Wall clock time and date at job start Mon Mar 30 2020 04:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48496 * 109.46944 * 269.99272 * 3 2 1 5 5 H 1.48500 * 109.46844 * 29.99504 * 3 2 1 6 6 H 1.48497 * 109.46876 * 149.99832 * 3 2 1 7 7 C 1.37869 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00192 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00138 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47602 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47604 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47653 * 179.97438 * 11 10 9 13 13 C 1.46891 * 111.00348 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47087 * 180.02562 * 13 12 11 15 15 H 1.08995 * 110.27901 * 304.36149 * 14 13 12 16 16 C 1.54951 * 110.39210 * 182.21802 * 14 13 12 17 17 C 1.55312 * 100.94225 * 204.59612 * 16 14 13 18 18 H 1.08999 * 110.84840 * 275.94257 * 17 16 14 19 19 C 1.50700 * 110.84792 * 152.31864 * 17 16 14 20 20 O 1.20822 * 119.99906 * 5.72065 * 19 17 16 21 21 O 1.34224 * 119.99772 * 185.71483 * 19 17 16 22 22 C 1.54380 * 102.25056 * 34.13333 * 17 16 14 23 23 O 1.43245 * 107.59000 * 338.64209 * 22 17 16 24 24 H 0.96998 * 119.99851 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47823 * 59.99636 * 9 7 2 26 26 H 1.09007 * 109.46752 * 299.99698 * 9 7 2 27 27 H 1.09001 * 109.46964 * 59.99788 * 10 9 7 28 28 H 1.08994 * 109.46799 * 300.00002 * 10 9 7 29 29 H 1.09001 * 109.47009 * 59.99612 * 11 10 9 30 30 H 1.09002 * 109.47095 * 300.00647 * 11 10 9 31 31 H 1.00907 * 110.99495 * 56.04652 * 12 11 10 32 32 H 1.09000 * 109.47283 * 60.00330 * 13 12 11 33 33 H 1.08996 * 109.47380 * 300.00354 * 13 12 11 34 34 H 1.09000 * 111.12523 * 322.51641 * 16 14 13 35 35 H 1.09000 * 111.12500 * 86.63759 * 16 14 13 36 36 H 0.96703 * 116.99879 * 180.02562 * 21 19 17 37 37 H 1.08996 * 109.83192 * 219.13077 * 22 17 16 38 38 H 1.09002 * 109.83458 * 98.15431 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6366 0.0009 12 7 6.0412 -4.0215 0.0014 13 6 7.5096 -4.0607 0.0020 14 6 7.9809 -5.5163 0.0019 15 1 7.5480 -6.0536 0.8456 16 6 9.5280 -5.5829 0.0587 17 6 9.7870 -6.9730 -0.5837 18 1 9.6957 -7.7663 0.1582 19 6 11.1382 -7.0125 -1.2499 20 8 11.8924 -6.0748 -1.1424 21 8 11.5037 -8.0896 -1.9627 22 6 8.6557 -7.0663 -1.6300 23 8 7.6231 -6.1561 -1.2334 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8910 26 1 3.8751 -0.6804 -0.8889 27 1 3.6585 -3.1502 -0.8892 28 1 3.6579 -3.1505 0.8907 29 1 5.9149 -2.1228 0.8909 30 1 5.9148 -2.1226 -0.8890 31 1 5.6657 -4.5381 -0.7798 32 1 7.8862 -3.5566 0.8921 33 1 7.8869 -3.5569 -0.8879 34 1 9.9775 -4.7862 -0.5341 35 1 9.8849 -5.5525 1.0881 36 1 12.3800 -8.0690 -2.3712 37 1 8.2619 -8.0822 -1.6593 38 1 9.0367 -6.7877 -2.6125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713969990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:29 Heat of formation + Delta-G solvation = -152.663519 kcal Electronic energy + Delta-G solvation = -18574.584983 eV Core-core repulsion = 15416.342884 eV Total energy + Delta-G solvation = -3158.242099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.14621 -39.45211 -36.67479 -36.35211 -33.61633 -32.88676 -31.84402 -30.07792 -26.90709 -24.75099 -24.45340 -21.99071 -21.50243 -20.94340 -19.97715 -18.52844 -17.80430 -17.04398 -16.66374 -16.10248 -15.76962 -15.21567 -14.88191 -14.60142 -14.09632 -13.80241 -13.72749 -13.13880 -12.96670 -12.58809 -12.31499 -12.17007 -11.96447 -11.76803 -11.58367 -11.55881 -11.30114 -11.05360 -10.87470 -10.73359 -9.90641 -9.84668 -9.68010 -9.51949 -9.12341 -8.49241 -8.21680 -5.99567 -3.97048 1.62649 2.40348 3.33863 3.40374 3.40956 3.45171 3.69744 4.17397 4.34880 4.40714 4.49379 4.78509 4.81895 4.89015 5.07335 5.23649 5.27068 5.33326 5.34408 5.52165 5.58113 5.73598 5.80023 5.90856 5.95065 6.22478 6.57890 6.61792 6.66780 6.97052 7.23570 7.33089 7.40729 7.49196 7.64080 7.85286 8.60164 9.06307 9.63180 11.14066 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.055530 B = 0.002813 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.115292 B = 9951.909142 C =10218.165830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.056 3.944 12 N -0.689 5.689 13 C 0.060 3.940 14 C 0.083 3.917 15 H 0.088 0.912 16 C -0.135 4.135 17 C -0.121 4.121 18 H 0.127 0.873 19 C 0.491 3.509 20 O -0.508 6.508 21 O -0.514 6.514 22 C 0.069 3.931 23 O -0.370 6.370 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.009 0.991 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.347 0.653 32 H 0.084 0.916 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.413 0.587 37 H 0.084 0.916 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.331 -16.281 -1.925 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.073 4.073 12 N -0.320 5.320 13 C -0.070 4.070 14 C 0.026 3.974 15 H 0.106 0.894 16 C -0.173 4.173 17 C -0.140 4.140 18 H 0.144 0.856 19 C 0.333 3.667 20 O -0.395 6.395 21 O -0.326 6.326 22 C -0.008 4.008 23 O -0.290 6.290 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.165 0.835 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.272 0.728 37 H 0.102 0.898 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.753 -15.930 -1.141 28.623 hybrid contribution 1.438 1.107 -1.103 2.124 sum 25.192 -14.823 -2.244 29.315 Atomic orbital electron populations 1.69923 1.06290 1.26790 1.51452 1.25048 0.94744 0.99178 0.94690 0.86759 0.80358 0.83626 0.78416 1.20397 1.21438 1.19027 1.21164 0.89555 0.94465 1.50392 0.91000 1.19549 0.97141 0.92342 0.96082 1.21438 0.91057 0.99601 1.01635 1.22156 0.97728 0.87582 0.99788 1.60517 1.05878 1.15108 1.50491 1.22066 0.90067 0.93581 1.01237 1.23164 0.92192 0.94510 0.87567 0.89416 1.23312 0.96269 0.94799 1.02967 1.22635 0.89936 1.02076 0.99366 0.85565 1.23006 0.88848 0.79289 0.75589 1.90755 1.53616 1.36748 1.58368 1.84534 1.41426 1.43396 1.63262 1.22977 0.86318 0.95184 0.96309 1.88492 1.42095 1.57960 1.40444 0.92813 0.96627 0.97304 0.92989 0.91913 0.91544 0.95788 0.83486 0.89768 0.94719 0.88759 0.88603 0.72790 0.89760 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.51 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.03 5.41 -26.73 -0.14 -2.18 16 11 C 0.06 0.94 5.68 -3.83 -0.02 0.92 16 12 N -0.69 -10.02 6.50 -113.79 -0.74 -10.76 16 13 C 0.06 0.70 5.43 -3.83 -0.02 0.68 16 14 C 0.08 0.80 3.67 -25.70 -0.09 0.71 16 15 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.14 -1.06 5.65 -24.48 -0.14 -1.20 16 17 C -0.12 -0.81 3.50 -89.82 -0.31 -1.13 16 18 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 19 C 0.49 3.75 7.50 36.01 0.27 4.02 16 20 O -0.51 -5.52 16.52 -18.75 -0.31 -5.83 16 21 O -0.51 -2.67 13.41 -39.24 -0.53 -3.20 16 22 C 0.07 0.54 7.38 37.88 0.28 0.82 16 23 O -0.37 -4.04 10.66 -35.23 -0.38 -4.41 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 26 H 0.01 0.21 7.57 -51.92 -0.39 -0.18 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.35 5.10 8.38 -39.29 -0.33 4.77 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.87 7.39 -51.93 -0.38 0.48 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.41 0.52 9.10 45.56 0.41 0.93 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.55 7.81 -51.93 -0.41 0.15 16 LS Contribution 317.84 15.07 4.79 4.79 Total: -1.00 -34.42 317.84 -7.07 -41.49 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.28 Total: -0.39 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.73 Total: -11.48 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.03 Total: -38.48 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.21 Total: -13.44 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.42 -7.07 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713969990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.170 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds