Wall clock time and date at job start Mon Mar 30 2020 04:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.40443 * 110.99939 * 66.04673 * 12 11 10 14 14 C 1.54271 * 111.68900 * 188.30166 * 13 12 11 15 15 O 1.40632 * 109.12835 * 282.76983 * 14 13 12 16 16 C 1.44089 * 116.72426 * 93.90502 * 15 14 13 17 17 C 1.53622 * 112.55346 * 318.11223 * 16 15 14 18 18 H 1.09004 * 109.03179 * 79.13871 * 17 16 15 19 19 C 1.50694 * 109.03075 * 198.06142 * 17 16 15 20 20 O 1.20828 * 119.99802 * 120.00308 * 19 17 16 21 21 O 1.34227 * 120.00207 * 299.99829 * 19 17 16 22 22 C 1.47631 * 111.00078 * 194.35078 * 12 11 10 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 27 27 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 28 28 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 29 29 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 30 30 H 1.09004 * 109.04003 * 308.87198 * 13 12 11 31 31 H 1.09001 * 109.03569 * 67.73224 * 13 12 11 32 32 H 1.08994 * 109.53403 * 42.66767 * 14 13 12 33 33 H 1.09009 * 109.52961 * 162.87844 * 14 13 12 34 34 H 1.08999 * 108.86373 * 78.90527 * 16 15 14 35 35 H 1.08997 * 108.86222 * 197.32352 * 16 15 14 36 36 H 0.96704 * 117.00310 * 179.97438 * 21 19 17 37 37 H 1.09005 * 109.58470 * 273.29189 * 22 12 11 38 38 H 1.08993 * 109.58886 * 33.72628 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 7 2.4351 -6.1035 0.0212 13 6 3.1661 -6.1349 1.2200 14 6 4.3106 -7.1677 1.1631 15 8 3.7766 -8.4573 1.3348 16 6 3.4538 -9.1898 0.1367 17 6 2.7772 -8.3114 -0.9266 18 1 3.5388 -7.7238 -1.4394 19 6 2.0843 -9.1985 -1.9285 20 8 0.8908 -9.1070 -2.0927 21 8 2.7931 -10.0903 -2.6385 22 6 1.7643 -7.3748 -0.3152 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5529 0.8956 25 1 0.6244 -2.5609 -0.8844 26 1 2.8721 -3.6081 -0.8798 27 1 2.8721 -3.6002 0.9002 28 1 0.8536 -5.0411 0.9058 29 1 0.8541 -5.0485 -0.8741 30 1 3.5876 -5.1469 1.4054 31 1 2.4948 -6.3929 2.0391 32 1 4.8096 -7.1058 0.1960 33 1 5.0275 -6.9614 1.9580 34 1 4.3712 -9.6048 -0.2806 35 1 2.7837 -10.0098 0.3948 36 1 2.3047 -10.6375 -3.2688 37 1 1.3532 -7.8218 0.5900 38 1 0.9625 -7.1871 -1.0293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700411663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:06 Heat of formation + Delta-G solvation = -139.117969 kcal Electronic energy + Delta-G solvation = -19559.081041 eV Core-core repulsion = 16401.426321 eV Total energy + Delta-G solvation = -3157.654720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.94024 -39.38820 -36.89057 -36.41753 -33.89307 -33.18949 -31.40586 -28.85941 -26.91515 -25.83677 -23.85807 -22.83710 -21.30175 -20.37418 -19.79062 -18.30690 -17.36779 -17.12810 -16.26680 -16.00236 -15.64780 -15.28877 -14.86020 -14.56764 -14.25603 -13.99086 -13.49204 -13.38641 -12.53577 -12.32441 -12.14352 -11.91896 -11.77742 -11.54071 -11.30479 -11.11819 -10.83727 -10.79397 -10.70649 -10.53773 -10.49166 -9.71373 -9.59016 -9.33095 -9.05457 -8.33130 -8.09671 -5.98274 -4.00575 1.90159 2.64709 3.33102 3.39247 3.42479 3.54935 4.11163 4.30449 4.48074 4.58021 4.74084 5.02888 5.08366 5.22404 5.29135 5.37192 5.37624 5.48674 5.62642 5.73200 5.82029 5.86963 6.00712 6.08105 6.20690 6.29860 6.69349 6.72979 7.06491 7.13741 7.30654 7.52707 7.60005 7.69554 7.84399 8.01938 8.44774 9.06631 9.63455 11.13183 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.031697 B = 0.003955 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.158768 B = 7077.825101 C = 7577.950652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.106 4.106 11 C 0.063 3.937 12 N -0.555 5.555 13 C 0.033 3.967 14 C 0.062 3.938 15 O -0.381 6.381 16 C 0.079 3.921 17 C -0.113 4.113 18 H 0.125 0.875 19 C 0.489 3.511 20 O -0.507 6.507 21 O -0.516 6.516 22 C 0.068 3.932 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.411 0.589 37 H 0.052 0.948 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.627 -20.318 -1.413 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.144 4.144 11 C -0.063 4.063 12 N -0.279 5.279 13 C -0.096 4.096 14 C -0.015 4.015 15 O -0.300 6.300 16 C 0.002 3.998 17 C -0.133 4.133 18 H 0.143 0.857 19 C 0.330 3.670 20 O -0.394 6.394 21 O -0.328 6.328 22 C -0.059 4.059 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.270 0.730 37 H 0.070 0.930 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.653 -19.930 -1.323 21.390 hybrid contribution -0.474 0.612 -0.167 0.792 sum 7.179 -19.319 -1.490 20.663 Atomic orbital electron populations 1.69965 1.06068 1.26564 1.50968 1.25026 0.94833 0.99249 0.95381 0.86601 0.79832 0.83511 0.78090 1.20677 1.21265 1.19885 1.21239 0.93018 0.91027 1.50410 0.92684 1.19079 0.94044 0.91358 0.97178 1.21705 0.99213 0.92706 1.00746 1.22299 0.93316 0.90096 1.00623 1.59135 1.29029 1.03791 1.35978 1.21760 0.96296 1.00870 0.90717 1.22673 0.95029 0.81543 1.02283 1.87544 1.83284 1.29322 1.29850 1.22772 0.99296 0.92809 0.84918 1.21597 1.00706 0.95909 0.95078 0.85695 1.23193 0.85743 0.78270 0.79771 1.90743 1.16467 1.66937 1.65297 1.84538 1.46136 1.49215 1.52890 1.21719 0.94613 0.88940 1.00631 0.93030 0.96753 0.96575 0.92565 0.93338 0.94936 0.91008 0.88765 0.95099 0.91909 0.88814 0.91542 0.89358 0.73030 0.93006 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.16 5.06 -26.73 -0.14 -2.30 16 11 C 0.06 1.09 4.96 -3.82 -0.02 1.07 16 12 N -0.56 -8.12 4.08 -239.58 -0.98 -9.10 16 13 C 0.03 0.45 5.01 -6.51 -0.03 0.41 16 14 C 0.06 0.68 6.43 37.82 0.24 0.92 16 15 O -0.38 -4.43 10.13 -34.28 -0.35 -4.77 16 16 C 0.08 0.75 6.03 37.48 0.23 0.97 16 17 C -0.11 -1.20 2.19 -92.51 -0.20 -1.40 16 18 H 0.13 1.32 7.39 -51.93 -0.38 0.93 16 19 C 0.49 5.17 7.47 36.00 0.27 5.43 16 20 O -0.51 -6.99 16.09 -18.75 -0.30 -7.29 16 21 O -0.52 -3.86 13.34 -39.25 -0.52 -4.38 16 22 C 0.07 0.91 4.56 -4.48 -0.02 0.89 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.96 6.36 -51.93 -0.33 0.63 16 28 H 0.03 0.58 8.11 -51.93 -0.42 0.16 16 29 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 30 H 0.09 1.33 5.94 -51.93 -0.31 1.02 16 31 H 0.03 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.06 0.64 7.10 -51.93 -0.37 0.28 16 33 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.77 7.96 -51.93 -0.41 0.36 16 36 H 0.41 1.37 9.10 45.56 0.41 1.79 16 37 H 0.05 0.71 7.64 -51.93 -0.40 0.31 16 38 H 0.10 1.39 6.27 -51.93 -0.33 1.06 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -32.81 307.44 -7.03 -39.84 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.01 Total: -2.09 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.22 Total: -7.14 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.24 Total: -35.54 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.17 Total: -16.44 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.81 -7.03 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700411663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.274 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds