Wall clock time and date at job start Mon Mar 30 2020 04:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81394 * 103.00102 * 2 1 4 4 C 1.52998 * 109.47384 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47291 * 60.00062 * 4 3 2 6 6 C 1.53007 * 109.47073 * 300.00220 * 4 3 2 7 7 C 1.50700 * 109.47342 * 180.02562 * 4 3 2 8 8 O 1.21279 * 119.99717 * 355.76099 * 7 4 3 9 9 N 1.34776 * 119.99886 * 175.77038 * 7 4 3 10 10 C 1.47581 * 134.48834 * 174.90594 * 9 7 4 11 11 C 1.53951 * 86.11419 * 204.63204 * 10 9 7 12 12 C 1.50700 * 113.74119 * 221.93989 * 11 10 9 13 13 H 1.08001 * 119.99967 * 358.07565 * 12 11 10 14 14 C 1.37879 * 119.99668 * 178.07471 * 12 11 10 15 15 N 1.31510 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99557 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47240 * 60.00177 * 16 14 12 18 18 H 1.48500 * 109.46796 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47005 * 299.99781 * 16 14 12 20 20 C 1.47924 * 134.50652 * 354.89669 * 9 7 4 21 21 H 1.08994 * 109.47487 * 60.00131 * 1 2 3 22 22 H 1.09002 * 109.46804 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47010 * 299.99545 * 1 2 3 24 24 H 1.09000 * 109.46912 * 60.00184 * 3 2 1 25 25 H 1.09003 * 109.47310 * 300.00650 * 3 2 1 26 26 H 1.08994 * 109.47453 * 178.95242 * 5 4 3 27 27 H 1.09007 * 109.46988 * 298.95376 * 5 4 3 28 28 H 1.09004 * 109.47193 * 58.94525 * 5 4 3 29 29 H 1.09000 * 109.47113 * 299.99881 * 6 4 3 30 30 H 1.08996 * 109.46879 * 59.99665 * 6 4 3 31 31 H 1.08995 * 109.47028 * 180.02562 * 6 4 3 32 32 H 1.09003 * 113.77110 * 90.33357 * 10 9 7 33 33 H 1.08996 * 113.76886 * 318.92928 * 10 9 7 34 34 H 1.08997 * 113.74112 * 90.73806 * 11 10 9 35 35 H 0.97001 * 119.99419 * 179.97438 * 15 14 12 36 36 H 1.09006 * 113.86489 * 41.09968 * 20 9 7 37 37 H 1.09003 * 113.77014 * 269.61823 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.3299 1.2809 -1.2502 6 6 4.3309 1.2806 1.2483 7 6 4.0813 3.4083 0.0000 8 8 3.1971 4.2348 -0.0768 9 7 5.3671 3.8030 0.0857 10 6 6.0553 5.1069 0.0202 11 6 7.2964 4.3115 -0.4238 12 6 8.5779 4.7795 0.2163 13 1 8.5679 5.6226 0.8912 14 6 9.7631 4.1312 -0.0596 15 7 9.7753 3.1049 -0.8818 16 14 11.3515 4.7109 0.7344 17 1 11.2285 4.6202 2.2115 18 1 12.4749 3.8540 0.2772 19 1 11.6141 6.1197 0.3451 20 6 6.6555 3.1036 0.2832 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8032 2.2370 0.8900 25 1 1.8031 2.2371 -0.8899 26 1 5.4109 1.4199 -1.2601 27 1 4.1006 0.2153 -1.2409 28 1 3.8965 1.7379 -2.1399 29 1 3.9124 1.7500 2.1385 30 1 4.0857 0.2185 1.2483 31 1 5.4139 1.4038 1.2481 32 1 6.1686 5.5930 0.9892 33 1 5.6624 5.7729 -0.7480 34 1 7.3792 4.1944 -1.5043 35 1 10.6092 2.6491 -1.0762 36 1 6.7414 2.1713 -0.2751 37 1 6.9447 3.0024 1.3293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598025611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:59 Heat of formation + Delta-G solvation = -16.993801 kcal Electronic energy + Delta-G solvation = -17588.187087 eV Core-core repulsion = 14878.580939 eV Total energy + Delta-G solvation = -2709.606148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.87100 -37.30542 -35.31429 -32.67581 -29.37713 -29.03535 -27.17700 -27.12701 -25.25817 -25.11649 -22.19950 -19.64803 -17.98430 -16.78296 -16.25965 -15.84320 -15.66052 -14.96706 -14.62977 -14.27702 -13.89391 -13.63781 -13.48196 -13.07990 -12.92538 -12.30053 -12.06524 -11.99729 -11.91550 -11.79725 -11.39696 -11.24065 -11.15822 -10.92436 -10.84743 -10.72353 -10.36984 -9.98433 -9.54334 -9.27304 -8.88334 -8.58360 -7.87369 -7.67289 -6.19590 -4.25180 1.60083 2.53704 3.14473 3.24462 3.30136 3.32172 3.59849 4.32300 4.66944 4.87879 4.91466 5.00481 5.01809 5.11514 5.29639 5.55426 5.56031 5.68953 5.84417 5.91773 5.97048 6.06984 6.12707 6.21528 6.22804 6.32511 6.38640 6.41233 6.56533 6.71896 6.82695 7.53037 7.77841 8.14897 8.48461 8.72907 8.77687 9.41739 10.89990 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.042344 B = 0.004641 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.098606 B = 6031.757190 C = 6374.401929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.254 6.254 3 C -0.056 4.056 4 C -0.059 4.059 5 C -0.143 4.143 6 C -0.146 4.146 7 C 0.538 3.462 8 O -0.570 6.570 9 N -0.634 5.634 10 C 0.103 3.897 11 C 0.034 3.966 12 C -0.521 4.521 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.886 5.886 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.104 3.896 21 H 0.074 0.926 22 H 0.098 0.902 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.265 0.735 36 H 0.068 0.932 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 -6.353 1.741 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.028 6.028 3 C -0.205 4.205 4 C -0.063 4.063 5 C -0.201 4.201 6 C -0.204 4.204 7 C 0.326 3.674 8 O -0.451 6.451 9 N -0.367 5.367 10 C -0.019 4.019 11 C 0.015 3.985 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.017 4.017 21 H 0.094 0.906 22 H 0.117 0.883 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.627 -7.009 1.598 13.670 hybrid contribution -0.040 1.248 0.471 1.335 sum -11.666 -5.761 2.069 13.175 Atomic orbital electron populations 1.23397 0.95223 1.06117 1.04833 1.86696 1.06321 1.11826 1.98005 1.23282 0.98142 0.93115 1.05925 1.20422 0.93271 0.93521 0.99069 1.21949 1.02104 1.00891 0.95153 1.22007 1.02086 1.01047 0.95259 1.19981 0.81449 0.89691 0.76322 1.90614 1.46649 1.54893 1.52936 1.50456 1.04669 1.12588 1.69006 1.23501 0.91382 0.86765 1.00256 1.20500 0.90950 0.89682 0.97411 1.20935 0.91332 1.15819 1.27854 0.91953 1.25004 0.99094 0.94739 0.94611 1.69931 1.27534 1.20408 1.34404 0.86611 0.82567 0.78821 0.79771 1.20087 1.21214 1.20096 1.23846 0.77713 0.99446 1.00742 0.90649 0.88305 0.90684 0.89738 0.89479 0.90760 0.90820 0.92302 0.92440 0.90789 0.90798 0.90854 0.92144 0.91840 0.92566 0.91331 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 10.76 101.05 1.09 -0.06 16 2 S -0.25 -3.11 19.45 -107.50 -2.09 -5.20 16 3 C -0.06 -0.80 4.24 37.16 0.16 -0.64 16 4 C -0.06 -0.92 0.56 -155.66 -0.09 -1.01 16 5 C -0.14 -2.15 8.13 37.16 0.30 -1.84 16 6 C -0.15 -2.12 8.06 37.16 0.30 -1.82 16 7 C 0.54 10.48 6.71 -10.99 -0.07 10.40 16 8 O -0.57 -12.63 16.72 5.56 0.09 -12.54 16 9 N -0.63 -12.71 3.54 -178.13 -0.63 -13.34 16 10 C 0.10 2.13 8.39 -2.96 -0.02 2.10 16 11 C 0.03 0.77 3.60 -90.85 -0.33 0.45 16 12 C -0.52 -13.06 8.77 -34.44 -0.30 -13.36 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -23.58 13.29 55.43 0.74 -22.84 16 16 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.10 2.13 5.74 -2.78 -0.02 2.12 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 23 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 25 H 0.09 1.28 8.05 -51.92 -0.42 0.86 16 26 H 0.07 1.20 5.75 -51.93 -0.30 0.90 16 27 H 0.07 1.00 6.96 -51.93 -0.36 0.64 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.98 6.91 -51.93 -0.36 0.62 16 31 H 0.07 1.12 5.56 -51.93 -0.29 0.83 16 32 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.07 1.38 5.96 -51.93 -0.31 1.07 16 37 H 0.08 1.55 8.01 -51.93 -0.42 1.13 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -27.59 310.82 -7.11 -34.70 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.80 Total: 1.73 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 0.92 Total: -2.00 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.11 Total: -36.18 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.09 Total: -5.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.59 -7.11 -34.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.705 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds