Wall clock time and date at job start Mon Mar 30 2020 04:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 103.00172 * 2 1 4 4 C 1.52997 * 109.47147 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47055 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00218 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00109 * 179.97438 * 7 6 5 10 10 C 1.47069 * 136.05284 * 359.63697 * 9 7 6 11 11 C 1.53758 * 87.88391 * 152.95561 * 10 9 7 12 12 C 1.50709 * 114.26562 * 139.78735 * 11 10 9 13 13 H 1.07996 * 120.00245 * 266.47753 * 12 11 10 14 14 C 1.37875 * 119.99790 * 86.47657 * 12 11 10 15 15 N 1.31522 * 120.00005 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00056 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46954 * 89.99997 * 16 14 12 18 18 H 1.48497 * 109.47138 * 209.99919 * 16 14 12 19 19 H 1.48494 * 109.46859 * 330.00163 * 16 14 12 20 20 C 1.47059 * 136.05949 * 179.97438 * 9 7 6 21 21 H 1.08997 * 109.47187 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46606 * 300.00068 * 1 2 3 23 23 H 1.09002 * 109.47039 * 59.99769 * 1 2 3 24 24 H 1.08996 * 109.47243 * 60.00428 * 3 2 1 25 25 H 1.09001 * 109.47190 * 300.00011 * 3 2 1 26 26 H 1.09001 * 109.47502 * 60.00399 * 4 3 2 27 27 H 1.09001 * 109.47289 * 300.00196 * 4 3 2 28 28 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 30 30 H 1.09001 * 109.47289 * 299.99953 * 6 5 4 31 31 H 1.09004 * 109.47261 * 59.99697 * 6 5 4 32 32 H 1.08995 * 113.46811 * 267.68445 * 10 9 7 33 33 H 1.09000 * 113.46782 * 38.13190 * 10 9 7 34 34 H 1.08994 * 114.40031 * 272.67293 * 11 10 9 35 35 H 0.96999 * 119.99914 * 179.97438 * 15 14 12 36 36 H 1.09000 * 113.46879 * 321.87522 * 20 9 7 37 37 H 1.09010 * 113.46500 * 92.25198 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0866 3.4307 0.0000 6 6 5.6068 3.6031 -0.0013 7 6 5.9458 5.0715 -0.0013 8 8 5.0589 5.8986 0.0001 9 7 7.2348 5.4655 -0.0018 10 6 8.5458 4.7991 0.0040 11 6 9.1163 6.0406 -0.7012 12 6 10.4781 6.4604 -0.2108 13 1 10.5662 7.2026 0.5688 14 6 11.6116 5.8970 -0.7574 15 7 11.5043 4.9928 -1.7065 16 14 13.2995 6.4168 -0.1490 17 1 13.7100 5.5425 0.9790 18 1 14.2836 6.2936 -1.2543 19 1 13.2467 7.8275 0.3118 20 6 7.9490 6.7510 -0.0025 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8033 2.2371 0.8900 25 1 1.8032 2.2371 -0.8900 26 1 4.1609 1.4704 -0.8909 27 1 4.1617 1.4701 0.8891 28 1 3.6673 3.9008 -0.8896 29 1 3.6681 3.8998 0.8904 30 1 6.0266 3.1329 0.8880 31 1 6.0249 3.1340 -0.8920 32 1 8.9496 4.6443 1.0045 33 1 8.5772 3.8976 -0.6080 34 1 9.0384 6.0166 -1.7881 35 1 12.3018 4.5967 -2.0913 36 1 7.4722 7.5123 -0.6198 37 1 8.1945 7.1117 0.9965 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598034156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:19 Heat of formation + Delta-G solvation = -25.988331 kcal Electronic energy + Delta-G solvation = -16371.635105 eV Core-core repulsion = 13661.638925 eV Total energy + Delta-G solvation = -2709.996180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.49467 -37.33470 -35.32357 -32.70652 -30.88963 -29.31551 -28.88149 -25.65143 -24.96748 -23.95982 -21.31722 -20.22389 -18.08403 -16.88559 -16.41237 -16.18639 -16.00839 -15.10724 -14.86097 -14.56125 -14.25854 -14.00641 -13.58900 -13.54381 -12.84128 -12.71630 -12.45130 -12.14554 -11.58222 -11.51528 -11.30265 -11.24314 -11.21268 -10.96685 -10.80259 -10.64941 -10.36628 -10.23402 -9.60634 -9.22623 -8.98133 -8.59737 -7.95760 -7.86597 -6.20014 -4.25651 1.40578 2.32978 3.18593 3.22635 3.30467 3.33229 3.59933 4.31965 4.61129 4.67883 4.80526 4.81933 4.91055 5.09789 5.18567 5.26455 5.34249 5.36429 5.59177 5.64015 5.75090 5.85579 6.04553 6.15217 6.19663 6.26233 6.33547 6.43924 6.56240 6.66071 6.80241 7.53877 7.77873 8.16532 8.54087 8.76691 8.78750 9.41319 10.89760 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.043631 B = 0.003013 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.593804 B = 9290.788470 C = 9767.755810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.273 6.273 3 C -0.080 4.080 4 C -0.105 4.105 5 C -0.096 4.096 6 C -0.133 4.133 7 C 0.530 3.470 8 O -0.569 6.569 9 N -0.645 5.645 10 C 0.097 3.903 11 C 0.035 3.965 12 C -0.517 4.517 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.098 3.902 21 H 0.099 0.901 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.264 0.736 36 H 0.056 0.944 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 -8.401 3.108 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.047 6.047 3 C -0.228 4.228 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.173 4.173 7 C 0.320 3.680 8 O -0.450 6.450 9 N -0.378 5.378 10 C -0.025 4.025 11 C 0.016 3.984 12 C -0.556 4.556 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.024 4.024 21 H 0.118 0.882 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.185 -9.053 2.981 17.929 hybrid contribution 0.115 1.072 0.352 1.134 sum -15.070 -7.981 3.333 17.375 Atomic orbital electron populations 1.23357 0.94335 1.06379 1.04880 1.86957 1.07241 1.12406 1.98094 1.23437 1.00941 0.93347 1.05125 1.21373 0.92074 0.97313 1.03578 1.21291 0.94393 0.94235 1.03635 1.21547 0.97398 0.93955 1.04376 1.20157 0.80786 0.90802 0.76269 1.90623 1.46397 1.55206 1.52822 1.50059 1.04309 1.12930 1.70524 1.23661 0.78052 1.00058 1.00748 1.20384 0.91748 0.89803 0.96507 1.20917 0.89534 1.23976 1.21132 0.91841 1.25036 0.99474 0.94656 0.94399 1.69953 1.29653 1.27049 1.25630 0.86528 0.83469 0.79197 0.78462 1.20495 1.21117 1.19690 1.23325 0.91561 0.87002 1.00498 0.88203 0.90552 0.90532 0.89973 0.89931 0.90764 0.90860 0.91079 0.91182 0.89279 0.89065 0.90798 0.92149 0.91366 0.92610 0.92564 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.76 101.05 1.09 0.26 16 2 S -0.27 -2.73 22.38 -107.50 -2.41 -5.13 16 3 C -0.08 -0.75 5.94 37.16 0.22 -0.53 16 4 C -0.10 -1.07 5.22 -26.73 -0.14 -1.21 16 5 C -0.10 -1.19 4.50 -26.73 -0.12 -1.31 16 6 C -0.13 -1.90 5.53 -27.89 -0.15 -2.05 16 7 C 0.53 10.19 8.08 -10.98 -0.09 10.10 16 8 O -0.57 -12.55 16.76 5.56 0.09 -12.46 16 9 N -0.64 -13.09 3.69 -185.07 -0.68 -13.77 16 10 C 0.10 2.02 8.00 -8.37 -0.07 1.95 16 11 C 0.03 0.81 3.79 -91.13 -0.35 0.47 16 12 C -0.52 -13.10 8.83 -34.44 -0.30 -13.40 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -23.97 13.26 55.43 0.74 -23.23 16 16 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C 0.10 2.07 8.17 -8.52 -0.07 2.00 16 21 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 23 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.74 8.11 -51.93 -0.42 1.32 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.45 8.10 -51.92 -0.42 1.03 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -28.73 327.42 -8.72 -37.45 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.30 Total: -0.63 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.08 Total: -2.08 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.05 Total: -37.01 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.41 Total: -5.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.73 -8.72 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.463 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds