Wall clock time and date at job start Mon Mar 30 2020 04:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47197 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.46891 * 111.00086 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47479 * 179.97438 * 13 12 11 15 15 H 1.09009 * 110.43393 * 54.29977 * 14 13 12 16 16 C 1.54807 * 110.48914 * 291.75569 * 14 13 12 17 17 C 1.55228 * 101.98623 * 220.51446 * 16 14 13 18 18 O 1.44373 * 103.56580 * 36.88094 * 17 16 14 19 19 C 1.43744 * 106.97831 * 320.01152 * 18 17 16 20 20 H 1.08997 * 109.88305 * 145.93700 * 19 18 17 21 21 C 1.50704 * 110.00258 * 267.02182 * 19 18 17 22 22 O 1.20822 * 119.99979 * 2.90263 * 21 19 18 23 23 O 1.34227 * 119.99942 * 182.90314 * 21 19 18 24 24 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 26 26 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 27 27 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 28 28 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 29 29 H 1.09002 * 109.46838 * 299.99316 * 11 10 9 30 30 H 1.09001 * 109.47142 * 59.99766 * 11 10 9 31 31 H 1.00899 * 111.00138 * 303.95393 * 12 11 10 32 32 H 1.09004 * 109.47317 * 300.00155 * 13 12 11 33 33 H 1.09005 * 109.47487 * 59.99955 * 13 12 11 34 34 H 1.08995 * 110.90948 * 338.63819 * 16 14 13 35 35 H 1.09005 * 110.90874 * 102.24250 * 16 14 13 36 36 H 1.09004 * 110.52039 * 278.37891 * 17 16 14 37 37 H 1.09007 * 110.77514 * 155.50362 * 17 16 14 38 38 H 0.96705 * 116.99878 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 1.7347 -7.3949 0.0018 14 6 2.7596 -8.5309 0.0018 15 1 3.4572 -8.4142 0.8314 16 6 3.5217 -8.5732 -1.3450 17 6 3.6133 -10.0989 -1.6158 18 8 2.3502 -10.6049 -1.1332 19 6 2.0508 -9.8969 0.0814 20 1 0.9742 -9.7512 0.1698 21 6 2.5622 -10.6712 1.2689 22 8 3.1742 -11.6994 1.1015 23 8 2.3377 -10.2186 2.5124 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8896 27 1 2.8727 -3.6047 -0.8877 28 1 2.8713 -3.6038 0.8923 29 1 0.8528 -5.0447 0.8906 30 1 0.8546 -5.0450 -0.8895 31 1 3.0704 -6.0365 -0.7791 32 1 1.1095 -7.4692 0.8916 33 1 1.1101 -7.4696 -0.8884 34 1 2.9537 -8.0727 -2.1292 35 1 4.5141 -8.1337 -1.2445 36 1 4.4408 -10.5371 -1.0578 37 1 3.7238 -10.2964 -2.6821 38 1 2.6847 -10.7497 3.2422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716173341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:40 Heat of formation + Delta-G solvation = -159.238508 kcal Electronic energy + Delta-G solvation = -18899.669884 eV Core-core repulsion = 15741.142672 eV Total energy + Delta-G solvation = -3158.527212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17007 -39.24248 -36.81289 -36.28969 -34.25508 -32.72147 -30.75373 -30.33335 -26.89440 -24.90998 -23.55294 -22.44446 -21.51845 -21.06243 -20.31803 -18.57490 -17.47031 -16.77590 -16.66742 -16.37638 -15.78220 -15.61728 -14.51057 -14.25754 -14.16988 -13.71161 -13.60317 -13.23817 -13.04539 -12.79717 -12.22766 -12.03442 -11.78955 -11.66530 -11.45216 -11.39056 -11.13595 -11.02023 -10.74203 -10.62798 -10.13313 -10.10761 -9.85932 -9.73526 -8.53311 -8.35646 -8.31188 -6.35275 -4.04030 1.79659 2.51130 3.39971 3.44461 3.46554 3.65278 3.90347 4.22611 4.30658 4.55771 4.69000 4.73648 4.80880 4.90830 5.07599 5.20390 5.36333 5.40409 5.42200 5.52020 5.60186 5.67230 5.75061 5.81238 6.12458 6.16217 6.26300 6.54168 6.57823 6.95193 7.14490 7.42094 7.44627 7.54118 7.56254 8.23744 8.47795 8.89907 9.68295 11.05462 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.043632 B = 0.003020 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.575162 B = 9270.189539 C = 9502.674656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.601 4.601 8 H 0.048 0.952 9 C 0.009 3.991 10 C -0.100 4.100 11 C 0.058 3.942 12 N -0.689 5.689 13 C 0.067 3.933 14 C -0.106 4.106 15 H 0.101 0.899 16 C -0.154 4.154 17 C 0.041 3.959 18 O -0.341 6.341 19 C 0.092 3.908 20 H 0.135 0.865 21 C 0.461 3.539 22 O -0.506 6.506 23 O -0.510 6.510 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.005 0.995 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.338 0.662 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.510 -21.027 -0.103 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.640 4.640 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.138 4.138 11 C -0.070 4.070 12 N -0.320 5.320 13 C -0.062 4.062 14 C -0.125 4.125 15 H 0.119 0.881 16 C -0.191 4.191 17 C -0.036 4.036 18 O -0.258 6.258 19 C 0.031 3.969 20 H 0.153 0.847 21 C 0.302 3.698 22 O -0.393 6.393 23 O -0.322 6.322 24 H 0.078 0.922 25 H 0.025 0.975 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.156 0.844 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.281 -19.587 0.106 20.287 hybrid contribution 0.254 -2.050 -0.273 2.084 sum 5.535 -21.638 -0.167 22.335 Atomic orbital electron populations 1.70786 1.06897 1.30549 1.46843 1.25869 0.96569 1.02781 0.93823 0.83544 0.74880 0.75329 0.76513 1.21480 1.21415 1.20788 1.22061 0.94309 0.92053 1.55530 0.93322 1.19194 0.94654 0.93188 0.95846 1.21493 0.98921 0.92426 1.00989 1.22150 0.94116 0.90738 1.00008 1.60509 1.20405 1.01130 1.49953 1.21968 0.94491 0.88451 1.01300 1.22522 0.98257 0.91970 0.99764 0.88106 1.23350 1.02105 0.96898 0.96785 1.23788 0.86398 0.92524 1.00852 1.89017 1.38665 1.62693 1.35466 1.22306 1.02381 0.90006 0.82159 0.84733 1.24199 0.76712 0.84132 0.84769 1.90725 1.37917 1.24262 1.86368 1.84557 1.74767 1.56164 1.16708 0.92156 0.97455 0.97716 0.93490 0.92321 0.91337 0.95685 0.84435 0.90214 0.94650 0.89779 0.89026 0.91523 0.87966 0.72954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.27 13.65 55.43 0.76 -27.51 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.60 -17.32 9.11 -34.44 -0.31 -17.64 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 10 C -0.10 -2.05 5.41 -26.73 -0.14 -2.19 16 11 C 0.06 0.96 5.69 -3.82 -0.02 0.94 16 12 N -0.69 -9.13 6.50 -113.78 -0.74 -9.87 16 13 C 0.07 0.71 4.85 -3.83 -0.02 0.70 16 14 C -0.11 -0.97 2.90 -89.09 -0.26 -1.22 16 15 H 0.10 0.98 7.69 -51.92 -0.40 0.58 16 16 C -0.15 -1.23 5.97 -24.60 -0.15 -1.38 16 17 C 0.04 0.35 7.63 38.34 0.29 0.64 16 18 O -0.34 -3.74 10.76 -54.78 -0.59 -4.33 16 19 C 0.09 0.87 3.66 -27.31 -0.10 0.77 16 20 H 0.14 1.06 7.69 -51.93 -0.40 0.66 16 21 C 0.46 4.76 7.37 36.01 0.27 5.03 16 22 O -0.51 -6.78 17.25 -25.36 -0.44 -7.22 16 23 O -0.51 -4.07 13.42 -39.25 -0.53 -4.60 16 24 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 25 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 26 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.34 4.14 8.01 -39.29 -0.31 3.83 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.37 8.04 -51.93 -0.42 -0.05 16 34 H 0.08 0.67 7.80 -51.93 -0.41 0.26 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.41 1.59 9.10 45.56 0.41 2.00 16 LS Contribution 319.61 15.07 4.82 4.82 Total: -1.00 -34.38 319.61 -7.70 -42.07 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.23 Total: 0.27 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -0.66 Total: -13.97 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.02 Total: -37.39 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.55 Total: -16.15 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.38 -7.70 -42.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716173341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.164 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds