Wall clock time and date at job start Mon Mar 30 2020 04:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81399 * 109.47124 * 2 1 4 4 C 1.81400 * 103.00124 * 182.51909 * 3 2 1 5 5 C 1.53000 * 115.55154 * 30.70237 * 4 3 2 6 6 N 1.46496 * 109.47138 * 80.05663 * 5 4 3 7 7 C 1.34787 * 119.99726 * 174.93058 * 6 5 4 8 8 O 1.21281 * 119.99900 * 4.83721 * 7 6 5 9 9 C 1.50700 * 119.99550 * 184.83753 * 7 6 5 10 10 H 1.08997 * 109.47371 * 307.71662 * 9 7 6 11 11 C 1.53004 * 109.47126 * 67.72394 * 9 7 6 12 12 C 1.50703 * 109.46842 * 187.72085 * 9 7 6 13 13 H 1.08002 * 120.00118 * 359.97438 * 12 9 7 14 14 C 1.37878 * 120.00324 * 180.02562 * 12 9 7 15 15 N 1.31512 * 119.99713 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00183 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47163 * 59.99495 * 16 14 12 18 18 H 1.48501 * 109.46809 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46924 * 299.99445 * 16 14 12 20 20 C 1.53005 * 117.49771 * 176.36894 * 4 3 2 21 21 C 1.52999 * 60.02955 * 107.47755 * 20 4 3 22 22 H 1.08992 * 109.47076 * 300.00210 * 1 2 3 23 23 H 1.09000 * 109.47036 * 60.00516 * 1 2 3 24 24 H 1.09005 * 109.46736 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47590 * 239.99546 * 2 1 3 26 26 H 1.09000 * 109.47036 * 119.99484 * 2 1 3 27 27 H 1.08992 * 109.47201 * 200.06428 * 5 4 3 28 28 H 1.09006 * 109.46683 * 320.06016 * 5 4 3 29 29 H 0.97001 * 120.00536 * 354.92901 * 6 5 4 30 30 H 1.08994 * 109.46936 * 305.68253 * 11 9 7 31 31 H 1.08997 * 109.47179 * 65.68556 * 11 9 7 32 32 H 1.08998 * 109.46847 * 185.68106 * 11 9 7 33 33 H 0.96997 * 120.00064 * 180.02562 * 15 14 12 34 34 H 1.09005 * 117.49671 * 214.97836 * 20 4 3 35 35 H 1.09000 * 117.49677 * 359.97438 * 20 4 3 36 36 H 1.08999 * 117.49832 * 107.50269 * 21 20 4 37 37 H 1.09001 * 117.49866 * 252.51759 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9355 1.5064 -0.0777 5 6 4.4275 0.2633 -0.8218 6 7 4.3886 0.5109 -2.2652 7 6 4.8748 -0.4106 -3.1203 8 8 5.2636 -1.4805 -2.7020 9 6 4.9352 -0.1113 -4.5960 10 1 3.9558 0.2216 -4.9397 11 6 5.9667 0.9896 -4.8514 12 6 5.3338 -1.3567 -5.3452 13 1 5.5247 -2.2731 -4.8065 14 6 5.4558 -1.3260 -6.7182 15 7 5.2238 -0.2099 -7.3741 16 14 5.9491 -2.8699 -7.6469 17 1 4.9473 -3.9378 -7.3994 18 1 6.0088 -2.5749 -9.1011 19 1 7.2830 -3.3243 -7.1784 20 6 4.7862 2.7740 -0.1804 21 6 4.7529 1.9798 1.1268 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.4502 0.0396 -0.5188 28 1 3.7838 -0.5827 -0.5808 29 1 4.0131 1.3380 -2.6055 30 1 5.7345 1.8557 -4.2318 31 1 6.9614 0.6204 -4.6018 32 1 5.9389 1.2767 -5.9025 33 1 5.3092 -0.1884 -8.3401 34 1 5.6965 2.7222 -0.7778 35 1 4.2636 3.7304 -0.2017 36 1 5.6413 1.4055 1.3896 37 1 4.2082 2.4135 1.9655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598337452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:51 Heat of formation + Delta-G solvation = -26.403927 kcal Electronic energy + Delta-G solvation = -17248.507035 eV Core-core repulsion = 14538.492834 eV Total energy + Delta-G solvation = -2710.014201 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.04017 -37.41835 -33.71725 -33.53319 -32.79557 -30.48006 -27.14854 -25.11619 -23.65695 -22.68640 -22.27016 -20.88674 -19.28700 -16.90141 -16.22791 -15.97588 -15.66677 -15.10832 -14.90408 -14.57104 -14.19883 -13.98993 -13.06148 -12.91626 -12.83493 -12.47500 -12.09797 -11.78515 -11.61594 -11.52850 -11.45575 -11.07171 -10.97336 -10.72419 -10.68056 -10.42605 -10.23104 -9.97057 -9.93180 -8.95986 -8.60251 -8.46528 -8.31641 -7.65884 -6.01490 -4.04273 1.57377 2.41843 3.33274 3.37009 3.39451 3.45431 3.72808 4.04313 4.46335 4.50086 4.58825 4.78639 4.85107 4.87573 5.27441 5.31959 5.42636 5.47298 5.61120 5.65724 5.69546 5.71985 5.81409 5.93914 5.95216 6.28412 6.67608 6.84984 6.95145 7.06241 7.49260 7.77140 8.00407 8.15681 8.46522 9.03645 9.23777 9.60929 11.06505 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.005010 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.427207 B = 5587.814211 C = 6018.773603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 S -0.202 6.202 4 C -0.126 4.126 5 C 0.156 3.844 6 N -0.742 5.742 7 C 0.520 3.480 8 O -0.549 6.549 9 C 0.031 3.969 10 H 0.050 0.950 11 C -0.127 4.127 12 C -0.502 4.502 13 H 0.072 0.928 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.136 4.136 21 C -0.148 4.148 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.400 0.600 30 H 0.012 0.988 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.261 0.739 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.485 6.480 15.098 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.245 4.245 3 S 0.029 5.971 4 C -0.236 4.236 5 C 0.030 3.970 6 N -0.396 5.396 7 C 0.310 3.690 8 O -0.425 6.425 9 C 0.010 3.990 10 H 0.067 0.933 11 C -0.186 4.186 12 C -0.540 4.540 13 H 0.090 0.910 14 C -0.142 4.142 15 N -0.536 5.536 16 Si 0.728 3.272 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.176 4.176 21 C -0.189 4.189 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.234 0.766 30 H 0.031 0.969 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.835 6.673 15.231 17.623 hybrid contribution 0.789 -1.498 -0.720 1.840 sum -5.046 5.176 14.511 16.211 Atomic orbital electron populations 1.21502 0.92265 1.02676 1.02939 1.23434 0.99932 0.95603 1.05548 1.86330 1.01175 1.12689 1.96938 1.23696 0.93042 1.00404 1.06492 1.20772 1.01011 0.93236 0.81991 1.46268 1.65565 1.23046 1.04757 1.22021 0.74192 0.82522 0.90262 1.90527 1.47790 1.24461 1.79695 1.18851 0.97796 0.97456 0.84935 0.93255 1.21697 0.98058 0.95297 1.03509 1.21088 1.45996 0.95746 0.91211 0.90973 1.24945 0.95304 0.96409 0.97523 1.69876 1.49889 1.25847 1.07951 0.86514 0.79264 0.83219 0.78174 1.20245 1.21366 1.20210 1.23024 1.00614 0.93792 1.00150 1.23366 1.01266 1.02666 0.91610 0.91985 0.91548 0.91016 0.89211 0.90074 0.91046 0.91850 0.76609 0.96920 0.94835 0.89176 0.92931 0.87347 0.87902 0.88044 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.92 37.16 0.37 -0.92 16 2 C -0.10 -1.11 5.45 37.16 0.20 -0.90 16 3 S -0.20 -2.45 21.84 -107.50 -2.35 -4.80 16 4 C -0.13 -1.51 2.23 -90.58 -0.20 -1.71 16 5 C 0.16 2.34 5.28 -4.04 -0.02 2.32 16 6 N -0.74 -13.04 5.48 -60.29 -0.33 -13.37 16 7 C 0.52 11.90 7.06 -10.98 -0.08 11.82 16 8 O -0.55 -14.37 15.50 5.56 0.09 -14.28 16 9 C 0.03 0.77 2.63 -92.92 -0.24 0.53 16 10 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 11 C -0.13 -2.97 8.86 37.16 0.33 -2.64 16 12 C -0.50 -14.36 8.37 -34.44 -0.29 -14.65 16 13 H 0.07 2.18 6.78 -52.49 -0.36 1.82 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 15 N -0.90 -25.33 11.38 55.43 0.63 -24.70 16 16 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.14 -1.44 9.98 -26.73 -0.27 -1.70 16 21 C -0.15 -1.44 9.95 -26.70 -0.27 -1.71 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 1.19 6.93 -51.92 -0.36 0.83 16 26 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 27 H 0.07 1.12 7.95 -51.93 -0.41 0.70 16 28 H 0.06 0.99 5.86 -51.93 -0.30 0.69 16 29 H 0.40 6.45 8.48 -40.82 -0.35 6.10 16 30 H 0.01 0.24 8.11 -51.93 -0.42 -0.19 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 2.28 6.24 -51.93 -0.32 1.96 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -30.73 320.11 -8.60 -39.33 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.88 Total: 4.06 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.56 Total: -8.01 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.30 Total: -38.07 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.09 Total: -14.28 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.35 Total: -4.80 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.73 -8.60 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598337452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.925 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds