Wall clock time and date at job start Mon Mar 30 2020 04:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 C 1.50700 * 109.46850 * 240.00237 * 2 1 3 5 5 H 1.08002 * 119.99958 * 239.99643 * 4 2 1 6 6 C 1.37873 * 120.00506 * 60.00388 * 4 2 1 7 7 N 1.31517 * 119.99860 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00404 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47439 * 89.99615 * 8 6 4 10 10 H 1.48498 * 109.47162 * 210.00011 * 8 6 4 11 11 H 1.48501 * 109.46629 * 329.99432 * 8 6 4 12 12 C 1.52998 * 109.47042 * 120.00159 * 2 1 3 13 13 N 1.46498 * 109.46986 * 300.00079 * 12 2 1 14 14 C 1.34778 * 119.99815 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00050 * 0.02562 * 14 13 12 16 16 C 1.50710 * 119.99848 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.46807 * 180.02562 * 16 14 13 18 18 C 1.53042 * 113.14878 * 185.00289 * 17 16 14 19 19 S 1.81425 * 89.93235 * 211.82965 * 18 17 16 20 20 C 1.53039 * 113.15312 * 84.62568 * 17 16 14 21 21 H 1.09001 * 109.47164 * 300.00166 * 1 2 3 22 22 H 1.09007 * 109.47335 * 59.99913 * 1 2 3 23 23 H 1.09002 * 109.47199 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47135 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47664 * 299.99802 * 3 2 1 26 26 H 1.09001 * 109.47317 * 59.99928 * 3 2 1 27 27 H 0.97002 * 120.00152 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47026 * 180.02562 * 12 2 1 29 29 H 1.09002 * 109.47133 * 59.99948 * 12 2 1 30 30 H 0.97000 * 120.00415 * 359.97438 * 13 12 2 31 31 H 1.08999 * 109.46599 * 59.99780 * 16 14 13 32 32 H 1.08991 * 109.46748 * 299.99931 * 16 14 13 33 33 H 1.09002 * 112.52349 * 314.80838 * 17 16 14 34 34 H 1.09002 * 113.14805 * 327.10916 * 18 17 16 35 35 H 1.09003 * 113.15177 * 96.55360 * 18 17 16 36 36 H 1.08997 * 113.14758 * 263.40323 * 20 17 16 37 37 H 1.08997 * 113.15183 * 32.84975 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4120 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5757 -1.4764 3.7807 16 6 1.3757 0.2199 4.9000 17 6 1.8867 -0.5008 6.1492 18 6 1.3267 0.0796 7.4499 19 16 2.8672 -0.3545 8.3042 20 6 3.2933 -0.0629 6.5634 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.7082 1.1610 -3.4844 28 1 3.1299 -0.7209 1.2494 29 1 1.6766 -1.7490 1.2492 30 1 0.9943 0.7582 2.3564 31 1 0.2857 0.2199 4.9003 32 1 1.7391 1.2474 4.8996 33 1 1.7774 -1.5832 6.0809 34 1 1.1529 1.1545 7.3996 35 1 0.4606 -0.4659 7.8247 36 1 4.0747 -0.7280 6.1961 37 1 3.4988 0.9843 6.3417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601626816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:05 Heat of formation + Delta-G solvation = -50.092378 kcal Electronic energy + Delta-G solvation = -17292.277920 eV Core-core repulsion = 14581.236510 eV Total energy + Delta-G solvation = -2711.041410 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.81588 -38.39841 -37.37147 -34.92799 -32.77440 -30.11627 -27.52357 -27.38290 -27.18381 -26.38010 -22.27896 -20.97938 -20.53600 -18.46808 -17.70475 -17.37504 -16.78681 -16.62911 -16.38095 -15.85666 -14.94745 -14.81053 -14.50822 -14.22000 -13.95916 -13.84075 -13.72434 -13.17592 -13.06731 -12.79627 -12.62518 -12.58857 -12.26980 -12.20740 -12.12447 -11.67792 -11.44931 -11.23609 -11.11057 -10.73462 -10.59467 -10.38033 -9.85129 -8.85057 -8.01406 -6.16786 0.87532 0.97546 1.42382 1.45808 1.53482 1.82264 2.38064 2.53761 3.22226 3.38033 3.77272 3.83277 4.14835 4.35736 4.43981 4.53176 4.54138 4.56996 4.68456 4.72370 4.76969 4.86982 5.05396 5.10091 5.15104 5.22173 5.23641 5.42610 5.67303 5.69011 5.70929 6.19597 6.25469 6.46076 6.78893 6.88064 7.45270 7.51064 8.97065 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.056614 B = 0.003726 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.456772 B = 7513.410260 C = 7708.488480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.712 5.712 14 C 0.500 3.500 15 O -0.595 6.595 16 C -0.118 4.118 17 C -0.071 4.071 18 C -0.050 4.050 19 S -0.376 6.376 20 C -0.063 4.063 21 H 0.042 0.958 22 H 0.060 0.940 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.260 0.740 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.411 0.589 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 4.257 15.377 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.024 3.976 13 N -0.364 5.364 14 C 0.288 3.712 15 O -0.476 6.476 16 C -0.160 4.160 17 C -0.092 4.092 18 C -0.197 4.197 19 S -0.150 6.150 20 C -0.211 4.211 21 H 0.061 0.939 22 H 0.079 0.921 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.248 0.752 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.153 0.847 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.966 3.323 16.627 17.069 hybrid contribution 0.060 -0.207 -2.189 2.200 sum -1.906 3.116 14.438 14.893 Atomic orbital electron populations 1.21666 0.96989 0.98589 1.00566 1.18361 0.93336 0.93081 0.90294 1.21660 0.97798 0.97765 1.00555 1.21306 1.31644 1.12102 0.91803 0.94010 1.25419 0.95204 0.95585 1.00856 1.69901 1.36991 1.23222 1.23543 0.85812 0.78637 0.78548 0.80124 1.20545 1.20822 1.20213 1.21188 0.96772 0.94985 0.84668 1.46162 1.52891 1.32007 1.05351 1.21431 0.79701 0.84323 0.85723 1.90674 1.40446 1.28936 1.87551 1.21744 1.04803 1.00971 0.88449 1.22185 0.92297 1.01494 0.93195 1.24429 0.96450 1.06348 0.92505 1.89298 1.15819 1.91340 1.18543 1.24522 1.01905 1.05848 0.88834 0.93900 0.92090 0.96519 0.96516 0.92107 0.93903 0.93061 0.94747 0.94725 0.75198 0.84822 0.85300 0.88546 0.84701 0.87052 0.90298 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 8.08 71.98 0.58 -4.50 16 2 C 0.05 2.21 0.50 -52.93 -0.03 2.19 16 3 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 4 C -0.53 -27.60 8.01 25.60 0.21 -27.39 16 5 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 6 C 0.03 1.51 5.15 84.65 0.44 1.95 16 7 N -0.90 -46.97 9.35 21.45 0.20 -46.76 16 8 Si 0.94 42.14 29.54 68.60 2.03 44.17 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.15 5.99 4.50 86.38 0.39 6.38 16 13 N -0.71 -21.42 4.96 -463.06 -2.30 -23.72 16 14 C 0.50 14.00 7.83 87.66 0.69 14.69 16 15 O -0.59 -22.35 15.78 -3.03 -0.05 -22.39 16 16 C -0.12 -1.79 5.48 29.85 0.16 -1.62 16 17 C -0.07 -1.25 2.80 -10.77 -0.03 -1.28 16 18 C -0.05 -0.65 7.49 72.00 0.54 -0.11 16 19 S -0.38 -8.24 24.80 -56.49 -1.40 -9.64 16 20 C -0.06 -1.24 7.49 72.00 0.54 -0.70 16 21 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 22 H 0.06 2.90 6.07 -2.38 -0.01 2.89 16 23 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.06 2.90 6.07 -2.39 -0.01 2.88 16 26 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 27 H 0.26 13.12 8.31 -92.71 -0.77 12.35 16 28 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.41 10.17 6.16 -92.71 -0.57 9.59 16 31 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.13 1.24 7.89 -2.39 -0.02 1.22 16 33 H 0.10 2.20 7.71 -2.39 -0.02 2.18 16 34 H 0.13 1.05 8.12 -2.39 -0.02 1.03 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.12 1.88 7.94 -2.39 -0.02 1.86 16 Total: -1.00 -63.55 307.89 3.03 -60.52 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.48 Total: 12.71 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.06 Total: -14.87 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -2.10 Total: -70.48 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.40 Total: -9.64 kcal Total: -63.55 3.03 -60.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601626816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.428 kcal (2) G-P(sol) polarization free energy of solvation -63.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds