Wall clock time and date at job start Mon Mar 30 2020 04:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.89117 * 2 1 4 4 C 1.54631 * 110.96802 * 123.81162 * 2 1 3 5 5 C 1.51280 * 104.19457 * 93.32149 * 4 2 1 6 6 O 1.21283 * 124.94316 * 196.27186 * 5 4 2 7 7 N 1.34417 * 110.11945 * 16.25161 * 5 4 2 8 8 C 1.46499 * 124.35563 * 180.38664 * 7 5 4 9 9 C 1.52998 * 109.47349 * 270.02479 * 8 7 5 10 10 C 1.53003 * 109.47158 * 179.97438 * 9 8 7 11 11 S 1.80998 * 109.46956 * 179.97438 * 10 9 8 12 12 C 1.76194 * 99.99948 * 180.02562 * 11 10 9 13 13 H 1.08008 * 120.00192 * 359.97438 * 12 11 10 14 14 C 1.38797 * 120.00313 * 180.02562 * 12 11 10 15 15 N 1.31630 * 119.99753 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00445 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46992 * 59.99979 * 16 14 12 18 18 H 1.48495 * 109.47413 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47129 * 300.00395 * 16 14 12 20 20 C 1.46766 * 111.29802 * 0.40799 * 7 5 4 21 21 H 1.09000 * 110.24445 * 101.98549 * 20 7 5 22 22 C 1.53002 * 110.24721 * 223.98124 * 20 7 5 23 23 H 1.08999 * 109.47292 * 183.81128 * 1 2 3 24 24 H 1.09007 * 109.46688 * 303.81289 * 1 2 3 25 25 H 1.09005 * 109.46812 * 63.80803 * 1 2 3 26 26 H 1.08997 * 110.48613 * 334.64071 * 4 2 1 27 27 H 1.09001 * 110.59766 * 212.05017 * 4 2 1 28 28 H 1.09009 * 109.46817 * 30.02561 * 8 7 5 29 29 H 1.09002 * 109.47433 * 150.02199 * 8 7 5 30 30 H 1.08993 * 109.46869 * 299.99942 * 9 8 7 31 31 H 1.09007 * 109.47099 * 59.99995 * 9 8 7 32 32 H 1.08997 * 109.47185 * 300.00047 * 10 9 8 33 33 H 1.09007 * 109.46622 * 60.00313 * 10 9 8 34 34 H 0.97002 * 120.00014 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.47053 * 58.54932 * 22 20 7 36 36 H 1.09002 * 109.47366 * 178.54641 * 22 20 7 37 37 H 1.08999 * 109.47152 * 298.55117 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0833 -0.8035 1.1997 5 6 2.2954 -2.1958 0.6475 6 8 2.4515 -3.1933 1.3195 7 7 2.2852 -2.1668 -0.6963 8 6 2.4548 -3.3452 -1.5500 9 6 3.9410 -3.5459 -1.8530 10 6 4.1181 -4.7770 -2.7441 11 16 5.8762 -5.0139 -3.1031 12 6 5.7906 -6.4541 -4.1146 13 1 4.8338 -6.9062 -4.3306 14 6 6.9527 -7.0082 -4.6331 15 7 8.1190 -6.4581 -4.3687 16 14 6.8619 -8.5346 -5.7060 17 1 6.0350 -8.2478 -6.9057 18 1 8.2308 -8.9243 -6.1294 19 1 6.2475 -9.6455 -4.9354 20 6 2.0828 -0.8027 -1.1985 21 1 3.0303 -0.3789 -1.5315 22 6 1.0707 -0.8056 -2.3459 23 1 -0.3634 -1.0254 0.0683 24 1 -0.3633 0.5719 0.8539 25 1 -0.3633 0.4536 -0.9222 26 1 1.3583 -0.8221 2.0133 27 1 3.0281 -0.3807 1.5414 28 1 2.0667 -4.2249 -1.0363 29 1 1.9102 -3.1995 -2.4829 30 1 4.3290 -2.6663 -2.3666 31 1 4.4856 -3.6917 -0.9201 32 1 3.7301 -5.6564 -2.2301 33 1 3.5735 -4.6315 -3.6771 34 1 8.9312 -6.8455 -4.7307 35 1 0.1264 -1.2230 -1.9963 36 1 0.9106 0.2156 -2.6918 37 1 1.4539 -1.4115 -3.1669 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701672968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:43 Heat of formation + Delta-G solvation = -56.807324 kcal Electronic energy + Delta-G solvation = -16954.334476 eV Core-core repulsion = 14243.001884 eV Total energy + Delta-G solvation = -2711.332592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78044 -37.04941 -35.08778 -32.42352 -31.91119 -30.92441 -27.95268 -25.88847 -25.24915 -24.34392 -21.56659 -20.55550 -19.01329 -17.50321 -16.97562 -16.16384 -15.51469 -14.99214 -14.78866 -14.32311 -14.16731 -13.97780 -13.90471 -13.29916 -13.12310 -12.57779 -12.30293 -12.18647 -12.00601 -11.76853 -11.64919 -11.40328 -11.10751 -11.03060 -11.01770 -10.82048 -10.67802 -10.39134 -9.77997 -9.61251 -9.03444 -8.63219 -8.28333 -6.51168 -6.20838 -3.91240 2.63242 2.96690 3.24156 3.25103 3.29406 3.62390 4.11586 4.18161 4.24228 4.45369 4.69763 4.99459 5.07097 5.09475 5.14900 5.18501 5.30839 5.35308 5.39165 5.48505 5.54650 5.59807 5.64831 5.69123 5.73372 5.81756 5.85161 6.00472 6.03040 6.32773 6.52043 6.60663 6.77056 7.18877 7.61949 8.22698 8.38173 9.25177 10.87359 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.043952 B = 0.003763 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.911326 B = 7438.365195 C = 7634.761361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.153 4.153 5 C 0.514 3.486 6 O -0.532 6.532 7 N -0.611 5.611 8 C 0.127 3.873 9 C -0.112 4.112 10 C -0.111 4.111 11 S -0.132 6.132 12 C -0.517 4.517 13 H 0.072 0.928 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.129 3.871 21 H 0.082 0.918 22 C -0.164 4.164 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.268 0.732 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 15.341 6.115 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.115 0.885 4 C -0.193 4.193 5 C 0.301 3.699 6 O -0.409 6.409 7 N -0.344 5.344 8 C 0.004 3.996 9 C -0.152 4.152 10 C -0.261 4.261 11 S 0.097 5.903 12 C -0.665 4.665 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.506 5.506 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C 0.026 3.974 21 H 0.100 0.900 22 C -0.221 4.221 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.057 15.331 6.715 21.857 hybrid contribution -0.937 -1.677 -1.172 2.250 sum -14.994 13.654 5.543 21.024 Atomic orbital electron populations 1.21882 0.93846 1.02255 1.02280 1.22191 0.96765 0.99456 0.93499 0.88541 1.22451 1.03873 0.93919 0.99050 1.20847 0.75751 0.90826 0.82439 1.90742 1.50000 1.37455 1.62707 1.48413 1.71396 1.08111 1.06523 1.21538 0.97289 0.86659 0.94094 1.21633 0.95105 0.98076 1.00343 1.23186 1.03396 0.98945 1.00529 1.84645 1.00936 1.38629 1.66123 1.22656 0.95815 1.12908 1.35144 0.90982 1.25014 0.94584 0.97833 0.96346 1.70017 0.97717 1.39696 1.43156 0.86218 0.77371 0.81752 0.80150 1.19938 1.20823 1.19915 1.21735 0.99072 0.82115 0.94509 0.90006 1.22180 0.99314 1.02722 0.97904 0.92425 0.92221 0.91543 0.88236 0.87847 0.90144 0.90290 0.91504 0.91254 0.91949 0.92074 0.92262 0.91541 0.91069 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 7.91 37.16 0.29 -0.59 16 2 C -0.10 -0.69 3.64 -88.99 -0.32 -1.02 16 3 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.15 -1.39 6.41 -26.74 -0.17 -1.56 16 5 C 0.51 7.19 8.02 -10.86 -0.09 7.10 16 6 O -0.53 -9.95 17.60 5.55 0.10 -9.85 16 7 N -0.61 -7.62 2.78 -164.88 -0.46 -8.08 16 8 C 0.13 1.78 5.71 -4.04 -0.02 1.76 16 9 C -0.11 -1.93 5.54 -26.73 -0.15 -2.07 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 S -0.13 -3.53 21.44 -107.50 -2.30 -5.83 16 12 C -0.52 -15.09 9.50 30.94 0.29 -14.80 16 13 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 14 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 16 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.13 1.15 3.82 -67.01 -0.26 0.89 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 22 C -0.16 -1.22 7.66 37.16 0.28 -0.94 16 23 H 0.06 0.44 7.84 -51.93 -0.41 0.03 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.34 6.76 -51.93 -0.35 -0.01 16 26 H 0.10 0.81 7.91 -51.93 -0.41 0.40 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.23 7.93 -51.92 -0.41 0.82 16 29 H 0.08 0.95 6.43 -51.93 -0.33 0.62 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 32 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.06 1.21 8.14 -51.91 -0.42 0.78 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.07 0.50 6.54 -51.93 -0.34 0.16 16 36 H 0.07 0.40 7.95 -51.93 -0.41 -0.01 16 37 H 0.06 0.55 6.95 -51.93 -0.36 0.19 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -34.19 314.86 -8.19 -42.38 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.95 Total: -3.13 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.02 Total: -11.35 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.27 Total: -33.74 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.10 Total: -9.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.19 -8.19 -42.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701672968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.427 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds