0.79 5.63 37.21 0.21 -0.58 16 23 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 24 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.40 5.85 7.06 -40.82 -0.29 5.56 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.08 0.63 8.05 -51.92 -0.42 0.21 16 32 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.11 1.23 7.10 -51.93 -0.37 0.86 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 307.48 15.07 4.63 4.63 Total: -1.00 -31.12 307.48 -8.72 -39.84 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.91 Total: 1.97 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.42 Total: -6.27 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.32 Total: -37.61 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.09 Total: -14.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.40 Total: -5.28 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.12 -8.72 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597660739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.567 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds