Wall clock time and date at job start Mon Mar 30 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47039 * 2 1 4 4 N 1.46503 * 109.47053 * 119.99802 * 2 1 3 5 5 C 1.46497 * 120.00095 * 304.24358 * 4 2 1 6 6 C 1.50700 * 109.47313 * 270.00319 * 5 4 2 7 7 H 1.07999 * 119.99681 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00246 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99843 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00049 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47012 * 89.99931 * 10 8 6 12 12 H 1.48502 * 109.47214 * 210.00186 * 10 8 6 13 13 H 1.48500 * 109.47320 * 329.99957 * 10 8 6 14 14 C 1.34771 * 119.99733 * 124.24234 * 4 2 1 15 15 O 1.21291 * 119.99871 * 185.39626 * 14 4 2 16 16 C 1.50697 * 120.00292 * 5.40005 * 14 4 2 17 17 C 1.53001 * 109.47303 * 174.89268 * 16 14 4 18 18 C 1.53040 * 113.15187 * 185.00157 * 17 16 14 19 19 S 1.81427 * 89.93288 * 211.82949 * 18 17 16 20 20 C 1.53042 * 113.15484 * 84.62099 * 17 16 14 21 21 H 1.09005 * 109.47202 * 295.64365 * 1 2 3 22 22 H 1.09004 * 109.47287 * 55.64191 * 1 2 3 23 23 H 1.09003 * 109.47202 * 175.64111 * 1 2 3 24 24 H 1.08996 * 109.47071 * 239.99984 * 2 1 3 25 25 H 1.08996 * 109.46856 * 184.58449 * 3 2 1 26 26 H 1.09000 * 109.46818 * 304.58430 * 3 2 1 27 27 H 1.08996 * 109.47210 * 64.58294 * 3 2 1 28 28 H 1.09004 * 109.46928 * 29.99937 * 5 4 2 29 29 H 1.08998 * 109.47103 * 149.99585 * 5 4 2 30 30 H 0.97005 * 119.99537 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47520 * 54.88710 * 16 14 4 32 32 H 1.09006 * 109.46852 * 294.89017 * 16 14 4 33 33 H 1.09003 * 112.52198 * 314.80671 * 17 16 14 34 34 H 1.09001 * 113.14906 * 327.10235 * 18 17 16 35 35 H 1.09001 * 113.15161 * 96.55088 * 18 17 16 36 36 H 1.08992 * 113.14696 * 263.40873 * 20 17 16 37 37 H 1.09000 * 113.14487 * 32.85495 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5894 -0.2466 2.5248 6 6 2.5496 0.7939 3.0410 7 1 3.3951 1.0940 2.4398 8 6 2.3488 1.3626 4.2808 9 7 1.3189 0.9974 5.0128 10 14 3.5395 2.6518 4.9210 11 1 3.0802 4.0007 4.5030 12 1 3.5923 2.5841 6.4035 13 1 4.8925 2.3954 4.3653 14 6 2.8621 -1.7344 1.0744 15 8 3.1893 -2.3674 2.0559 16 6 3.3992 -2.1149 -0.2812 17 6 4.4240 -3.2404 -0.1262 18 6 5.1144 -3.6108 -1.4409 19 16 5.2558 -5.3303 -0.8797 20 6 3.7871 -4.6310 -0.0729 21 1 -0.3634 0.4448 0.9265 22 1 -0.3634 0.5800 -0.8484 23 1 -0.3634 -1.0247 -0.0781 24 1 1.8933 -0.5138 -0.8900 25 1 3.1268 1.4436 -0.0821 26 1 1.6111 1.9794 -0.8461 27 1 1.7453 1.9321 0.9282 28 1 0.5895 0.1825 2.4592 29 1 1.5755 -1.0978 3.2054 30 1 1.1775 1.3979 5.8849 31 1 3.8771 -1.2489 -0.7390 32 1 2.5795 -2.4546 -0.9145 33 1 5.1243 -3.0582 0.6890 34 1 4.4683 -3.4961 -2.3113 35 1 6.0798 -3.1217 -1.5706 36 1 3.6412 -4.9968 0.9434 37 1 2.8850 -4.7126 -0.6791 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601025378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:38 Heat of formation + Delta-G solvation = -44.730004 kcal Electronic energy + Delta-G solvation = -17793.862774 eV Core-core repulsion = 15083.053894 eV Total energy + Delta-G solvation = -2710.808880 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90357 -38.07661 -37.12073 -34.89673 -32.33970 -30.86428 -28.54027 -27.89530 -27.17471 -24.87666 -22.73855 -21.61450 -19.51156 -18.56629 -18.13527 -17.44123 -16.90391 -16.64243 -16.22415 -15.55204 -14.86399 -14.76613 -14.46971 -14.26580 -13.92849 -13.81845 -13.62856 -13.28726 -13.16525 -12.89559 -12.78502 -12.64936 -12.46061 -12.27851 -12.15004 -12.06379 -11.66317 -11.60379 -11.43713 -11.03446 -10.58126 -10.43929 -9.33129 -8.83700 -8.17157 -6.28893 0.86837 0.98078 1.36860 1.39680 1.49089 1.94100 2.35309 2.49831 3.12616 3.35323 3.73686 3.77827 4.05598 4.11573 4.32922 4.37614 4.45152 4.50694 4.54457 4.66507 4.68755 4.85979 4.92012 4.94777 5.07990 5.12518 5.18360 5.21756 5.30777 5.49978 5.66138 5.69491 5.95814 6.15232 6.78798 6.93917 7.35577 7.60079 8.89864 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.023383 B = 0.005629 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.180225 B = 4972.857121 C = 5517.798520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 C -0.159 4.159 4 N -0.600 5.600 5 C 0.261 3.739 6 C -0.523 4.523 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.493 3.507 15 O -0.599 6.599 16 C -0.114 4.114 17 C -0.074 4.074 18 C -0.047 4.047 19 S -0.370 6.370 20 C -0.060 4.060 21 H 0.033 0.967 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.124 0.876 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.024 0.976 29 H -0.010 1.010 30 H 0.264 0.736 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 -2.783 -18.280 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 C -0.217 4.217 4 N -0.331 5.331 5 C 0.139 3.861 6 C -0.562 4.562 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.283 3.717 15 O -0.481 6.481 16 C -0.156 4.156 17 C -0.095 4.095 18 C -0.194 4.194 19 S -0.144 6.144 20 C -0.208 4.208 21 H 0.052 0.948 22 H 0.114 0.886 23 H 0.077 0.923 24 H 0.142 0.858 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.008 0.992 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.158 0.842 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.614 -4.304 -17.749 18.450 hybrid contribution -0.229 1.354 1.536 2.060 sum 2.385 -2.950 -16.213 16.651 Atomic orbital electron populations 1.22141 0.94786 1.02377 1.02408 1.21422 0.94897 0.93957 0.87333 1.22153 1.00961 0.96152 1.02384 1.48364 1.45711 1.30854 1.08140 1.18636 0.94722 0.93015 0.79711 1.21697 1.10775 1.21600 1.02130 0.92520 1.25804 0.97219 0.99383 0.96952 1.70065 1.30417 1.44538 1.12240 0.85531 0.79210 0.79532 0.77258 1.18988 1.21218 1.19675 1.21429 0.78527 0.79540 0.92231 1.90652 1.60531 1.54239 1.42673 1.21762 1.00081 1.00311 0.93439 1.22163 0.96988 0.92934 0.97374 1.24416 1.05694 0.88787 1.00539 1.89189 1.38329 1.23690 1.63174 1.24487 0.97325 0.95518 1.03499 0.94764 0.88643 0.92288 0.85803 0.93100 0.89416 0.94046 0.95802 0.99170 0.92749 0.85610 0.85035 0.89544 0.84225 0.87174 0.90768 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 9.19 71.98 0.66 -3.40 16 2 C 0.13 3.42 3.12 44.99 0.14 3.56 16 3 C -0.16 -4.44 8.74 71.98 0.63 -3.81 16 4 N -0.60 -23.37 2.39 -802.14 -1.92 -25.29 16 5 C 0.26 13.60 4.73 85.63 0.41 14.01 16 6 C -0.52 -29.09 7.71 25.60 0.20 -28.89 16 7 H 0.06 3.09 7.59 -2.91 -0.02 3.07 16 8 C 0.00 0.26 5.46 84.65 0.46 0.73 16 9 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 10 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 C 0.49 18.49 7.65 87.66 0.67 19.16 16 15 O -0.60 -29.29 15.36 -3.07 -0.05 -29.34 16 16 C -0.11 -2.46 3.81 29.85 0.11 -2.35 16 17 C -0.07 -1.71 2.76 -10.77 -0.03 -1.74 16 18 C -0.05 -0.77 7.49 72.00 0.54 -0.23 16 19 S -0.37 -9.22 24.80 -56.49 -1.40 -10.62 16 20 C -0.06 -1.45 7.46 72.00 0.54 -0.91 16 21 H 0.03 1.12 6.34 -2.38 -0.02 1.10 16 22 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.12 2.17 5.85 -2.39 -0.01 2.15 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.53 6.60 -2.39 -0.02 1.51 16 28 H 0.02 1.29 6.13 -2.38 -0.01 1.27 16 29 H -0.01 -0.61 7.35 -2.39 -0.02 -0.63 16 30 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 31 H 0.13 2.06 7.85 -2.39 -0.02 2.04 16 32 H 0.13 1.85 7.47 -2.38 -0.02 1.83 16 33 H 0.09 2.61 7.80 -2.39 -0.02 2.59 16 34 H 0.14 1.40 8.12 -2.39 -0.02 1.38 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.13 2.34 7.94 -2.39 -0.02 2.32 16 Total: -1.00 -75.05 311.04 4.32 -70.74 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.04 Total: 7.82 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 4.33 Total: -3.89 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -1.63 Total: -81.34 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.05 Total: -29.34 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.40 Total: -10.62 kcal Total: -75.05 4.32 -70.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601025378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.008 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds