Wall clock time and date at job start Mon Mar 30 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47039 * 2 1 4 4 N 1.46503 * 109.47053 * 119.99802 * 2 1 3 5 5 C 1.46497 * 120.00095 * 304.24358 * 4 2 1 6 6 C 1.50700 * 109.47313 * 270.00319 * 5 4 2 7 7 H 1.07999 * 119.99681 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00246 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99843 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00049 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47012 * 89.99931 * 10 8 6 12 12 H 1.48502 * 109.47214 * 210.00186 * 10 8 6 13 13 H 1.48500 * 109.47320 * 329.99957 * 10 8 6 14 14 C 1.34771 * 119.99733 * 124.24234 * 4 2 1 15 15 O 1.21291 * 119.99871 * 185.39626 * 14 4 2 16 16 C 1.50697 * 120.00292 * 5.40005 * 14 4 2 17 17 C 1.53001 * 109.47303 * 174.89268 * 16 14 4 18 18 C 1.53040 * 113.15187 * 185.00157 * 17 16 14 19 19 S 1.81427 * 89.93288 * 211.82949 * 18 17 16 20 20 C 1.53042 * 113.15484 * 84.62099 * 17 16 14 21 21 H 1.09005 * 109.47202 * 295.64365 * 1 2 3 22 22 H 1.09004 * 109.47287 * 55.64191 * 1 2 3 23 23 H 1.09003 * 109.47202 * 175.64111 * 1 2 3 24 24 H 1.08996 * 109.47071 * 239.99984 * 2 1 3 25 25 H 1.08996 * 109.46856 * 184.58449 * 3 2 1 26 26 H 1.09000 * 109.46818 * 304.58430 * 3 2 1 27 27 H 1.08996 * 109.47210 * 64.58294 * 3 2 1 28 28 H 1.09004 * 109.46928 * 29.99937 * 5 4 2 29 29 H 1.08998 * 109.47103 * 149.99585 * 5 4 2 30 30 H 0.97005 * 119.99537 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47520 * 54.88710 * 16 14 4 32 32 H 1.09006 * 109.46852 * 294.89017 * 16 14 4 33 33 H 1.09003 * 112.52198 * 314.80671 * 17 16 14 34 34 H 1.09001 * 113.14906 * 327.10235 * 18 17 16 35 35 H 1.09001 * 113.15161 * 96.55088 * 18 17 16 36 36 H 1.08992 * 113.14696 * 263.40873 * 20 17 16 37 37 H 1.09000 * 113.14487 * 32.85495 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5894 -0.2466 2.5248 6 6 2.5496 0.7939 3.0410 7 1 3.3951 1.0940 2.4398 8 6 2.3488 1.3626 4.2808 9 7 1.3189 0.9974 5.0128 10 14 3.5395 2.6518 4.9210 11 1 3.0802 4.0007 4.5030 12 1 3.5923 2.5841 6.4035 13 1 4.8925 2.3954 4.3653 14 6 2.8621 -1.7344 1.0744 15 8 3.1893 -2.3674 2.0559 16 6 3.3992 -2.1149 -0.2812 17 6 4.4240 -3.2404 -0.1262 18 6 5.1144 -3.6108 -1.4409 19 16 5.2558 -5.3303 -0.8797 20 6 3.7871 -4.6310 -0.0729 21 1 -0.3634 0.4448 0.9265 22 1 -0.3634 0.5800 -0.8484 23 1 -0.3634 -1.0247 -0.0781 24 1 1.8933 -0.5138 -0.8900 25 1 3.1268 1.4436 -0.0821 26 1 1.6111 1.9794 -0.8461 27 1 1.7453 1.9321 0.9282 28 1 0.5895 0.1825 2.4592 29 1 1.5755 -1.0978 3.2054 30 1 1.1775 1.3979 5.8849 31 1 3.8771 -1.2489 -0.7390 32 1 2.5795 -2.4546 -0.9145 33 1 5.1243 -3.0582 0.6890 34 1 4.4683 -3.4961 -2.3113 35 1 6.0798 -3.1217 -1.5706 36 1 3.6412 -4.9968 0.9434 37 1 2.8850 -4.7126 -0.6791 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601025378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:38 Heat of formation + Delta-G solvation = -25.487266 kcal Electronic energy + Delta-G solvation = -17793.028346 eV Core-core repulsion = 15083.053894 eV Total energy + Delta-G solvation = -2709.974452 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45483 -36.90386 -35.71396 -32.85096 -30.85458 -29.45136 -26.88940 -26.64038 -26.27260 -22.97431 -21.42521 -20.50031 -18.11425 -16.76014 -16.48670 -16.36150 -15.66805 -15.10221 -14.57694 -14.06562 -13.56329 -13.55079 -13.25191 -12.98834 -12.80252 -12.42041 -12.34730 -11.73914 -11.69117 -11.52735 -11.36001 -11.13916 -10.96982 -10.87372 -10.68819 -10.58854 -10.37707 -10.06286 -10.00588 -9.55186 -8.89022 -8.42957 -7.82414 -7.65131 -6.04757 -4.08299 1.77717 1.92901 3.28431 3.35340 3.37187 3.42991 3.84757 4.35739 4.43982 4.71768 4.85852 5.17029 5.18981 5.23610 5.29344 5.34387 5.41315 5.51185 5.58343 5.63873 5.68947 5.83347 6.00552 6.13881 6.22239 6.24490 6.32454 6.57271 6.94415 7.11375 7.47791 7.56549 7.92357 8.24445 8.44215 8.90303 9.08956 9.56066 11.03283 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.023383 B = 0.005629 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.180225 B = 4972.857121 C = 5517.798520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.162 4.162 4 N -0.594 5.594 5 C 0.244 3.756 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.506 3.494 15 O -0.541 6.541 16 C -0.132 4.132 17 C -0.071 4.071 18 C -0.077 4.077 19 S -0.316 6.316 20 C -0.067 4.067 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.265 -3.910 -14.714 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 C -0.220 4.220 4 N -0.326 5.326 5 C 0.125 3.875 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.292 3.708 15 O -0.419 6.419 16 C -0.174 4.174 17 C -0.091 4.091 18 C -0.226 4.226 19 S -0.089 6.089 20 C -0.215 4.215 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.149 -5.446 -14.129 15.294 hybrid contribution -0.044 1.727 0.433 1.781 sum 2.105 -3.719 -13.696 14.347 Atomic orbital electron populations 1.22162 0.95508 1.01593 1.02821 1.20977 0.94209 0.93989 0.87897 1.22205 1.00775 0.95961 1.03077 1.48319 1.45408 1.30151 1.08684 1.19258 0.95310 0.95660 0.77317 1.21440 1.10835 1.21625 1.02034 0.92374 1.24929 0.95544 0.97142 0.96524 1.69935 1.28570 1.43050 1.11825 0.86558 0.81511 0.81571 0.78154 1.20689 1.21165 1.19943 1.20208 0.79657 0.80751 0.90135 1.90672 1.58845 1.52475 1.39938 1.21754 0.98989 0.99259 0.97423 1.22290 0.97190 0.93027 0.96611 1.24410 1.04566 0.92357 1.01235 1.88922 1.37294 1.20476 1.62242 1.24424 0.96652 0.95749 1.04658 0.91035 0.92270 0.92993 0.90803 0.93051 0.93232 0.89663 0.94752 0.93959 0.92784 0.88652 0.89174 0.86229 0.87885 0.88554 0.87919 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.19 37.16 0.34 -1.93 16 2 C 0.13 2.02 3.12 -67.93 -0.21 1.81 16 3 C -0.16 -2.49 8.74 37.16 0.32 -2.17 16 4 N -0.59 -11.69 2.39 -167.47 -0.40 -12.09 16 5 C 0.24 6.07 4.73 -5.20 -0.02 6.05 16 6 C -0.52 -14.04 7.71 -34.44 -0.27 -14.31 16 7 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 10 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 14 C 0.51 9.65 7.65 -10.99 -0.08 9.57 16 15 O -0.54 -12.71 15.36 5.55 0.09 -12.63 16 16 C -0.13 -1.68 3.81 -27.88 -0.11 -1.79 16 17 C -0.07 -0.90 2.76 -90.58 -0.25 -1.15 16 18 C -0.08 -0.79 7.49 37.18 0.28 -0.52 16 19 S -0.32 -4.14 24.80 -107.50 -2.67 -6.81 16 20 C -0.07 -0.84 7.46 37.18 0.28 -0.57 16 21 H 0.07 1.18 6.34 -51.93 -0.33 0.85 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.88 5.85 -51.93 -0.30 0.57 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.61 6.60 -51.93 -0.34 1.26 16 28 H 0.03 0.87 6.13 -51.93 -0.32 0.55 16 29 H 0.04 1.22 7.35 -51.93 -0.38 0.83 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.10 1.07 7.85 -51.93 -0.41 0.66 16 32 H 0.09 0.93 7.47 -51.93 -0.39 0.54 16 33 H 0.12 1.80 7.80 -51.93 -0.41 1.39 16 34 H 0.10 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.10 1.09 7.94 -51.93 -0.41 0.67 16 LS Contribution 311.04 15.07 4.69 4.69 Total: -1.00 -31.32 311.04 -8.18 -39.50 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.78 Total: -0.32 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 0.18 Total: -3.43 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.34 Total: -37.40 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.67 Total: -6.81 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.32 -8.18 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601025378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.010 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds