Wall clock time and date at job start Mon Mar 30 2020 04:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47499 * 2 1 4 4 C 1.37098 * 120.00315 * 94.73956 * 3 2 1 5 5 H 1.07997 * 120.00274 * 320.55854 * 4 3 2 6 6 C 1.38948 * 119.99671 * 140.55505 * 4 3 2 7 7 N 1.31408 * 119.99907 * 159.64324 * 6 4 3 8 8 Si 1.86802 * 120.00026 * 339.64414 * 6 4 3 9 9 H 1.48499 * 109.47200 * 94.13038 * 8 6 4 10 10 H 1.48505 * 109.47050 * 214.12825 * 8 6 4 11 11 H 1.48498 * 109.47326 * 334.12655 * 8 6 4 12 12 C 1.34779 * 119.99359 * 274.74897 * 3 2 1 13 13 O 1.21296 * 119.99760 * 176.02050 * 12 3 2 14 14 C 1.50694 * 120.00387 * 356.01471 * 12 3 2 15 15 H 1.08993 * 109.97308 * 57.15813 * 14 12 3 16 16 C 1.51592 * 109.98803 * 178.53182 * 14 12 3 17 17 C 1.52978 * 109.41457 * 222.02355 * 16 14 12 18 18 C 1.53778 * 115.51153 * 318.18622 * 17 16 14 19 19 S 1.79967 * 113.13220 * 315.96957 * 18 17 16 20 20 C 1.83628 * 102.84752 * 86.70189 * 19 18 17 21 21 C 1.45396 * 109.69337 * 291.07428 * 20 19 18 22 22 H 1.08995 * 109.46948 * 174.79293 * 1 2 3 23 23 H 1.08997 * 109.46834 * 294.78961 * 1 2 3 24 24 H 1.08994 * 109.46778 * 54.79023 * 1 2 3 25 25 H 1.09007 * 109.46668 * 119.99814 * 2 1 3 26 26 H 1.09004 * 109.47162 * 239.99322 * 2 1 3 27 27 H 0.97005 * 119.99921 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47976 * 342.00093 * 16 14 12 29 29 H 1.08998 * 109.48254 * 102.04116 * 16 14 12 30 30 H 1.08997 * 108.27782 * 196.62263 * 17 16 14 31 31 H 1.08999 * 108.27627 * 79.75341 * 17 16 14 32 32 H 1.09007 * 108.75261 * 195.02361 * 18 17 16 33 33 H 1.09007 * 108.65796 * 76.84432 * 18 17 16 34 34 H 1.08994 * 109.43647 * 171.00209 * 20 19 18 35 35 H 1.09000 * 109.43718 * 51.13738 * 20 19 18 36 36 H 1.09000 * 108.30343 * 303.20517 * 21 20 19 37 37 H 1.08998 * 108.30957 * 186.25389 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3395 1.9948 1.1832 5 1 1.7273 1.8342 2.0583 6 6 3.4526 2.8232 1.2565 7 7 3.5496 3.7095 2.2218 8 14 4.8112 2.6770 -0.0173 9 1 4.5733 3.6549 -1.1093 10 1 6.1217 2.9583 0.6222 11 1 4.8188 1.3017 -0.5774 12 6 2.1520 2.0486 -1.1633 13 8 2.4871 3.2143 -1.1586 14 6 1.8852 1.3466 -2.4698 15 1 0.8726 0.9433 -2.4757 16 6 2.0669 2.3127 -3.6237 17 6 0.9468 2.1024 -4.6442 18 6 0.5833 0.6370 -4.9360 19 16 2.0242 -0.4205 -5.1462 20 6 2.4125 -0.9286 -3.4249 21 6 2.8996 0.2172 -2.6739 22 1 -0.3633 -1.0234 -0.0933 23 1 -0.3633 0.4309 0.9330 24 1 -0.3633 0.5925 -0.8396 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5140 -0.8900 27 1 4.3269 4.2876 2.2732 28 1 2.0307 3.3361 -3.2501 29 1 3.0308 2.1332 -4.0998 30 1 1.2448 2.5735 -5.5808 31 1 0.0535 2.6103 -4.2808 32 1 -0.0151 0.5989 -5.8463 33 1 -0.0143 0.2545 -4.1085 34 1 3.1778 -1.7045 -3.4396 35 1 1.5119 -1.3173 -2.9495 36 1 3.7658 0.6249 -3.1951 37 1 3.2276 -0.1299 -1.6941 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690661003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:18 Heat of formation + Delta-G solvation = -26.469070 kcal Electronic energy + Delta-G solvation = -18781.348028 eV Core-core repulsion = 16071.331002 eV Total energy + Delta-G solvation = -2710.017026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74185 -36.46707 -35.08495 -33.05988 -32.18812 -29.69376 -29.26197 -26.05931 -24.13822 -22.89201 -21.93026 -20.54613 -18.99014 -17.32066 -16.33600 -15.95553 -15.42610 -15.27835 -14.56623 -14.22137 -13.98256 -13.65810 -13.37003 -13.10235 -12.83846 -12.57985 -12.43302 -12.26694 -12.00445 -11.66414 -11.30587 -10.91699 -10.82561 -10.68808 -10.65235 -10.38208 -10.21864 -10.02814 -9.88737 -9.51455 -8.53590 -8.44799 -7.66151 -7.60757 -6.19826 -3.92498 1.74739 2.55475 3.28737 3.44293 3.66115 3.82426 4.40184 4.56458 4.76470 4.78555 4.97239 5.07425 5.14494 5.19683 5.25504 5.44166 5.55825 5.56135 5.62444 5.74507 5.82505 5.86887 5.93455 6.00327 6.08250 6.15716 6.31772 6.37268 6.41232 6.54372 6.66330 6.72466 7.85582 7.96950 8.78971 8.94284 9.44220 9.84126 10.85960 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.008464 C = 0.007780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.535706 B = 3307.478927 C = 3598.181819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 N -0.459 5.459 4 C -0.352 4.352 5 H 0.092 0.908 6 C 0.091 3.909 7 N -0.865 5.865 8 Si 0.908 3.092 9 H -0.252 1.252 10 H -0.310 1.310 11 H -0.279 1.279 12 C 0.450 3.550 13 O -0.543 6.543 14 C -0.102 4.102 15 H 0.086 0.914 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.083 4.083 19 S -0.276 6.276 20 C -0.059 4.059 21 C -0.134 4.134 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.272 0.728 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -9.991 -12.017 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.036 4.036 3 N -0.181 5.181 4 C -0.477 4.477 5 H 0.110 0.890 6 C -0.118 4.118 7 N -0.500 5.500 8 Si 0.739 3.261 9 H -0.177 1.177 10 H -0.239 1.239 11 H -0.205 1.205 12 C 0.239 3.761 13 O -0.425 6.425 14 C -0.124 4.124 15 H 0.104 0.896 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.231 4.231 19 S -0.050 6.050 20 C -0.207 4.207 21 C -0.173 4.173 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.992 -9.562 -12.836 16.497 hybrid contribution -0.043 0.193 0.664 0.693 sum -4.035 -9.369 -12.172 15.881 Atomic orbital electron populations 1.22166 0.97151 1.00508 1.02433 1.21820 0.93872 0.85864 1.02072 1.43631 1.58691 1.09869 1.05872 1.18799 1.11542 1.29047 0.88328 0.89004 1.25260 0.97559 0.93220 0.95754 1.69767 1.29178 1.17346 1.33742 0.86464 0.78224 0.79088 0.82362 1.17730 1.23918 1.20475 1.20094 0.83518 0.87331 0.85138 1.90512 1.49439 1.16596 1.85995 1.21132 0.99686 0.96393 0.95177 0.89588 1.21553 0.98384 1.01569 0.93562 1.21770 0.99585 0.93893 0.99955 1.23320 0.97152 0.97555 1.05098 1.86683 1.42010 1.61485 1.14799 1.22307 1.04766 1.00429 0.93161 1.20782 0.99735 0.95146 1.01649 0.92830 0.92146 0.93199 0.90603 0.91696 0.91863 0.88962 0.91129 0.91872 0.91689 0.88414 0.90111 0.87579 0.89788 0.90515 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.11 37.16 0.38 -2.12 16 2 C 0.09 1.55 5.45 -4.04 -0.02 1.52 16 3 N -0.46 -10.73 2.16 -114.81 -0.25 -10.98 16 4 C -0.35 -9.87 9.70 -14.93 -0.14 -10.01 16 5 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 6 C 0.09 2.69 4.83 -17.47 -0.08 2.61 16 7 N -0.87 -26.67 13.96 55.50 0.77 -25.89 16 8 Si 0.91 24.19 24.75 -169.99 -4.21 19.98 16 9 H -0.25 -7.03 6.23 56.52 0.35 -6.68 16 10 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.45 10.42 4.96 -10.99 -0.05 10.37 16 13 O -0.54 -14.92 10.71 5.54 0.06 -14.86 16 14 C -0.10 -1.77 1.42 -92.40 -0.13 -1.90 16 15 H 0.09 1.33 4.86 -51.93 -0.25 1.08 16 16 C -0.11 -1.87 5.02 -27.45 -0.14 -2.01 16 17 C -0.11 -1.44 5.64 -26.34 -0.15 -1.59 16 18 C -0.08 -0.94 5.60 37.56 0.21 -0.73 16 19 S -0.28 -3.47 21.56 -107.50 -2.32 -5.79 16 20 C -0.06 -0.71 5.88 33.58 0.20 -0.51 16 21 C -0.13 -2.06 3.57 -30.22 -0.11 -2.17 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.76 7.00 -51.93 -0.36 0.39 16 25 H 0.08 1.32 8.00 -51.93 -0.42 0.91 16 26 H 0.07 0.98 3.95 -51.93 -0.21 0.77 16 27 H 0.27 7.90 8.31 -40.82 -0.34 7.56 16 28 H 0.09 1.79 6.56 -51.93 -0.34 1.45 16 29 H 0.07 1.17 6.84 -51.93 -0.36 0.81 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.95 8.14 -51.69 -0.42 0.53 16 33 H 0.08 0.88 7.06 -51.69 -0.36 0.51 16 34 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.89 7.82 -51.93 -0.41 0.49 16 36 H 0.08 1.25 6.99 -51.93 -0.36 0.89 16 37 H 0.08 1.38 5.64 -51.93 -0.29 1.09 16 LS Contribution 285.69 15.07 4.31 4.31 Total: -1.00 -32.64 285.69 -7.18 -39.83 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.50 Total: -0.04 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.05 Total: -6.54 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.53 Total: -36.87 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.06 Total: -14.86 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.21 Total: 19.98 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.32 Total: -5.79 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.64 -7.18 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690661003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.359 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds