Wall clock time and date at job start Mon Mar 30 2020 04:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47093 * 60.00328 * 8 6 4 10 10 H 1.48495 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47239 * 300.00048 * 8 6 4 12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3 13 13 O 1.21282 * 119.99521 * 240.00257 * 12 2 1 14 14 N 1.34765 * 120.00198 * 59.99825 * 12 2 1 15 15 C 1.46506 * 120.00059 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46899 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.39310 * 304.99896 * 16 15 14 18 18 C 1.52584 * 109.39038 * 185.19458 * 16 15 14 19 19 C 1.52617 * 110.70738 * 169.08000 * 18 16 15 20 20 C 1.53093 * 109.87374 * 70.81823 * 19 18 16 21 21 S 1.81750 * 108.84343 * 296.93991 * 20 19 18 22 22 C 1.53102 * 109.38910 * 64.80273 * 16 15 14 23 23 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 24 24 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 25 25 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 26 26 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00275 * 359.97438 * 14 12 2 28 28 H 1.09000 * 109.46933 * 299.99432 * 15 14 12 29 29 H 1.08997 * 109.47051 * 60.00116 * 15 14 12 30 30 H 1.09002 * 109.22653 * 289.50350 * 18 16 15 31 31 H 1.09010 * 109.22306 * 48.85562 * 18 16 15 32 32 H 1.09006 * 109.46073 * 310.68030 * 19 18 16 33 33 H 1.08993 * 109.40394 * 190.92881 * 19 18 16 34 34 H 1.08999 * 109.57987 * 177.13093 * 20 19 18 35 35 H 1.08996 * 109.57650 * 56.74865 * 20 19 18 36 36 H 1.09000 * 109.57602 * 302.97581 * 22 16 15 37 37 H 1.08997 * 109.57695 * 63.36596 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8259 -2.5203 4.0077 12 6 2.0323 -0.7104 -1.2306 13 8 2.7295 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.1946 -0.9408 -3.6508 16 6 1.6841 -0.2198 -4.9000 17 1 0.5978 -0.1423 -4.8546 18 6 2.0840 -1.0121 -6.1412 19 6 1.3689 -0.4750 -7.3778 20 6 1.9365 0.8966 -7.7527 21 16 1.6037 2.0601 -6.3967 22 6 2.2918 1.1841 -4.9605 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7082 1.1608 3.4845 27 1 1.1487 0.5385 -2.5436 28 1 3.2846 -0.9412 -3.6510 29 1 1.8308 -1.9683 -3.6507 30 1 3.1616 -0.9337 -6.2853 31 1 1.8167 -2.0594 -6.0000 32 1 0.3032 -0.3807 -7.1688 33 1 1.5135 -1.1658 -8.2084 34 1 1.4584 1.2528 -8.6651 35 1 3.0121 0.8163 -7.9092 36 1 2.0458 1.7282 -4.0486 37 1 3.3744 1.1094 -5.0627 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597660739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:18 Heat of formation + Delta-G solvation = -84.485663 kcal Electronic energy + Delta-G solvation = -17219.863423 eV Core-core repulsion = 14507.330609 eV Total energy + Delta-G solvation = -2712.532814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67919 -38.56572 -35.77396 -35.39800 -32.96792 -31.91278 -28.43289 -27.31278 -27.03854 -24.33078 -22.73961 -21.64619 -20.79364 -18.41228 -18.03118 -17.45185 -16.86754 -16.50071 -16.22688 -15.90633 -15.38252 -14.79803 -14.64011 -14.46383 -14.35231 -13.95336 -13.58489 -13.46594 -13.05329 -12.96508 -12.70335 -12.59413 -12.34263 -12.26098 -12.17628 -12.00866 -11.81552 -11.44947 -11.04607 -10.61351 -10.60102 -10.29825 -9.96402 -8.69097 -8.14646 -6.25248 0.81760 1.41460 1.42908 1.51485 1.58745 1.93667 2.35140 2.53697 3.14893 3.57864 3.67726 3.83599 3.93894 4.13534 4.28652 4.36794 4.43876 4.55686 4.62073 4.74031 4.76043 4.79094 4.84660 4.95208 5.01860 5.06083 5.09369 5.14489 5.34752 5.50000 5.59664 5.75287 5.94538 6.21941 6.72781 6.86046 7.40219 7.54529 8.90937 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.045514 B = 0.004070 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.042909 B = 6878.259941 C = 7202.301275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.022 3.978 3 H 0.040 0.960 4 C -0.531 4.531 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.588 6.588 14 N -0.726 5.726 15 C 0.129 3.871 16 C -0.085 4.085 17 H 0.092 0.908 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.073 4.073 21 S -0.307 6.307 22 C -0.070 4.070 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.023 0.977 26 H 0.265 0.735 27 H 0.408 0.592 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 0.762 -21.252 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.001 3.999 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.468 6.468 14 N -0.379 5.379 15 C 0.003 3.997 16 C -0.105 4.105 17 H 0.110 0.890 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.221 4.221 21 S -0.080 6.080 22 C -0.218 4.218 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.244 0.756 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.770 1.218 -21.117 21.166 hybrid contribution 0.748 -1.055 1.174 1.747 sum -0.022 0.162 -19.943 19.944 Atomic orbital electron populations 1.21549 0.95061 0.99405 1.01677 1.18814 0.95351 0.95920 0.89801 0.94191 1.21272 1.31540 1.12917 0.91178 0.93326 1.25604 0.95202 0.95724 1.01437 1.69944 1.37164 1.23568 1.24358 0.85655 0.78666 0.78749 0.78830 1.20171 1.19943 1.20134 1.21505 0.78188 0.83661 0.85649 1.90504 1.40000 1.28676 1.87591 1.46041 1.54354 1.32585 1.04945 1.21389 0.98796 0.96047 0.83444 1.21519 1.01627 0.93259 0.94133 0.88996 1.21530 1.01302 1.00339 0.92777 1.21690 1.00559 0.95016 0.98080 1.23562 1.04905 0.96149 0.97517 1.87122 1.80858 1.33499 1.06531 1.23498 1.02773 0.97670 0.97904 0.91155 0.93024 0.95827 0.92602 0.75592 0.92622 0.92148 0.91032 0.89943 0.90748 0.88499 0.86546 0.89127 0.88320 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.87 71.98 0.64 -4.80 16 2 C 0.02 1.13 2.64 -12.29 -0.03 1.10 16 3 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.53 -31.00 8.37 25.60 0.21 -30.78 16 5 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 6 C 0.02 1.10 5.30 84.66 0.45 1.55 16 7 N -0.91 -51.50 11.32 21.45 0.24 -51.26 16 8 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 C 0.52 23.81 7.15 87.66 0.63 24.44 16 13 O -0.59 -31.35 15.46 -3.03 -0.05 -31.40 16 14 N -0.73 -23.93 5.14 -463.06 -2.38 -26.31 16 15 C 0.13 3.43 5.04 86.38 0.44 3.87 16 16 C -0.09 -1.60 2.08 -10.90 -0.02 -1.63 16 17 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 18 C -0.12 -1.74 4.92 30.33 0.15 -1.59 16 19 C -0.11 -1.31 5.76 30.50 0.18 -1.13 16 20 C -0.07 -0.94 6.45 72.01 0.46 -0.47 16 21 S -0.31 -6.03 22.33 -56.49 -1.26 -7.30 16 22 C -0.07 -1.39 5.63 72.02 0.41 -0.99 16 23 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 24 H 0.05 1.90 7.56 -2.38 -0.02 1.88 16 25 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.41 11.50 7.06 -92.71 -0.65 10.85 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.71 8.09 -2.39 -0.02 1.69 16 30 H 0.07 0.99 8.08 -2.39 -0.02 0.98 16 31 H 0.08 1.13 8.05 -2.38 -0.02 1.11 16 32 H 0.07 0.94 8.05 -2.38 -0.02 0.92 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.10 2.13 7.10 -2.39 -0.02 2.12 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -67.52 307.48 2.48 -65.04 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.39 Total: 14.46 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 3.50 Total: -10.44 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -2.14 Total: -77.57 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.05 Total: -31.40 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -6.03 SS G_CDS: -1.26 Total: -7.30 kcal Total: -67.52 2.48 -65.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597660739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.443 kcal (2) G-P(sol) polarization free energy of solvation -67.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds