Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81396 * 102.99692 * 2 1 4 4 C 1.53004 * 109.47190 * 185.00321 * 3 2 1 5 5 C 1.52996 * 109.47046 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47708 * 59.99775 * 5 4 3 7 7 C 1.50706 * 109.47274 * 59.99852 * 6 5 4 8 8 O 1.21281 * 119.99699 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00080 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47148 * 179.72251 * 10 9 7 12 12 H 1.08002 * 120.00318 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99824 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99920 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47212 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46550 * 120.00565 * 15 13 11 18 18 H 1.48492 * 109.47285 * 240.00185 * 15 13 11 19 19 C 1.53004 * 109.47051 * 300.00222 * 6 5 4 20 20 C 1.52991 * 109.47294 * 59.99606 * 19 6 5 21 21 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47016 * 299.99790 * 1 2 3 23 23 H 1.08991 * 109.47260 * 60.00220 * 1 2 3 24 24 H 1.09002 * 109.47193 * 305.00056 * 3 2 1 25 25 H 1.08991 * 109.47195 * 59.99918 * 4 3 2 26 26 H 1.09002 * 109.46837 * 299.99954 * 4 3 2 27 27 H 1.09002 * 109.47415 * 299.99227 * 5 4 3 28 28 H 1.09004 * 109.46998 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47794 * 180.02562 * 6 5 4 30 30 H 0.97005 * 120.00161 * 359.72088 * 9 7 6 31 31 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 32 32 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 33 33 H 0.97005 * 119.99648 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47281 * 179.97438 * 19 6 5 35 35 H 1.09002 * 109.46837 * 299.99794 * 19 6 5 36 36 H 1.09004 * 109.47246 * 179.97438 * 20 19 6 37 37 H 1.09002 * 109.47025 * 60.00303 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7370 1.9413 -0.1258 5 6 4.0811 3.4320 -0.1252 6 6 3.6019 4.0656 1.1824 7 6 4.2831 3.3924 2.3460 8 8 5.0742 2.4946 2.1488 9 7 4.0130 3.7880 3.6058 10 6 4.6756 3.1339 4.7369 11 6 4.2082 3.7620 6.0245 12 1 3.4898 4.5682 6.0026 13 6 4.6978 3.3076 7.2307 14 7 5.5729 2.3263 7.2575 15 14 4.1189 4.0867 8.8268 16 1 3.1406 5.1627 8.5261 17 1 3.4728 3.0538 9.6759 18 1 5.2828 4.6624 9.5472 19 6 2.0870 3.8918 1.3082 20 6 1.7429 2.4011 1.3076 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 1.7294 2.2541 -0.8418 25 1 4.0784 1.4896 -1.0571 26 1 4.2296 1.4547 0.7160 27 1 3.5885 3.9190 -0.9668 28 1 5.1603 3.5558 -0.2152 29 1 3.8467 5.1277 1.1827 30 1 3.3833 4.5088 3.7633 31 1 4.4272 2.0726 4.7392 32 1 5.7550 3.2541 4.6447 33 1 5.9176 2.0069 8.1061 34 1 1.7457 4.3428 2.2400 35 1 1.5944 4.3788 0.4666 36 1 0.6636 2.2773 1.3977 37 1 2.2355 1.9142 2.1492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720478215.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -67.060622 kcal Electronic energy + Delta-G solvation = -17588.434195 eV Core-core repulsion = 14876.656987 eV Total energy + Delta-G solvation = -2711.777208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94150 -36.80826 -34.20973 -32.43967 -31.12302 -30.69866 -28.82824 -27.20434 -23.78294 -22.63339 -22.15875 -20.64485 -19.03347 -16.74431 -16.54593 -15.71895 -15.51901 -15.11076 -14.41543 -14.33170 -13.99742 -13.81291 -13.62427 -13.30400 -13.04580 -12.66761 -12.20458 -12.07178 -12.00959 -11.77190 -11.57070 -11.07685 -10.97728 -10.92587 -10.74281 -10.42566 -10.28637 -10.11899 -9.64110 -9.36406 -8.79906 -8.70825 -7.83354 -7.63814 -6.15917 -4.22661 1.71724 2.62163 3.23406 3.30525 3.33363 3.40888 4.10714 4.37537 4.63574 4.75138 4.98745 5.04563 5.07640 5.11232 5.19486 5.20552 5.41374 5.42709 5.54385 5.55730 5.63534 5.77493 5.93562 5.99805 6.07667 6.23968 6.31538 6.32547 6.70766 7.33582 7.48805 7.54221 7.68153 7.98687 8.66059 8.80126 9.14727 9.44297 10.94314 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.025788 B = 0.005007 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.515277 B = 5591.014097 C = 5965.340955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.267 6.267 3 C -0.042 4.042 4 C -0.115 4.115 5 C -0.087 4.087 6 C -0.114 4.114 7 C 0.504 3.496 8 O -0.550 6.550 9 N -0.712 5.712 10 C 0.250 3.750 11 C -0.542 4.542 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.902 3.098 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.105 4.105 20 C -0.118 4.118 21 H 0.097 0.903 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.389 0.611 31 H 0.026 0.974 32 H 0.025 0.975 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 2.466 -14.844 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.171 4.171 4 C -0.153 4.153 5 C -0.127 4.127 6 C -0.136 4.136 7 C 0.289 3.711 8 O -0.430 6.430 9 N -0.360 5.360 10 C 0.129 3.871 11 C -0.580 4.580 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.144 4.144 20 C -0.157 4.157 21 H 0.116 0.884 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.221 0.779 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.702 0.759 -14.837 17.217 hybrid contribution -1.478 1.747 1.055 2.520 sum -10.180 2.506 -13.781 17.316 Atomic orbital electron populations 1.23361 0.95041 1.06113 1.04620 1.87015 1.06433 1.12464 1.97863 1.23202 1.01112 0.92335 1.00423 1.21640 0.91638 0.97339 1.04698 1.21250 1.01608 0.94832 0.94994 1.21415 0.96016 1.01006 0.95123 1.20350 0.82582 0.83830 0.84384 1.90583 1.36313 1.30989 1.85066 1.46478 1.45103 1.37908 1.06494 1.19087 0.93083 0.93345 0.81604 1.21260 1.26557 1.19514 0.90708 0.91951 1.24950 0.94784 0.94900 0.99369 1.69987 1.29429 1.26271 1.26551 0.86385 0.78575 0.79135 0.82953 1.19669 1.20805 1.20806 1.21515 0.94061 0.96286 1.02564 1.21902 1.00688 0.95784 0.97368 0.88433 0.90482 0.90921 0.90163 0.91763 0.87399 0.91964 0.90787 0.88906 0.77883 0.95563 0.95652 0.92520 0.90864 0.91290 0.92007 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.45 101.05 1.06 -0.15 16 2 S -0.27 -3.65 21.79 -107.50 -2.34 -6.00 16 3 C -0.04 -0.54 2.65 -26.73 -0.07 -0.61 16 4 C -0.11 -1.65 4.92 -26.73 -0.13 -1.78 16 5 C -0.09 -1.12 5.09 -26.74 -0.14 -1.26 16 6 C -0.11 -1.55 3.01 -91.77 -0.28 -1.83 16 7 C 0.50 9.66 5.64 -10.98 -0.06 9.60 16 8 O -0.55 -12.68 13.66 5.56 0.08 -12.60 16 9 N -0.71 -14.66 5.44 -61.47 -0.33 -14.99 16 10 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 11 C -0.54 -14.64 9.28 -34.44 -0.32 -14.96 16 12 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.88 -26.15 13.29 55.43 0.74 -25.41 16 15 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.10 -1.21 5.36 -26.73 -0.14 -1.36 16 20 C -0.12 -1.55 4.89 -26.73 -0.13 -1.68 16 21 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 22 H 0.08 0.74 7.14 -51.93 -0.37 0.37 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.11 1.99 5.51 -51.93 -0.29 1.71 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.39 6.91 7.75 -40.82 -0.32 6.59 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.07 0.83 7.57 -51.93 -0.39 0.44 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.71 6.92 -51.93 -0.36 0.35 16 37 H 0.08 1.39 7.22 -51.93 -0.37 1.02 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -31.26 306.59 -8.46 -39.72 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.86 Total: 4.67 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.34 Total: -5.82 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.40 Total: -40.41 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.34 Total: -6.00 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.26 -8.46 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720478215.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.340 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds