Wall clock time and date at job start Mon Mar 30 2020 04:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48496 * 109.46944 * 269.99272 * 3 2 1 5 5 H 1.48500 * 109.46844 * 29.99504 * 3 2 1 6 6 H 1.48497 * 109.46876 * 149.99832 * 3 2 1 7 7 C 1.37869 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00192 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00138 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47602 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47604 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47653 * 179.97438 * 11 10 9 13 13 C 1.46891 * 111.00348 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47087 * 180.02562 * 13 12 11 15 15 H 1.08995 * 110.27901 * 304.36149 * 14 13 12 16 16 C 1.54951 * 110.39210 * 182.21802 * 14 13 12 17 17 C 1.55312 * 100.94225 * 204.59612 * 16 14 13 18 18 H 1.08999 * 110.84840 * 275.94257 * 17 16 14 19 19 C 1.50700 * 110.84792 * 152.31864 * 17 16 14 20 20 O 1.20822 * 119.99906 * 5.72065 * 19 17 16 21 21 O 1.34224 * 119.99772 * 185.71483 * 19 17 16 22 22 C 1.54380 * 102.25056 * 34.13333 * 17 16 14 23 23 O 1.43245 * 107.59000 * 338.64209 * 22 17 16 24 24 H 0.96998 * 119.99851 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47823 * 59.99636 * 9 7 2 26 26 H 1.09007 * 109.46752 * 299.99698 * 9 7 2 27 27 H 1.09001 * 109.46964 * 59.99788 * 10 9 7 28 28 H 1.08994 * 109.46799 * 300.00002 * 10 9 7 29 29 H 1.09001 * 109.47009 * 59.99612 * 11 10 9 30 30 H 1.09002 * 109.47095 * 300.00647 * 11 10 9 31 31 H 1.00907 * 110.99495 * 56.04652 * 12 11 10 32 32 H 1.09000 * 109.47283 * 60.00330 * 13 12 11 33 33 H 1.08996 * 109.47380 * 300.00354 * 13 12 11 34 34 H 1.09000 * 111.12523 * 322.51641 * 16 14 13 35 35 H 1.09000 * 111.12500 * 86.63759 * 16 14 13 36 36 H 0.96703 * 116.99879 * 180.02562 * 21 19 17 37 37 H 1.08996 * 109.83192 * 219.13077 * 22 17 16 38 38 H 1.09002 * 109.83458 * 98.15431 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6366 0.0009 12 7 6.0412 -4.0215 0.0014 13 6 7.5096 -4.0607 0.0020 14 6 7.9809 -5.5163 0.0019 15 1 7.5480 -6.0536 0.8456 16 6 9.5280 -5.5829 0.0587 17 6 9.7870 -6.9730 -0.5837 18 1 9.6957 -7.7663 0.1582 19 6 11.1382 -7.0125 -1.2499 20 8 11.8924 -6.0748 -1.1424 21 8 11.5037 -8.0896 -1.9627 22 6 8.6557 -7.0663 -1.6300 23 8 7.6231 -6.1561 -1.2334 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8910 26 1 3.8751 -0.6804 -0.8889 27 1 3.6585 -3.1502 -0.8892 28 1 3.6579 -3.1505 0.8907 29 1 5.9149 -2.1228 0.8909 30 1 5.9148 -2.1226 -0.8890 31 1 5.6657 -4.5381 -0.7798 32 1 7.8862 -3.5566 0.8921 33 1 7.8869 -3.5569 -0.8879 34 1 9.9775 -4.7862 -0.5341 35 1 9.8849 -5.5525 1.0881 36 1 12.3800 -8.0690 -2.3712 37 1 8.2619 -8.0822 -1.6593 38 1 9.0367 -6.7877 -2.6125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713969990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:29 Heat of formation + Delta-G solvation = -179.318670 kcal Electronic energy + Delta-G solvation = -18575.740837 eV Core-core repulsion = 15416.342884 eV Total energy + Delta-G solvation = -3159.397953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.74248 -40.12777 -37.64974 -37.20204 -35.44833 -33.64591 -33.50932 -31.25565 -28.45419 -25.70220 -25.30453 -23.54191 -22.39602 -21.67639 -21.48048 -19.08866 -18.89216 -18.43440 -17.66199 -17.04295 -16.48479 -16.31978 -16.18758 -15.72229 -15.40354 -15.17672 -14.71751 -14.37714 -14.12578 -13.84287 -13.47313 -13.30240 -13.03362 -12.73350 -12.62660 -12.44936 -12.41074 -12.33100 -12.10545 -11.79342 -11.68168 -11.48395 -11.41876 -11.22417 -10.75612 -10.53860 -9.36948 -8.28559 -6.32914 1.06254 1.36526 1.38744 1.51216 1.93677 2.37371 2.75549 3.06508 3.09763 3.21917 3.75591 3.91618 4.03891 4.13275 4.17296 4.27474 4.32292 4.42112 4.58448 4.68718 4.71599 4.73616 4.82196 4.88217 4.91282 4.98638 5.12484 5.13179 5.52204 5.52850 5.61880 5.67319 5.95012 6.10229 6.30714 6.45625 6.75401 6.89661 7.31580 8.88522 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.055530 B = 0.002813 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.115292 B = 9951.909142 C =10218.165830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.068 3.932 12 N -0.693 5.693 13 C 0.059 3.941 14 C 0.086 3.914 15 H 0.093 0.907 16 C -0.130 4.130 17 C -0.115 4.115 18 H 0.154 0.846 19 C 0.498 3.502 20 O -0.545 6.545 21 O -0.508 6.508 22 C 0.065 3.935 23 O -0.396 6.396 24 H 0.266 0.734 25 H 0.022 0.978 26 H 0.017 0.983 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.345 0.655 32 H 0.096 0.904 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.430 0.570 37 H 0.101 0.899 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.807 -16.338 -1.684 31.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.061 4.061 12 N -0.324 5.324 13 C -0.070 4.070 14 C 0.029 3.971 15 H 0.111 0.889 16 C -0.168 4.168 17 C -0.134 4.134 18 H 0.171 0.829 19 C 0.341 3.659 20 O -0.436 6.436 21 O -0.321 6.321 22 C -0.011 4.011 23 O -0.316 6.316 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.163 0.837 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.292 0.708 37 H 0.119 0.881 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 26.258 -16.033 -0.914 30.779 hybrid contribution 0.616 0.985 -1.225 1.689 sum 26.874 -15.047 -2.139 30.874 Atomic orbital electron populations 1.70082 1.08376 1.28185 1.52771 1.26091 0.95695 1.03754 0.94097 0.85582 0.79521 0.77876 0.79195 1.19193 1.20901 1.16783 1.21528 0.92306 0.93069 1.50308 0.95263 1.19497 0.93775 0.95034 0.96522 1.21265 0.94009 0.96910 1.00726 1.21907 0.94655 0.89142 1.00361 1.60477 1.07848 1.13565 1.50469 1.22174 0.87986 0.95354 1.01533 1.23114 0.93373 0.93123 0.87457 0.88884 1.23239 0.94644 0.95103 1.03861 1.22652 0.89043 1.02204 0.99478 0.82889 1.23107 0.88727 0.78989 0.75078 1.90749 1.54814 1.38137 1.59869 1.84497 1.42810 1.42166 1.62674 1.23108 0.86200 0.95413 0.96392 1.88464 1.43467 1.58724 1.40946 0.92496 0.95942 0.96430 0.93776 0.93077 0.90760 0.95386 0.83744 0.88623 0.95221 0.90310 0.86893 0.70756 0.88062 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.31 13.96 21.44 0.30 -61.01 16 2 C 0.00 0.00 5.47 84.65 0.46 0.46 16 3 Si 0.96 45.14 27.47 68.60 1.88 47.02 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 7 C -0.53 -31.94 9.66 25.60 0.25 -31.70 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 10 C -0.09 -3.70 5.41 30.59 0.17 -3.53 16 11 C 0.07 2.18 5.68 86.30 0.49 2.67 16 12 N -0.69 -19.25 6.50 -513.93 -3.34 -22.59 16 13 C 0.06 1.28 5.43 86.31 0.47 1.75 16 14 C 0.09 1.53 3.67 31.26 0.11 1.64 16 15 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 16 C -0.13 -1.80 5.65 32.06 0.18 -1.62 16 17 C -0.11 -1.27 3.50 -10.28 -0.04 -1.31 16 18 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 19 C 0.50 6.68 7.50 71.24 0.53 7.22 16 20 O -0.55 -11.27 16.52 21.98 0.36 -10.90 16 21 O -0.51 -4.13 13.41 -51.36 -0.69 -4.82 16 22 C 0.07 0.89 7.38 72.45 0.53 1.43 16 23 O -0.40 -8.10 10.66 -148.98 -1.59 -9.68 16 24 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 25 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 26 H 0.02 0.81 7.57 -2.38 -0.02 0.79 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.34 9.87 8.38 -89.69 -0.75 9.11 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 1.36 7.39 -2.39 -0.02 1.34 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.43 0.17 9.10 -74.05 -0.67 -0.50 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.96 7.81 -2.39 -0.02 0.94 16 Total: -1.00 -75.04 317.84 -0.21 -75.24 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -0.42 Total: 10.11 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 3.28 Total: -23.37 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -3.04 Total: -83.61 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -1.91 Total: -25.41 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -75.04 -0.21 -75.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713969990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.074 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds