Wall clock time and date at job start Mon Mar 30 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81403 * 102.99948 * 2 1 4 4 H 1.08990 * 109.47379 * 55.00040 * 3 2 1 5 5 C 1.53002 * 109.46943 * 294.99707 * 3 2 1 6 6 C 1.53000 * 109.47108 * 175.00248 * 3 2 1 7 7 C 1.52997 * 109.47060 * 294.99560 * 6 3 2 8 8 C 1.50697 * 109.47466 * 180.02562 * 7 6 3 9 9 O 1.21288 * 120.00038 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.47067 * 136.05325 * 359.62619 * 10 8 7 12 12 C 1.53759 * 87.88476 * 152.96584 * 11 10 8 13 13 C 1.50699 * 114.26861 * 139.79432 * 12 11 10 14 14 H 1.08000 * 119.99786 * 266.47711 * 13 12 11 15 15 C 1.37872 * 120.00316 * 86.47621 * 13 12 11 16 16 N 1.31513 * 119.99904 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00221 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47161 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47090 * 119.99778 * 17 15 13 20 20 H 1.48502 * 109.47191 * 239.99793 * 17 15 13 21 21 C 1.47060 * 136.06113 * 180.02562 * 10 8 7 22 22 H 1.09004 * 109.46788 * 300.00099 * 1 2 3 23 23 H 1.08999 * 109.47168 * 60.00344 * 1 2 3 24 24 H 1.08999 * 109.46909 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47312 * 300.00375 * 5 3 2 26 26 H 1.09004 * 109.46964 * 60.00173 * 5 3 2 27 27 H 1.08994 * 109.47359 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47398 * 54.99729 * 6 3 2 29 29 H 1.09001 * 109.47194 * 174.99909 * 6 3 2 30 30 H 1.09002 * 109.47153 * 300.00319 * 7 6 3 31 31 H 1.08998 * 109.47533 * 59.99948 * 7 6 3 32 32 H 1.08992 * 113.47187 * 267.69611 * 11 10 8 33 33 H 1.09004 * 113.46730 * 38.14593 * 11 10 8 34 34 H 1.09000 * 114.39586 * 272.67483 * 12 11 10 35 35 H 0.97002 * 120.00175 * 180.02562 * 16 15 13 36 36 H 1.09006 * 113.46835 * 321.86259 * 21 10 8 37 37 H 1.08999 * 113.47321 * 92.24361 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 0.8417 5 6 1.7428 2.4016 -1.3074 6 6 3.7370 1.9412 0.1257 7 6 4.1989 1.4193 1.4877 8 6 5.6909 1.5909 1.6118 9 8 6.3226 2.0827 0.7007 10 7 6.3234 1.1978 2.7351 11 6 5.9291 0.5890 4.0145 12 6 7.3424 -0.0106 4.0995 13 6 7.9466 0.0209 5.4797 14 1 8.5775 0.8465 5.7743 15 6 7.6939 -1.0041 6.3665 16 7 6.9251 -2.0092 6.0080 17 14 8.4422 -0.9647 8.0776 18 1 9.2611 0.2644 8.2315 19 1 7.3579 -0.9680 9.0922 20 1 9.3029 -2.1597 8.2691 21 6 7.7104 1.1954 3.2239 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 2.2354 1.9149 -2.1492 26 1 0.6635 2.2778 -1.3970 27 1 1.9875 3.4637 -1.3073 28 1 4.2339 1.3804 -0.6660 29 1 3.9902 2.9977 0.0365 30 1 3.7019 1.9801 2.2793 31 1 3.9457 0.3629 1.5769 32 1 5.7195 1.3189 4.7963 33 1 5.1435 -0.1602 3.9149 34 1 7.4532 -0.9744 3.6027 35 1 6.7470 -2.7302 6.6319 36 1 8.4427 0.9631 2.4506 37 1 7.9704 2.0856 3.7966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598029679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:29 Heat of formation + Delta-G solvation = -21.390285 kcal Electronic energy + Delta-G solvation = -16826.967330 eV Core-core repulsion = 14117.170536 eV Total energy + Delta-G solvation = -2709.796794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45645 -37.30671 -35.36351 -32.67837 -31.02488 -29.23535 -28.59026 -25.60563 -24.92661 -23.89976 -21.54164 -20.20856 -18.03784 -16.93284 -16.61161 -16.18530 -15.35913 -15.12166 -14.72009 -14.49903 -14.29926 -13.85841 -13.58691 -13.04250 -12.92213 -12.56325 -12.34463 -12.04165 -11.74829 -11.52038 -11.36281 -11.26068 -11.16785 -10.94132 -10.93205 -10.77035 -10.33281 -9.84115 -9.57017 -9.18644 -8.93843 -8.57444 -7.83043 -7.74466 -6.17055 -4.22720 1.57386 2.47029 3.23216 3.23859 3.32424 3.35837 3.61829 4.34117 4.58199 4.66484 4.93777 4.96715 5.01150 5.12529 5.21642 5.31994 5.41316 5.46728 5.56623 5.62188 5.81124 5.89800 6.08277 6.11289 6.21107 6.27356 6.32039 6.47465 6.59783 6.70990 6.84524 7.57588 7.80899 8.19862 8.58105 8.80681 8.82093 9.44163 10.92695 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.004143 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.697282 B = 6755.980411 C = 7486.560211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.254 6.254 3 C -0.057 4.057 4 H 0.087 0.913 5 C -0.146 4.146 6 C -0.082 4.082 7 C -0.136 4.136 8 C 0.531 3.469 9 O -0.570 6.570 10 N -0.644 5.644 11 C 0.098 3.902 12 C 0.034 3.966 13 C -0.517 4.517 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.885 5.885 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.098 3.902 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.263 0.737 36 H 0.056 0.944 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.588 5.687 -9.057 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.028 6.028 3 C -0.186 4.186 4 H 0.105 0.895 5 C -0.205 4.205 6 C -0.120 4.120 7 C -0.176 4.176 8 C 0.321 3.679 9 O -0.451 6.451 10 N -0.377 5.377 11 C -0.025 4.025 12 C 0.015 3.985 13 C -0.555 4.555 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.522 5.522 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.024 4.024 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.785 4.956 -9.647 16.016 hybrid contribution -0.715 0.950 1.101 1.620 sum -12.499 5.906 -8.546 16.253 Atomic orbital electron populations 1.23397 0.95103 1.06296 1.04606 1.87160 1.06392 1.11450 1.97822 1.23254 1.00449 0.93615 1.01250 0.89465 1.22069 1.00890 1.01112 0.96466 1.21172 0.90613 1.02812 0.97441 1.21636 0.92914 1.04401 0.98610 1.20131 0.89285 0.77206 0.81249 1.90623 1.68432 1.46474 1.39600 1.50033 1.12389 1.60116 1.15191 1.23650 1.02508 0.95147 0.81179 1.20399 0.90248 0.92869 0.94985 1.20954 1.30836 1.07066 0.96670 0.91815 1.25029 0.94680 0.94964 0.98845 1.69965 1.36506 1.09904 1.35810 0.86491 0.79105 0.78197 0.83968 1.19573 1.20902 1.20866 1.23329 0.82769 1.00593 0.95684 0.90649 0.90727 0.88266 0.91206 0.92693 0.91563 0.90242 0.89902 0.89440 0.88148 0.90871 0.92069 0.91333 0.92683 0.92567 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 10.45 101.05 1.06 0.01 16 2 S -0.25 -3.02 20.60 -107.50 -2.21 -5.24 16 3 C -0.06 -0.61 2.82 -26.73 -0.08 -0.68 16 4 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 5 C -0.15 -1.28 9.10 37.16 0.34 -0.95 16 6 C -0.08 -1.08 3.97 -26.73 -0.11 -1.19 16 7 C -0.14 -2.08 5.35 -27.89 -0.15 -2.23 16 8 C 0.53 10.55 8.08 -10.99 -0.09 10.46 16 9 O -0.57 -12.84 16.76 5.55 0.09 -12.75 16 10 N -0.64 -13.42 3.69 -185.07 -0.68 -14.10 16 11 C 0.10 2.08 8.00 -8.38 -0.07 2.01 16 12 C 0.03 0.81 3.79 -91.11 -0.35 0.47 16 13 C -0.52 -13.24 8.83 -34.44 -0.30 -13.55 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -24.19 13.26 55.43 0.74 -23.46 16 17 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.10 2.11 8.17 -8.51 -0.07 2.04 16 22 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.07 0.53 7.14 -51.92 -0.37 0.16 16 24 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.41 6.92 -51.93 -0.36 0.06 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 1.58 7.13 -51.93 -0.37 1.21 16 32 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.78 8.11 -51.93 -0.42 1.36 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -29.05 322.16 -8.27 -37.33 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.13 Total: 0.22 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 0.09 Total: -1.92 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.05 Total: -37.56 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.21 Total: -5.24 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.05 -8.27 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598029679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.938 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds