Wall clock time and date at job start Mon Mar 30 2020 04:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47223 * 2 1 4 4 C 1.52997 * 109.47482 * 120.00288 * 2 1 3 5 5 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 6 6 N 1.46500 * 109.47007 * 299.99872 * 4 2 1 7 7 C 1.34777 * 120.00075 * 84.99755 * 6 4 2 8 8 O 1.21287 * 119.99865 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00179 * 179.97438 * 7 6 4 10 10 S 1.81001 * 109.47021 * 180.02562 * 9 7 6 11 11 C 1.76199 * 99.99692 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00491 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99834 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00039 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00151 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47112 * 89.99359 * 15 13 11 17 17 H 1.48496 * 109.47342 * 209.99922 * 15 13 11 18 18 H 1.48507 * 109.46898 * 329.99761 * 15 13 11 19 19 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 20 20 C 1.53007 * 117.49549 * 248.74554 * 19 4 2 21 21 C 1.53001 * 117.49532 * 180.08858 * 19 4 2 22 22 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47066 * 299.99881 * 1 2 3 24 24 H 1.08996 * 109.47747 * 59.99547 * 1 2 3 25 25 H 1.08998 * 109.46862 * 240.00853 * 2 1 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47050 * 300.00346 * 3 2 1 28 28 H 1.09001 * 109.47002 * 60.00080 * 3 2 1 29 29 H 0.96997 * 120.00274 * 264.99726 * 6 4 2 30 30 H 1.08999 * 109.47169 * 300.00043 * 9 7 6 31 31 H 1.08999 * 109.47104 * 60.00393 * 9 7 6 32 32 H 0.97004 * 120.00194 * 180.02562 * 14 13 11 33 33 H 1.08998 * 115.55045 * 34.41728 * 19 4 2 34 34 H 1.08997 * 117.49929 * 359.97438 * 20 19 4 35 35 H 1.08997 * 117.49703 * 145.02482 * 20 19 4 36 36 H 1.09002 * 117.49861 * 214.97615 * 21 19 4 37 37 H 1.09001 * 117.50171 * 359.97343 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2491 6 7 1.5517 -0.0307 2.4454 7 6 0.3298 -0.3165 2.9369 8 8 -0.3655 -1.1458 2.3891 9 6 -0.1723 0.3934 4.1677 10 16 -1.8313 -0.2050 4.5748 11 6 -2.1622 0.7632 6.0093 12 1 -1.4244 1.4648 6.3694 13 6 -3.3718 0.6249 6.6760 14 7 -3.6189 1.3478 7.7479 15 14 -4.6484 -0.5880 6.0529 16 1 -4.4287 -1.9101 6.6924 17 1 -6.0073 -0.0940 6.3914 18 1 -4.5241 -0.7242 4.5793 19 6 3.5700 -0.7207 1.2494 20 6 4.2770 -2.0618 1.0429 21 6 4.2765 -1.4010 2.4237 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5137 -0.8901 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 2.1078 0.6322 2.8837 30 1 0.5003 0.1940 5.0019 31 1 -0.2089 1.4663 3.9788 32 1 -4.4640 1.2510 8.2141 33 1 4.0398 0.1666 0.8250 34 1 3.6521 -2.9445 0.9073 35 1 5.2121 -2.0568 0.4830 36 1 5.2114 -0.9616 2.7716 37 1 3.6513 -1.8487 3.1962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598381925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:58 Heat of formation + Delta-G solvation = -27.860429 kcal Electronic energy + Delta-G solvation = -17283.941011 eV Core-core repulsion = 14573.863651 eV Total energy + Delta-G solvation = -2710.077360 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.05127 -37.72698 -35.20924 -32.95268 -32.42637 -29.44888 -27.22897 -26.36774 -25.56321 -22.64476 -21.38908 -20.52140 -19.55565 -17.81508 -16.70590 -16.38376 -15.63520 -15.18770 -14.95871 -14.35070 -14.23198 -13.81740 -13.39397 -13.15040 -12.78590 -12.67672 -12.29146 -11.86969 -11.77971 -11.53151 -11.38900 -11.25417 -11.00137 -10.82391 -10.73400 -10.53151 -10.49372 -10.33722 -9.84129 -9.38104 -8.99659 -8.80377 -8.48242 -6.89863 -6.28052 -3.99298 2.77791 3.03769 3.24812 3.33810 3.51033 3.56408 3.87480 4.32632 4.34020 4.63751 4.74573 4.82415 4.95562 4.99281 5.10796 5.11192 5.13420 5.34020 5.43553 5.60474 5.67979 5.72457 5.78025 5.79232 5.91651 5.92944 6.00681 6.04535 6.06754 6.14495 6.32340 6.60491 6.68999 7.71876 7.95103 8.42727 8.57937 9.18327 10.81292 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.033073 B = 0.004847 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.407523 B = 5775.333452 C = 6017.649444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.147 4.147 4 C 0.182 3.818 5 H 0.086 0.914 6 N -0.726 5.726 7 C 0.531 3.469 8 O -0.516 6.516 9 C -0.125 4.125 10 S -0.141 6.141 11 C -0.521 4.521 12 H 0.087 0.913 13 C 0.096 3.904 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C -0.169 4.169 20 C -0.171 4.171 21 C -0.174 4.174 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.398 0.602 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.270 0.730 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.701 -2.296 -14.293 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.204 4.204 4 C 0.077 3.923 5 H 0.104 0.896 6 N -0.380 5.380 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.275 4.275 10 S 0.086 5.914 11 C -0.669 4.669 12 H 0.105 0.895 13 C -0.113 4.113 14 N -0.518 5.518 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 C -0.187 4.187 20 C -0.208 4.208 21 C -0.211 4.211 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.232 0.768 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.397 -3.632 -15.056 21.146 hybrid contribution 0.465 0.968 0.891 1.395 sum 14.863 -2.664 -14.165 20.704 Atomic orbital electron populations 1.21886 0.93912 1.02724 1.01359 1.21474 0.96975 0.96387 0.97344 1.21868 1.00378 0.96194 1.01978 1.20479 0.89945 0.97192 0.84660 0.89551 1.45985 1.17978 1.44225 1.29775 1.20180 0.80816 0.82504 0.84812 1.90701 1.55570 1.33023 1.59786 1.23289 1.03118 1.03377 0.97746 1.84761 1.12822 1.56705 1.37161 1.22332 1.06540 1.26646 1.11389 0.89451 1.24709 0.97389 0.95309 0.93860 1.69941 1.24790 1.39338 1.17720 0.86737 0.81136 0.81678 0.82310 1.19234 1.19968 1.15918 1.22667 0.94075 0.97514 1.04461 1.22978 1.02203 0.95730 0.99922 1.22935 1.02250 1.04045 0.91836 0.91887 0.92113 0.93773 0.90841 0.92796 0.92926 0.92416 0.76805 0.88699 0.88684 0.91963 0.86994 0.88600 0.88680 0.88730 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.72 37.15 0.29 -1.66 16 2 C -0.10 -1.11 2.80 -90.62 -0.25 -1.36 16 3 C -0.15 -1.39 8.79 37.16 0.33 -1.06 16 4 C 0.18 2.04 2.19 -67.93 -0.15 1.89 16 5 H 0.09 1.16 7.34 -51.93 -0.38 0.78 16 6 N -0.73 -9.06 4.08 -53.81 -0.22 -9.28 16 7 C 0.53 9.11 6.20 -10.99 -0.07 9.04 16 8 O -0.52 -10.56 12.99 5.55 0.07 -10.49 16 9 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 10 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 11 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 12 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 13 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 14 N -0.88 -26.69 13.97 55.49 0.78 -25.91 16 15 Si 0.86 21.85 27.74 -169.99 -4.71 17.14 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 19 C -0.17 -1.45 5.01 -90.62 -0.45 -1.90 16 20 C -0.17 -1.37 10.18 -26.69 -0.27 -1.64 16 21 C -0.17 -1.48 10.13 -26.69 -0.27 -1.75 16 22 H 0.06 0.97 7.53 -51.93 -0.39 0.57 16 23 H 0.06 0.98 5.78 -51.93 -0.30 0.68 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.42 6.15 -51.93 -0.32 0.10 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 29 H 0.40 4.08 8.60 -40.82 -0.35 3.73 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 32 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.11 0.85 6.08 -51.93 -0.32 0.53 16 34 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -32.14 311.60 -7.63 -39.77 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.83 Total: 2.27 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -0.42 Total: -12.64 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.56 Total: -35.20 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.14 -7.63 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598381925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.907 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds