Wall clock time and date at job start Mon Mar 30 2020 04:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47145 * 179.97438 * 12 11 10 14 14 C 1.42902 * 114.00186 * 179.97438 * 13 12 11 15 15 H 1.09004 * 109.73234 * 29.99589 * 14 13 12 16 16 C 1.53363 * 109.73555 * 269.34291 * 14 13 12 17 17 O 1.42890 * 109.27547 * 188.09113 * 16 14 13 18 18 C 1.42894 * 114.50100 * 64.93278 * 17 16 14 19 19 C 1.53360 * 109.27504 * 295.06727 * 18 17 16 20 20 C 1.51513 * 109.73971 * 150.65307 * 14 13 12 21 21 N 1.27950 * 121.21178 * 348.07369 * 20 14 13 22 22 O 1.41597 * 120.00002 * 179.97438 * 21 20 14 23 23 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 29 29 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 30 30 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 31 31 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 32 32 H 1.09000 * 109.50465 * 308.02966 * 16 14 13 33 33 H 1.08998 * 109.50564 * 68.15179 * 16 14 13 34 34 H 1.09006 * 109.50086 * 55.00452 * 18 17 16 35 35 H 1.08999 * 109.50834 * 175.12612 * 18 17 16 36 36 H 1.09002 * 109.73852 * 171.89962 * 19 18 17 37 37 H 1.08992 * 109.73955 * 292.55426 * 19 18 17 38 38 H 0.96702 * 114.00066 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 6 6.0617 -4.0789 0.0040 13 8 7.4907 -4.0788 0.0046 14 6 8.0720 -5.3843 0.0057 15 1 7.4101 -6.0823 -0.5070 16 6 8.2972 -5.8497 1.4495 17 8 9.0466 -7.0663 1.4415 18 6 10.3750 -6.9406 0.9303 19 6 10.3123 -6.5605 -0.5542 20 6 9.4160 -5.3466 -0.6927 21 7 9.7811 -4.3266 -1.3735 22 8 11.0432 -4.3186 -2.0153 23 1 -0.4849 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1509 -0.8875 27 1 3.6580 -3.1497 0.8925 28 1 5.9157 -2.1230 -0.8865 29 1 5.9143 -2.1221 0.8934 30 1 5.6977 -4.5926 0.8938 31 1 5.6990 -4.5929 -0.8862 32 1 8.8497 -5.0855 1.9962 33 1 7.3344 -6.0185 1.9319 34 1 10.9056 -6.1648 1.4824 35 1 10.8990 -7.8899 1.0410 36 1 11.3127 -6.3226 -0.9159 37 1 9.9005 -7.3897 -1.1294 38 1 11.2304 -3.5059 -2.5048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686578392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:03 Heat of formation + Delta-G solvation = -99.219954 kcal Electronic energy + Delta-G solvation = -18859.479247 eV Core-core repulsion = 15703.554635 eV Total energy + Delta-G solvation = -3155.924612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05970 -37.77258 -37.13628 -34.87597 -33.88798 -32.36386 -31.05604 -29.61778 -28.77291 -25.11392 -23.77388 -23.57268 -21.61500 -20.19232 -19.65550 -17.71111 -17.06212 -16.77642 -16.59847 -16.32215 -15.68546 -15.20397 -14.97008 -14.56327 -14.19425 -13.91428 -13.75151 -13.22431 -12.91499 -12.63789 -12.56920 -11.94240 -11.85403 -11.68885 -11.34833 -11.08398 -10.76858 -10.70557 -10.56422 -10.11433 -9.92833 -9.87981 -9.69413 -9.56818 -9.35952 -9.15854 -8.51789 -6.02618 -4.00504 1.67644 2.70457 3.14389 3.33038 3.40222 3.44907 3.52620 4.25462 4.38315 4.47519 4.47662 4.68593 4.75162 4.80130 5.16166 5.21113 5.26217 5.31306 5.32182 5.41521 5.45827 5.62555 5.65275 5.93007 5.98249 6.32550 6.44275 6.61851 6.63139 6.72479 6.89168 7.12369 7.32907 7.45911 7.47431 7.81775 8.55811 9.02269 9.60272 11.10911 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.034967 B = 0.003347 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.562859 B = 8364.399863 C = 8886.715792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.100 4.100 11 C -0.118 4.118 12 C 0.058 3.942 13 O -0.362 6.362 14 C 0.117 3.883 15 H 0.096 0.904 16 C 0.045 3.955 17 O -0.373 6.373 18 C 0.065 3.935 19 C -0.146 4.146 20 C 0.114 3.886 21 N -0.294 5.294 22 O -0.420 6.420 23 H 0.263 0.737 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.586 -13.911 0.360 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.156 4.156 12 C -0.017 4.017 13 O -0.281 6.281 14 C 0.056 3.944 15 H 0.114 0.886 16 C -0.033 4.033 17 O -0.291 6.291 18 C -0.013 4.013 19 C -0.185 4.185 20 C -0.081 4.081 21 N -0.035 5.035 22 O -0.328 6.328 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 22.282 -13.459 0.351 26.034 hybrid contribution 0.782 0.840 -0.434 1.227 sum 23.064 -12.618 -0.083 26.290 Atomic orbital electron populations 1.69919 1.06317 1.26867 1.51338 1.25045 0.94740 0.99229 0.94586 0.86764 0.80382 0.83550 0.78521 1.20312 1.21422 1.18949 1.21169 0.89594 0.94444 1.50656 0.91068 1.19565 0.97004 0.92207 0.96348 1.21403 0.90919 1.00221 1.01210 1.21661 0.97479 0.93548 1.02883 1.22850 0.78880 0.99796 1.00219 1.88075 1.21064 1.24154 1.94798 1.21616 0.89441 0.87776 0.95540 0.88649 1.23208 0.97968 0.87222 0.94872 1.87934 1.25619 1.31819 1.83774 1.22664 0.84393 1.02709 0.91520 1.21960 1.00732 0.96471 0.99368 1.25288 0.96186 0.92408 0.94180 1.76338 0.98077 1.22467 1.06569 1.88356 1.30235 1.44990 1.69207 0.92770 0.96561 0.97003 0.92689 0.92622 0.91563 0.91585 0.93012 0.93054 0.91487 0.87063 0.92539 0.87667 0.88481 0.88581 0.74613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 13.96 55.43 0.77 -27.46 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.33 4.04 -27.89 -0.11 -0.45 16 10 C -0.10 -1.94 5.15 -26.73 -0.14 -2.08 16 11 C -0.12 -1.92 5.58 -26.73 -0.15 -2.07 16 12 C 0.06 0.78 5.76 37.16 0.21 1.00 16 13 O -0.36 -4.98 9.60 -35.23 -0.34 -5.32 16 14 C 0.12 1.28 3.08 -27.30 -0.08 1.20 16 15 H 0.10 0.93 7.80 -51.93 -0.41 0.52 16 16 C 0.05 0.43 6.49 37.35 0.24 0.67 16 17 O -0.37 -3.51 10.68 -35.23 -0.38 -3.89 16 18 C 0.06 0.48 6.85 37.34 0.26 0.74 16 19 C -0.15 -1.23 6.14 -27.29 -0.17 -1.40 16 20 C 0.11 1.31 6.57 -78.13 -0.51 0.79 16 21 N -0.29 -3.86 11.55 35.98 0.42 -3.45 16 22 O -0.42 -4.49 13.61 -11.47 -0.16 -4.65 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 25 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.82 7.01 -51.93 -0.36 0.46 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.41 2.63 9.28 45.56 0.42 3.05 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -33.94 317.10 -5.80 -39.74 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.35 Total: -2.01 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.88 Total: -15.14 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 1.19 Total: -30.91 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.87 Total: -13.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.94 -5.80 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.479 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds