Wall clock time and date at job start Mon Mar 30 2020 04:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35700 * 126.22641 * 2 1 4 4 N 1.40805 * 126.06354 * 0.04231 * 3 2 1 5 5 C 1.40219 * 107.87011 * 180.02562 * 3 2 1 6 6 N 1.30869 * 108.35963 * 359.75979 * 5 3 2 7 7 N 1.35963 * 126.22409 * 180.02562 * 2 1 3 8 8 C 1.46500 * 126.07122 * 359.95408 * 7 2 1 9 9 C 1.50703 * 109.47108 * 90.00692 * 8 7 2 10 10 C 1.38633 * 119.75264 * 90.00144 * 9 8 7 11 11 C 1.37617 * 120.24769 * 179.97438 * 10 9 8 12 12 C 1.40712 * 119.74610 * 0.28046 * 11 10 9 13 13 C 1.41400 * 120.24377 * 179.70276 * 12 11 10 14 14 H 1.07999 * 120.00087 * 24.27936 * 13 12 11 15 15 C 1.39947 * 119.99564 * 204.28785 * 13 12 11 16 16 N 1.30821 * 120.00278 * 17.72524 * 15 13 12 17 17 Si 1.86794 * 119.99656 * 197.71822 * 15 13 12 18 18 H 1.48501 * 109.47529 * 60.00194 * 17 15 13 19 19 H 1.48506 * 109.47057 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47379 * 300.00118 * 17 15 13 21 21 C 1.40721 * 119.51082 * 359.46549 * 12 11 10 22 22 C 1.37617 * 119.74346 * 0.50994 * 21 12 11 23 23 H 1.09003 * 109.46758 * 269.99560 * 1 2 3 24 24 H 1.08995 * 109.47387 * 29.99361 * 1 2 3 25 25 H 1.09003 * 109.47070 * 150.00019 * 1 2 3 26 26 H 0.97000 * 120.00476 * 359.97438 * 4 3 2 27 27 H 0.97006 * 119.99545 * 180.02562 * 4 3 2 28 28 H 1.08000 * 125.82122 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47179 * 330.00576 * 8 7 2 30 30 H 1.09004 * 109.47652 * 210.00306 * 8 7 2 31 31 H 1.07997 * 119.87048 * 359.95699 * 10 9 8 32 32 H 1.08001 * 120.12635 * 179.97438 * 11 10 9 33 33 H 0.96999 * 120.00115 * 179.97438 * 16 15 13 34 34 H 1.07999 * 120.12797 * 180.25726 * 21 12 11 35 35 H 1.08001 * 119.87226 * 179.74551 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3090 1.0947 0.0000 4 7 1.8806 2.4360 0.0008 5 6 3.6398 0.6531 -0.0006 6 7 3.6399 -0.6556 0.0043 7 7 2.3105 -1.0968 -0.0005 8 6 1.8649 -2.4924 -0.0002 9 6 1.7114 -2.9711 -1.4209 10 6 2.7879 -3.5556 -2.0700 11 6 2.6589 -3.9968 -3.3672 12 6 1.4302 -3.8473 -4.0365 13 6 1.2878 -4.2911 -5.3715 14 1 1.9340 -5.0671 -5.7544 15 6 0.3096 -3.7246 -6.1966 16 7 -0.2316 -2.5773 -5.8767 17 14 -0.2230 -4.6065 -7.7547 18 1 -0.7769 -5.9391 -7.4046 19 1 -1.2632 -3.8038 -8.4468 20 1 0.9480 -4.7774 -8.6518 21 6 0.3428 -3.2574 -3.3659 22 6 0.4945 -2.8240 -2.0686 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 0.9329 2.6426 0.0011 27 1 2.5334 3.1536 0.0004 28 1 4.5155 1.2852 -0.0011 29 1 0.9069 -2.5679 0.5142 30 1 2.6025 -3.1093 0.5133 31 1 3.7313 -3.6649 -1.5559 32 1 3.4989 -4.4515 -3.8712 33 1 -0.9093 -2.1845 -6.4488 34 1 -0.6060 -3.1415 -3.8687 35 1 -0.3375 -2.3672 -1.5533 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697693350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:07 Heat of formation + Delta-G solvation = 87.555242 kcal Electronic energy + Delta-G solvation = -18313.067107 eV Core-core repulsion = 15504.843346 eV Total energy + Delta-G solvation = -2808.223761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62253 -37.65751 -34.56362 -33.75939 -32.63928 -30.80124 -29.49658 -28.94215 -26.51351 -25.83491 -23.83747 -21.16472 -20.85486 -19.94051 -19.15170 -17.37325 -16.56468 -15.65299 -15.50444 -15.08007 -14.62089 -14.09758 -13.82188 -13.62766 -13.48135 -12.64063 -12.48973 -12.41936 -12.01496 -11.77429 -11.66859 -11.51979 -11.11387 -11.05910 -10.87368 -10.49285 -10.24566 -10.16002 -9.74000 -9.44565 -9.20507 -8.59468 -7.53822 -7.41496 -6.84378 -6.71058 -4.43739 2.36131 2.59753 2.99661 3.01714 3.03637 3.06136 3.39991 3.42794 3.87008 4.41484 4.55910 5.14790 5.20439 5.41778 5.62416 5.66919 5.75803 5.84235 5.94659 5.97630 6.10289 6.31716 6.37076 6.48965 6.89573 6.90296 6.99983 7.20443 7.29594 7.54098 7.60309 7.77495 7.96530 7.97926 8.01504 8.14535 8.22667 8.38908 8.55981 8.81352 8.89600 10.09685 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028351 B = 0.005139 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.391013 B = 5446.837206 C = 5817.660009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.009 3.991 3 C 0.043 3.957 4 N -0.879 5.879 5 C -0.008 4.008 6 N -0.276 5.276 7 N -0.343 5.343 8 C 0.198 3.802 9 C -0.248 4.248 10 C -0.060 4.060 11 C -0.230 4.230 12 C 0.118 3.882 13 C -0.459 4.459 14 H 0.079 0.921 15 C 0.076 3.924 16 N -0.788 5.788 17 Si 0.910 3.090 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.170 4.170 22 C -0.081 4.081 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.390 0.610 27 H 0.392 0.608 28 H 0.171 0.829 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.282 0.718 34 H 0.118 0.882 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 5.512 8.271 9.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.066 4.066 4 N -0.427 5.427 5 C -0.195 4.195 6 N -0.100 5.100 7 N -0.130 5.130 8 C 0.079 3.921 9 C -0.250 4.250 10 C -0.079 4.079 11 C -0.250 4.250 12 C 0.116 3.884 13 C -0.488 4.488 14 H 0.097 0.903 15 C -0.143 4.143 16 N -0.412 5.412 17 Si 0.734 3.266 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.189 4.189 22 C -0.100 4.100 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.217 0.783 27 H 0.219 0.781 28 H 0.188 0.812 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.500 4.397 8.207 9.324 hybrid contribution -0.772 0.924 -0.944 1.530 sum -1.272 5.322 7.262 9.093 Atomic orbital electron populations 1.20291 0.88304 1.03684 1.01761 1.20215 0.93834 0.86721 1.11308 1.17367 0.91932 0.85561 1.11702 1.41391 1.08526 1.02047 1.90767 1.23290 0.96018 0.92509 1.07652 1.77146 0.98815 1.11571 1.22441 1.48829 1.02391 1.05680 1.56117 1.20318 0.99063 0.76391 0.96361 1.19085 0.96254 1.13986 0.95706 1.20385 0.95806 0.97094 0.94626 1.20967 0.97253 1.11051 0.95708 1.17661 0.90115 0.88156 0.92516 1.19635 1.14733 1.18546 0.95863 0.90308 1.25950 0.94637 0.93784 0.99904 1.69823 1.21056 1.13287 1.37060 0.86342 0.79116 0.80425 0.80733 1.18704 1.20256 1.18917 1.21274 0.99490 1.05100 0.93069 1.20530 0.95082 0.99154 0.95253 0.91673 0.91049 0.90583 0.78293 0.78118 0.81190 0.90087 0.89889 0.89251 0.88923 0.90677 0.86395 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 9.74 36.01 0.35 -0.80 16 2 C 0.01 0.16 6.98 -81.67 -0.57 -0.41 16 3 C 0.04 0.69 7.22 -83.90 -0.61 0.08 16 4 N -0.88 -10.67 9.19 32.30 0.30 -10.37 16 5 C -0.01 -0.14 12.03 -17.22 -0.21 -0.34 16 6 N -0.28 -5.38 12.57 30.70 0.39 -4.99 16 7 N -0.34 -6.46 3.63 -57.97 -0.21 -6.67 16 8 C 0.20 3.56 6.21 -5.19 -0.03 3.53 16 9 C -0.25 -5.36 5.49 -104.33 -0.57 -5.93 16 10 C -0.06 -1.38 9.67 -39.66 -0.38 -1.77 16 11 C -0.23 -5.75 9.80 -38.87 -0.38 -6.13 16 12 C 0.12 3.15 5.57 -106.82 -0.60 2.56 16 13 C -0.46 -12.11 9.05 -37.74 -0.34 -12.45 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 15 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 16 N -0.79 -20.19 10.95 55.55 0.61 -19.59 16 17 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 18 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 21 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 22 C -0.08 -1.84 9.46 -39.66 -0.38 -2.21 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.89 7.61 -51.93 -0.40 0.50 16 25 H 0.08 1.14 5.39 -51.93 -0.28 0.86 16 26 H 0.39 4.11 8.22 -40.82 -0.34 3.77 16 27 H 0.39 3.87 8.96 -40.82 -0.37 3.51 16 28 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.08 1.25 7.64 -51.93 -0.40 0.86 16 30 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 31 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 33 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 34 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 35 H 0.09 1.74 5.96 -52.49 -0.31 1.42 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -29.73 298.84 -7.66 -37.39 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -4.07 Total: 13.13 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -4.14 Total: -26.77 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 1.08 Total: -41.63 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.73 -7.66 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697693350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.943 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds