Wall clock time and date at job start Mon Mar 30 2020 04:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00147 * 2 1 4 4 H 1.48499 * 109.47455 * 270.00270 * 3 2 1 5 5 H 1.48498 * 109.46977 * 30.00429 * 3 2 1 6 6 H 1.48503 * 109.47229 * 150.00331 * 3 2 1 7 7 C 1.37879 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46937 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47203 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47255 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99879 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00193 * 179.97438 * 13 12 11 16 16 C 1.47580 * 134.49629 * 180.02562 * 15 13 12 17 17 C 1.53946 * 86.24073 * 155.42618 * 16 15 13 18 18 O 1.42901 * 113.74303 * 269.20417 * 17 16 15 19 19 C 1.53005 * 113.73974 * 137.89466 * 17 16 15 20 20 O 1.42901 * 109.46915 * 185.00092 * 19 17 16 21 21 C 1.47812 * 134.57995 * 359.95741 * 15 13 12 22 22 H 0.96998 * 119.99942 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47041 * 60.00708 * 9 7 2 24 24 H 1.09000 * 109.47579 * 300.00321 * 9 7 2 25 25 H 1.08997 * 109.47049 * 60.00225 * 10 9 7 26 26 H 1.09000 * 109.46619 * 299.99783 * 10 9 7 27 27 H 1.09006 * 109.47414 * 59.99999 * 11 10 9 28 28 H 1.09000 * 109.47389 * 299.99685 * 11 10 9 29 29 H 1.08997 * 109.46718 * 60.00000 * 12 11 10 30 30 H 1.09000 * 109.46889 * 300.00234 * 12 11 10 31 31 H 1.09002 * 113.76914 * 41.06930 * 16 15 13 32 32 H 1.09000 * 113.77064 * 269.78402 * 16 15 13 33 33 H 0.96698 * 113.99808 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.47247 * 305.00304 * 19 17 16 35 35 H 1.09005 * 109.46828 * 65.00115 * 19 17 16 36 36 H 0.96703 * 113.99875 * 180.02562 * 20 19 17 37 37 H 1.08996 * 113.67199 * 90.26545 * 21 15 13 38 38 H 1.08996 * 113.93703 * 318.91196 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0018 13 6 1.7209 -7.4551 -0.0018 14 8 0.5081 -7.4551 -0.0018 15 7 2.3947 -8.6223 -0.0029 16 6 2.0002 -10.0444 -0.0037 17 6 3.3731 -10.3202 -0.6432 18 8 3.3578 -10.2948 -2.0719 19 6 4.0815 -11.5512 -0.0742 20 8 5.3878 -11.6550 -0.6443 21 6 3.8252 -8.9945 -0.0049 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8894 26 1 2.8718 -3.6043 -0.8906 27 1 0.8538 -5.0446 -0.8914 28 1 0.8533 -5.0451 0.8886 29 1 3.1011 -6.0927 0.8882 30 1 3.1011 -6.0918 -0.8918 31 1 1.1578 -10.2663 -0.6589 32 1 1.8867 -10.4695 0.9936 33 1 4.2185 -10.4673 -2.4775 34 1 4.1642 -11.4549 1.0083 35 1 3.5072 -12.4454 -0.3167 36 1 5.8956 -12.4150 -0.3285 37 1 4.2490 -9.1092 0.9927 38 1 4.4414 -8.3791 -0.6605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597703435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:03 Heat of formation + Delta-G solvation = -117.009055 kcal Electronic energy + Delta-G solvation = -18718.433053 eV Core-core repulsion = 15561.737047 eV Total energy + Delta-G solvation = -3156.696006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83394 -38.62261 -36.85197 -35.38159 -34.81735 -32.58661 -30.66541 -29.37774 -26.78764 -26.57310 -24.97485 -22.15974 -20.86370 -19.94789 -19.12969 -18.12577 -17.36616 -16.87893 -16.14869 -16.07436 -15.79053 -15.29763 -14.85759 -14.40488 -14.22922 -13.67159 -13.31516 -13.21438 -13.03148 -12.56435 -12.21644 -12.08603 -11.67559 -11.54875 -11.28119 -10.95247 -10.78256 -10.50307 -10.47980 -10.44092 -10.36559 -9.70037 -9.56946 -9.18263 -8.95084 -8.85746 -8.27395 -5.92104 -3.94547 2.60529 2.73824 3.34199 3.36299 3.42056 3.45400 3.53745 3.90108 4.34447 4.51095 4.54203 4.68381 4.87201 4.94508 5.06078 5.15041 5.32876 5.37321 5.37599 5.43098 5.49651 5.64960 5.93648 6.18768 6.35842 6.59245 6.88615 6.91943 7.06095 7.24293 7.24350 7.56724 7.77787 7.94221 8.09667 8.23686 8.51449 9.13226 9.68882 11.19320 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.045965 B = 0.002983 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.008034 B = 9383.800534 C = 9754.223255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.131 4.131 13 C 0.539 3.461 14 O -0.533 6.533 15 N -0.646 5.646 16 C 0.119 3.881 17 C 0.100 3.900 18 O -0.529 6.529 19 C 0.058 3.942 20 O -0.573 6.573 21 C 0.082 3.918 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.389 0.611 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.387 0.613 37 H 0.093 0.907 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.846 -26.901 1.007 29.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.170 4.170 13 C 0.330 3.670 14 O -0.408 6.408 15 N -0.384 5.384 16 C -0.004 4.004 17 C 0.057 3.943 18 O -0.336 6.336 19 C -0.021 4.021 20 O -0.379 6.379 21 C -0.042 4.042 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.238 0.762 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.235 0.765 37 H 0.111 0.889 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.078 -25.878 0.796 27.782 hybrid contribution 1.271 0.259 0.291 1.329 sum 11.348 -25.619 1.087 28.041 Atomic orbital electron populations 1.69975 1.06058 1.26486 1.50986 1.25045 0.94839 0.99226 0.95490 0.86607 0.79813 0.83596 0.78042 1.20709 1.21266 1.19925 1.21289 0.92984 0.91209 1.50334 0.92755 1.19099 0.94063 0.91242 0.97335 1.21646 0.99076 0.93942 1.00061 1.21476 0.97034 0.92671 1.02999 1.21735 1.00023 0.91419 1.03854 1.20812 0.87737 0.83938 0.74465 1.90715 1.14012 1.86739 1.49373 1.49912 1.08276 1.04932 1.75231 1.23109 0.96287 0.80786 1.00199 1.22752 0.96058 0.92437 0.83004 1.86513 1.36998 1.94014 1.16030 1.22728 0.84167 0.97878 0.97328 1.86373 1.27671 1.53066 1.70810 1.23915 0.84300 0.94651 1.01322 0.93053 0.96557 0.96579 0.93490 0.93464 0.91737 0.91791 0.89316 0.89216 0.88914 0.88470 0.76181 0.91818 0.92107 0.76461 0.88920 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.29 55.43 0.74 -27.28 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.36 5.15 -26.73 -0.14 -2.50 16 11 C -0.10 -1.99 4.50 -26.73 -0.12 -2.11 16 12 C -0.13 -1.97 5.46 -27.88 -0.15 -2.12 16 13 C 0.54 8.72 8.06 -10.99 -0.09 8.63 16 14 O -0.53 -10.84 16.71 5.55 0.09 -10.74 16 15 N -0.65 -7.94 3.62 -177.28 -0.64 -8.58 16 16 C 0.12 1.12 8.23 -2.97 -0.02 1.10 16 17 C 0.10 0.77 1.67 -89.69 -0.15 0.62 16 18 O -0.53 -5.03 13.51 -44.39 -0.60 -5.63 16 19 C 0.06 0.26 6.65 37.16 0.25 0.50 16 20 O -0.57 -2.52 13.00 -44.39 -0.58 -3.10 16 21 C 0.08 0.68 8.02 -2.86 -0.02 0.66 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 28 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.39 2.53 8.42 45.56 0.38 2.91 16 34 H 0.06 0.18 8.04 -51.93 -0.42 -0.24 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.39 0.08 9.12 45.56 0.42 0.49 16 37 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -37.60 325.51 -6.75 -44.35 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.64 Total: -2.23 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.00 Total: -8.91 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.09 Total: -35.86 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -1.08 Total: -19.48 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.60 -6.75 -44.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597703435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.659 kcal (2) G-P(sol) polarization free energy of solvation -37.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds