Wall clock time and date at job start Mon Mar 30 2020 04:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81396 * 109.47170 * 2 1 4 4 C 1.81398 * 103.00224 * 179.32110 * 3 2 1 5 5 C 1.53005 * 115.54669 * 296.08148 * 4 3 2 6 6 N 1.46502 * 109.46940 * 281.37917 * 5 4 3 7 7 C 1.34781 * 119.99355 * 184.45261 * 6 5 4 8 8 O 1.21277 * 120.00609 * 4.49199 * 7 6 5 9 9 C 1.50701 * 119.99606 * 184.49120 * 7 6 5 10 10 H 1.09004 * 109.47432 * 27.17464 * 9 7 6 11 11 C 1.53007 * 109.47379 * 267.17815 * 9 7 6 12 12 C 1.50700 * 109.47082 * 147.17638 * 9 7 6 13 13 H 1.07995 * 120.00358 * 359.97438 * 12 9 7 14 14 C 1.37880 * 119.99705 * 180.02562 * 12 9 7 15 15 N 1.31510 * 120.00432 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99674 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47370 * 89.99481 * 16 14 12 18 18 H 1.48500 * 109.46937 * 209.99776 * 16 14 12 19 19 H 1.48504 * 109.47123 * 329.99511 * 16 14 12 20 20 C 1.52990 * 117.50254 * 81.75132 * 4 3 2 21 21 C 1.52992 * 117.50043 * 150.41408 * 4 3 2 22 22 H 1.08995 * 109.47348 * 300.00196 * 1 2 3 23 23 H 1.08999 * 109.47168 * 60.00370 * 1 2 3 24 24 H 1.09006 * 109.46617 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47348 * 239.99804 * 2 1 3 26 26 H 1.09006 * 109.46831 * 119.99825 * 2 1 3 27 27 H 1.09000 * 109.47405 * 41.37615 * 5 4 3 28 28 H 1.08999 * 109.47172 * 161.37986 * 5 4 3 29 29 H 0.96994 * 120.00210 * 4.45025 * 6 5 4 30 30 H 1.08997 * 109.46449 * 296.69755 * 11 9 7 31 31 H 1.09002 * 109.46848 * 56.69091 * 11 9 7 32 32 H 1.08998 * 109.46951 * 176.69396 * 11 9 7 33 33 H 0.96996 * 120.00159 * 180.02562 * 15 14 12 34 34 H 1.09000 * 117.50060 * 215.00605 * 20 4 3 35 35 H 1.09003 * 117.49810 * 0.02562 * 20 4 3 36 36 H 1.09001 * 117.50290 * 359.97438 * 21 4 3 37 37 H 1.09007 * 117.50050 * 144.97302 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9370 1.5059 0.0209 5 6 4.5104 0.8334 1.2700 6 7 4.5724 1.8064 2.3635 7 6 5.1297 1.4616 3.5413 8 8 5.6524 0.3749 3.6699 9 6 5.1034 2.4267 4.6984 10 1 4.2416 3.0871 4.6013 11 6 6.3868 3.2598 4.6972 12 6 5.0044 1.6585 5.9911 13 1 4.9642 0.5794 5.9763 14 6 4.9642 2.3334 7.1927 15 7 5.0127 3.6475 7.2109 16 14 4.8422 1.3811 8.7952 17 1 6.2069 1.0771 9.2954 18 1 4.1162 2.1967 9.8016 19 1 4.1064 0.1124 8.5622 20 6 4.6320 1.2275 -1.3133 21 6 4.7794 2.5962 -0.6440 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8700 0.0006 1.5607 28 1 5.5129 0.4633 1.0556 29 1 4.2125 2.6985 2.2399 30 1 7.2446 2.6056 4.8531 31 1 6.4881 3.7696 3.7391 32 1 6.3419 3.9974 5.4984 33 1 4.9847 4.1222 8.0563 34 1 5.4977 0.5653 -1.3013 35 1 4.0063 1.1676 -2.2038 36 1 4.2507 3.4363 -1.0945 37 1 5.7420 2.8348 -0.1915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598337451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:49 Heat of formation + Delta-G solvation = -27.752947 kcal Electronic energy + Delta-G solvation = -17104.378727 eV Core-core repulsion = 14394.306028 eV Total energy + Delta-G solvation = -2710.072699 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.97908 -37.43871 -33.69588 -33.35731 -32.89777 -30.43633 -27.07728 -25.14984 -23.83178 -22.65362 -22.25935 -20.83672 -19.24829 -16.93639 -16.23578 -15.96890 -15.62523 -15.18221 -14.86158 -14.52864 -14.10620 -14.03904 -13.04586 -12.85476 -12.71874 -12.52894 -12.32752 -11.81873 -11.62512 -11.48302 -11.41880 -11.14799 -10.98081 -10.66992 -10.64470 -10.43186 -10.24167 -10.01257 -9.80615 -8.97836 -8.58038 -8.37682 -8.30525 -7.70615 -6.01352 -4.04759 1.55542 2.40481 3.34217 3.34968 3.40434 3.46440 3.78116 4.08223 4.44159 4.50147 4.58514 4.75522 4.80285 4.84664 5.23154 5.31725 5.40249 5.42397 5.55967 5.62648 5.66395 5.76211 5.84343 5.90532 5.92005 6.32742 6.71408 6.90786 7.03280 7.11465 7.49476 7.79959 8.01236 8.19269 8.48785 8.99723 9.27961 9.59833 11.06200 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.024975 B = 0.005002 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.857092 B = 5596.517033 C = 6143.068336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 S -0.198 6.198 4 C -0.132 4.132 5 C 0.164 3.836 6 N -0.739 5.739 7 C 0.523 3.477 8 O -0.554 6.554 9 C 0.033 3.967 10 H 0.044 0.956 11 C -0.127 4.127 12 C -0.498 4.498 13 H 0.066 0.934 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.149 4.149 21 C -0.130 4.130 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.399 0.601 30 H 0.034 0.966 31 H 0.010 0.990 32 H 0.091 0.909 33 H 0.261 0.739 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -2.295 -17.416 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.244 4.244 3 S 0.032 5.968 4 C -0.243 4.243 5 C 0.037 3.963 6 N -0.393 5.393 7 C 0.313 3.687 8 O -0.430 6.430 9 C 0.012 3.988 10 H 0.062 0.938 11 C -0.186 4.186 12 C -0.537 4.537 13 H 0.084 0.916 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.190 4.190 21 C -0.168 4.168 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.233 0.767 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.416 -2.022 -17.167 18.114 hybrid contribution 0.449 -1.184 0.837 1.517 sum -4.967 -3.205 -16.331 17.368 Atomic orbital electron populations 1.21502 0.92291 1.02542 1.03104 1.23343 0.99917 0.96015 1.05137 1.86492 1.00789 1.12113 1.97419 1.23781 0.93668 1.09641 0.97183 1.20709 0.99945 0.91466 0.84163 1.46240 1.63912 1.16029 1.13093 1.22001 0.74927 0.88857 0.82949 1.90524 1.44784 1.24564 1.83148 1.18845 0.96631 0.93013 0.90349 0.93780 1.21679 0.97049 1.00359 0.99474 1.21008 1.49941 0.93555 0.89193 0.91563 1.24932 0.95054 0.94948 0.99176 1.69875 1.50907 1.06295 1.26264 0.86455 0.78186 0.79827 0.82748 1.20606 1.21246 1.19858 1.23314 1.02263 0.99611 0.93785 1.22970 1.00326 0.92366 1.01170 0.91491 0.91920 0.91136 0.90210 0.89806 0.92210 0.91340 0.76723 0.94664 0.97085 0.89011 0.92930 0.87959 0.87667 0.87680 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.92 37.16 0.37 -0.85 16 2 C -0.10 -1.01 6.49 37.16 0.24 -0.77 16 3 S -0.20 -2.44 21.65 -107.50 -2.33 -4.77 16 4 C -0.13 -1.59 1.97 -90.63 -0.18 -1.77 16 5 C 0.16 2.53 5.59 -4.04 -0.02 2.51 16 6 N -0.74 -13.47 5.53 -60.29 -0.33 -13.80 16 7 C 0.52 12.24 6.84 -10.98 -0.08 12.17 16 8 O -0.55 -14.73 16.03 5.56 0.09 -14.64 16 9 C 0.03 0.84 2.62 -92.92 -0.24 0.60 16 10 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 11 C -0.13 -3.09 8.91 37.16 0.33 -2.76 16 12 C -0.50 -14.36 8.32 -34.44 -0.29 -14.64 16 13 H 0.07 2.00 7.20 -52.49 -0.38 1.63 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -25.40 11.35 55.43 0.63 -24.77 16 16 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.15 -1.40 9.95 -26.70 -0.27 -1.67 16 21 C -0.13 -1.33 10.00 -26.70 -0.27 -1.60 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.97 7.25 -51.92 -0.38 0.60 16 27 H 0.06 0.98 7.08 -51.93 -0.37 0.62 16 28 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 29 H 0.40 6.66 8.48 -40.82 -0.35 6.31 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -31.35 323.28 -8.57 -39.92 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.98 Total: 3.40 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.49 Total: -7.19 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.30 Total: -38.57 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.09 Total: -14.64 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.33 Total: -4.77 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.35 -8.57 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598337451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.166 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds