Wall clock time and date at job start Mon Mar 30 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00363 * 2 1 4 4 H 1.48499 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47445 * 300.00174 * 3 2 1 6 6 H 1.48503 * 109.47249 * 60.00022 * 3 2 1 7 7 C 1.37880 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00275 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.47347 * 179.97438 * 12 11 10 14 14 C 1.42900 * 113.99909 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.73442 * 329.99862 * 14 13 12 16 16 C 1.53361 * 109.77678 * 90.68245 * 14 13 12 17 17 O 1.42892 * 109.27821 * 171.92796 * 16 14 13 18 18 C 1.42879 * 114.49918 * 295.06646 * 17 16 14 19 19 C 1.53367 * 109.28000 * 64.92902 * 18 17 16 20 20 C 1.51505 * 108.09723 * 307.74782 * 19 18 17 21 21 N 1.27956 * 121.21408 * 228.43964 * 20 19 18 22 22 O 1.41595 * 119.99985 * 359.97415 * 21 20 19 23 23 H 0.96998 * 119.99511 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46605 * 60.00048 * 9 7 2 25 25 H 1.09000 * 109.47374 * 300.00814 * 9 7 2 26 26 H 1.09000 * 109.46931 * 60.00126 * 10 9 7 27 27 H 1.09002 * 109.46867 * 300.00561 * 10 9 7 28 28 H 1.09000 * 109.47219 * 60.00031 * 11 10 9 29 29 H 1.09000 * 109.47229 * 300.00504 * 11 10 9 30 30 H 1.09000 * 109.46931 * 59.99855 * 12 11 10 31 31 H 1.09002 * 109.46867 * 300.00291 * 12 11 10 32 32 H 1.09006 * 109.50191 * 291.86914 * 16 14 13 33 33 H 1.08994 * 109.50645 * 51.98528 * 16 14 13 34 34 H 1.09004 * 109.50640 * 304.99327 * 18 17 16 35 35 H 1.09001 * 109.53590 * 184.89112 * 18 17 16 36 36 H 1.08997 * 109.73729 * 188.09186 * 19 18 17 37 37 H 1.09005 * 109.73460 * 67.39283 * 19 18 17 38 38 H 0.96704 * 113.99971 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9872 -0.0012 12 6 2.4743 -6.1502 -0.0018 13 8 1.7598 -7.3877 -0.0018 14 6 2.5997 -8.5438 -0.0018 15 1 3.5349 -8.3193 -0.5148 16 6 2.8908 -8.9737 1.4412 17 8 3.5701 -10.2307 1.4311 18 6 2.7973 -11.3177 0.9184 19 6 2.4988 -11.0712 -0.5656 20 6 1.8947 -9.6884 -0.7007 21 7 0.8278 -9.4943 -1.3799 22 8 0.1899 -10.5828 -2.0226 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8718 -3.6045 0.8895 27 1 2.8719 -3.6044 -0.8905 28 1 0.8538 -5.0446 -0.8914 29 1 0.8531 -5.0451 0.8885 30 1 3.1010 -6.0929 0.8882 31 1 3.1010 -6.0919 -0.8918 32 1 3.5184 -8.2248 1.9245 33 1 1.9531 -9.0712 1.9881 34 1 1.8604 -11.3905 1.4708 35 1 3.3573 -12.2465 1.0276 36 1 1.7929 -11.8184 -0.9281 37 1 3.4228 -11.1271 -1.1411 38 1 -0.6079 -10.3383 -2.5114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686578396.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:04 Heat of formation + Delta-G solvation = -102.720456 kcal Electronic energy + Delta-G solvation = -18807.059195 eV Core-core repulsion = 15650.982790 eV Total energy + Delta-G solvation = -3156.076406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.01834 -37.71116 -37.09245 -34.74301 -33.83998 -32.37032 -30.97559 -29.46122 -28.40771 -24.97276 -23.76514 -23.53553 -21.76829 -20.22268 -19.58547 -17.66262 -17.00420 -16.71257 -16.30246 -16.18056 -15.62202 -15.13374 -14.89694 -14.51082 -14.42589 -13.88055 -13.64666 -13.15195 -12.80906 -12.58892 -12.38599 -11.83750 -11.66133 -11.46254 -11.17654 -10.96870 -10.78501 -10.55101 -10.51253 -10.41482 -10.04691 -9.86236 -9.65479 -9.32953 -9.29295 -9.02395 -8.33035 -5.97853 -4.00239 1.72220 2.75174 3.19328 3.32150 3.39499 3.43585 3.57001 4.29801 4.41990 4.48008 4.52134 4.72528 4.78996 4.83852 5.20731 5.25881 5.32937 5.35996 5.38046 5.46196 5.50690 5.69305 5.72077 6.08114 6.09383 6.46431 6.49336 6.67564 6.77993 6.91952 7.06736 7.23523 7.52345 7.70907 7.85459 8.02924 8.44952 9.07387 9.63697 11.13566 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.038983 B = 0.003116 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.097399 B = 8983.505548 C = 9483.520878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.115 4.115 12 C 0.059 3.941 13 O -0.361 6.361 14 C 0.116 3.884 15 H 0.095 0.905 16 C 0.045 3.955 17 O -0.374 6.374 18 C 0.065 3.935 19 C -0.146 4.146 20 C 0.113 3.887 21 N -0.292 5.292 22 O -0.420 6.420 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.346 -23.571 0.306 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.017 4.017 13 O -0.280 6.280 14 C 0.056 3.944 15 H 0.113 0.887 16 C -0.033 4.033 17 O -0.292 6.292 18 C -0.013 4.013 19 C -0.185 4.185 20 C -0.081 4.081 21 N -0.033 5.033 22 O -0.328 6.328 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.981 -23.160 0.294 23.691 hybrid contribution 0.227 0.519 -0.409 0.699 sum 5.209 -22.641 -0.114 23.232 Atomic orbital electron populations 1.69984 1.06056 1.26446 1.51000 1.25042 0.94855 0.99281 0.95409 0.86543 0.80099 0.83834 0.77558 1.19749 1.21042 1.21027 1.21310 0.93059 0.91127 1.50349 0.92654 1.19097 0.94002 0.91185 0.97360 1.21581 0.99195 0.93394 1.00343 1.21634 0.98035 0.92673 1.02958 1.22876 0.95633 0.83227 0.99980 1.88089 1.32368 1.12775 1.94768 1.21606 0.93196 0.84104 0.95481 0.88731 1.23209 0.98955 0.86173 0.94938 1.87926 1.41053 1.16459 1.83751 1.22658 0.96602 0.90490 0.91536 1.21957 1.02791 0.94418 0.99357 1.25287 0.92576 0.96022 0.94251 1.76355 1.08463 1.12024 1.06492 1.88350 1.45394 1.29868 1.69213 0.93077 0.96523 0.96517 0.93257 0.93310 0.91559 0.91589 0.93188 0.93215 0.87100 0.91456 0.92536 0.87703 0.88485 0.88620 0.74586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.33 16 11 C -0.12 -2.02 5.58 -26.73 -0.15 -2.17 16 12 C 0.06 0.83 5.76 37.16 0.21 1.05 16 13 O -0.36 -5.22 9.60 -35.23 -0.34 -5.56 16 14 C 0.12 1.33 3.08 -27.30 -0.08 1.25 16 15 H 0.10 0.96 7.80 -51.93 -0.41 0.55 16 16 C 0.05 0.45 6.49 37.34 0.24 0.69 16 17 O -0.37 -3.62 10.68 -35.23 -0.38 -4.00 16 18 C 0.06 0.50 6.85 37.35 0.26 0.76 16 19 C -0.15 -1.28 6.15 -27.30 -0.17 -1.45 16 20 C 0.11 1.35 6.57 -78.14 -0.51 0.83 16 21 N -0.29 -3.99 11.55 35.97 0.42 -3.58 16 22 O -0.42 -4.66 13.61 -11.47 -0.16 -4.82 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 34 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.85 7.01 -51.93 -0.36 0.49 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.41 2.81 9.28 45.56 0.42 3.23 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -33.55 320.69 -6.18 -39.72 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.38 Total: -2.16 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.89 Total: -14.68 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 1.15 Total: -30.13 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.87 Total: -14.38 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.55 -6.18 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686578396.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.995 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds