Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81396 * 102.99692 * 2 1 4 4 C 1.53004 * 109.47190 * 185.00321 * 3 2 1 5 5 C 1.52996 * 109.47046 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47708 * 59.99775 * 5 4 3 7 7 C 1.50706 * 109.47274 * 59.99852 * 6 5 4 8 8 O 1.21281 * 119.99699 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00080 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47148 * 179.72251 * 10 9 7 12 12 H 1.08002 * 120.00318 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99824 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99920 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47212 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46550 * 120.00565 * 15 13 11 18 18 H 1.48492 * 109.47285 * 240.00185 * 15 13 11 19 19 C 1.53004 * 109.47051 * 300.00222 * 6 5 4 20 20 C 1.52991 * 109.47294 * 59.99606 * 19 6 5 21 21 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47016 * 299.99790 * 1 2 3 23 23 H 1.08991 * 109.47260 * 60.00220 * 1 2 3 24 24 H 1.09002 * 109.47193 * 305.00056 * 3 2 1 25 25 H 1.08991 * 109.47195 * 59.99918 * 4 3 2 26 26 H 1.09002 * 109.46837 * 299.99954 * 4 3 2 27 27 H 1.09002 * 109.47415 * 299.99227 * 5 4 3 28 28 H 1.09004 * 109.46998 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47794 * 180.02562 * 6 5 4 30 30 H 0.97005 * 120.00161 * 359.72088 * 9 7 6 31 31 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 32 32 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 33 33 H 0.97005 * 119.99648 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47281 * 179.97438 * 19 6 5 35 35 H 1.09002 * 109.46837 * 299.99794 * 19 6 5 36 36 H 1.09004 * 109.47246 * 179.97438 * 20 19 6 37 37 H 1.09002 * 109.47025 * 60.00303 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7370 1.9413 -0.1258 5 6 4.0811 3.4320 -0.1252 6 6 3.6019 4.0656 1.1824 7 6 4.2831 3.3924 2.3460 8 8 5.0742 2.4946 2.1488 9 7 4.0130 3.7880 3.6058 10 6 4.6756 3.1339 4.7369 11 6 4.2082 3.7620 6.0245 12 1 3.4898 4.5682 6.0026 13 6 4.6978 3.3076 7.2307 14 7 5.5729 2.3263 7.2575 15 14 4.1189 4.0867 8.8268 16 1 3.1406 5.1627 8.5261 17 1 3.4728 3.0538 9.6759 18 1 5.2828 4.6624 9.5472 19 6 2.0870 3.8918 1.3082 20 6 1.7429 2.4011 1.3076 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 1.7294 2.2541 -0.8418 25 1 4.0784 1.4896 -1.0571 26 1 4.2296 1.4547 0.7160 27 1 3.5885 3.9190 -0.9668 28 1 5.1603 3.5558 -0.2152 29 1 3.8467 5.1277 1.1827 30 1 3.3833 4.5088 3.7633 31 1 4.4272 2.0726 4.7392 32 1 5.7550 3.2541 4.6447 33 1 5.9176 2.0069 8.1061 34 1 1.7457 4.3428 2.2400 35 1 1.5944 4.3788 0.4666 36 1 0.6636 2.2773 1.3977 37 1 2.2355 1.9142 2.1492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720478215.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -87.952172 kcal Electronic energy + Delta-G solvation = -17589.340120 eV Core-core repulsion = 14876.656987 eV Total energy + Delta-G solvation = -2712.683134 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.32941 -38.17519 -36.11520 -34.40381 -32.29782 -31.79646 -29.63085 -29.18907 -25.41918 -23.87104 -23.52343 -22.03086 -20.58003 -18.55711 -17.63417 -17.23375 -17.05763 -16.75012 -16.02205 -15.57758 -15.18082 -15.09801 -14.73349 -14.34686 -14.29939 -14.01803 -13.81054 -13.67758 -13.20967 -13.04766 -12.84570 -12.78711 -12.68791 -12.24349 -12.09402 -11.92712 -11.48697 -11.44603 -11.14653 -10.81087 -10.64808 -10.35241 -9.73806 -8.70548 -8.29354 -6.46034 0.77401 1.42257 1.43598 1.56999 1.71299 1.87931 2.33240 2.66861 3.05686 3.60479 3.68995 3.92405 3.98268 4.14746 4.31135 4.33206 4.35703 4.39826 4.47719 4.59042 4.75343 4.87104 4.91955 5.02772 5.04349 5.12821 5.20098 5.25249 5.27374 5.30731 5.46271 5.58660 5.75636 5.87355 6.66428 6.98631 7.24204 7.59367 8.83210 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.025788 B = 0.005007 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.515277 B = 5591.014097 C = 5965.340955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 S -0.347 6.347 3 C -0.025 4.025 4 C -0.115 4.115 5 C -0.085 4.085 6 C -0.103 4.103 7 C 0.497 3.503 8 O -0.596 6.596 9 N -0.708 5.708 10 C 0.269 3.731 11 C -0.553 4.553 12 H 0.084 0.916 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.985 3.015 16 H -0.251 1.251 17 H -0.280 1.280 18 H -0.279 1.279 19 C -0.099 4.099 20 C -0.117 4.117 21 H 0.106 0.894 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.126 0.874 30 H 0.406 0.594 31 H -0.019 1.019 32 H -0.017 1.017 33 H 0.268 0.732 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 5.350 -15.886 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 S -0.119 6.119 3 C -0.153 4.153 4 C -0.154 4.154 5 C -0.124 4.124 6 C -0.124 4.124 7 C 0.285 3.715 8 O -0.478 6.478 9 N -0.358 5.358 10 C 0.146 3.854 11 C -0.590 4.590 12 H 0.102 0.898 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.808 3.192 16 H -0.174 1.174 17 H -0.206 1.206 18 H -0.205 1.205 19 C -0.138 4.138 20 C -0.157 4.157 21 H 0.125 0.875 22 H 0.099 0.901 23 H 0.114 0.886 24 H 0.133 0.867 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.241 0.759 31 H -0.001 1.001 32 H 0.001 0.999 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.713 3.677 -15.912 20.098 hybrid contribution -0.522 0.751 1.314 1.601 sum -12.235 4.428 -14.598 19.555 Atomic orbital electron populations 1.23387 0.90647 1.07210 1.05887 1.87346 1.11407 1.15081 1.98032 1.23144 0.99848 0.90938 1.01347 1.21543 0.92800 0.98375 1.02648 1.21310 1.01324 0.93727 0.96049 1.21498 0.96981 1.01908 0.92003 1.21579 0.81739 0.83024 0.85170 1.90583 1.38395 1.33047 1.85748 1.46209 1.45420 1.38309 1.05859 1.18457 0.91136 0.91541 0.84308 1.21651 1.26758 1.19853 0.90785 0.89776 1.26088 0.94600 0.95217 1.03809 1.70159 1.31069 1.28160 1.27787 0.85114 0.78354 0.78438 0.77328 1.17424 1.20569 1.20458 1.21589 0.92231 0.95101 1.04924 1.21872 1.01377 0.96772 0.95633 0.87530 0.90052 0.88616 0.86745 0.91337 0.92540 0.87342 0.92278 0.85573 0.75854 1.00142 0.99883 0.92331 0.90257 0.86709 0.89942 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 10.45 113.37 1.19 -0.62 16 2 S -0.35 -9.51 21.79 -56.49 -1.23 -10.74 16 3 C -0.02 -0.59 2.65 30.60 0.08 -0.51 16 4 C -0.12 -3.29 4.92 30.59 0.15 -3.14 16 5 C -0.08 -1.97 5.09 30.59 0.16 -1.82 16 6 C -0.10 -2.53 3.01 -11.54 -0.03 -2.57 16 7 C 0.50 19.53 5.64 87.66 0.49 20.02 16 8 O -0.60 -29.46 13.66 -3.03 -0.04 -29.50 16 9 N -0.71 -29.89 5.44 -466.78 -2.54 -32.42 16 10 C 0.27 15.02 5.43 85.63 0.46 15.49 16 11 C -0.55 -30.32 9.28 25.60 0.24 -30.09 16 12 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 13 C 0.00 0.12 5.46 84.66 0.46 0.58 16 14 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 15 Si 0.98 42.61 29.54 68.60 2.03 44.64 16 16 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 19 C -0.10 -1.90 5.36 30.59 0.16 -1.74 16 20 C -0.12 -2.88 4.89 30.59 0.15 -2.73 16 21 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.08 1.36 7.14 -2.39 -0.02 1.34 16 23 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 2.24 5.51 -2.39 -0.01 2.23 16 27 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 29 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.41 14.05 7.75 -92.70 -0.72 13.33 16 31 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 32 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 33 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 34 H 0.08 1.47 7.57 -2.39 -0.02 1.46 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.67 6.92 -2.39 -0.02 1.65 16 37 H 0.03 1.10 7.22 -2.39 -0.02 1.08 16 Total: -1.00 -75.27 306.59 2.34 -72.92 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.33 Total: 19.25 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 3.51 Total: -7.11 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -2.25 Total: -89.45 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.04 Total: -29.50 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -9.51 SS G_CDS: -1.23 Total: -10.74 kcal Total: -75.27 2.34 -72.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720478215.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.029 kcal (2) G-P(sol) polarization free energy of solvation -75.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds