Wall clock time and date at job start Mon Mar 30 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81391 * 103.00067 * 2 1 4 4 C 1.53004 * 109.47451 * 184.99614 * 3 2 1 5 5 C 1.52997 * 109.47530 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46991 * 59.99990 * 5 4 3 7 7 C 1.53006 * 109.46626 * 60.00378 * 6 5 4 8 8 N 1.46498 * 109.46726 * 174.99859 * 7 6 5 9 9 C 1.34779 * 120.00066 * 179.97438 * 8 7 6 10 10 O 1.21692 * 119.99530 * 0.02562 * 9 8 7 11 11 C 1.46372 * 120.00215 * 179.97438 * 9 8 7 12 12 H 1.07999 * 120.00203 * 0.02562 * 11 9 8 13 13 C 1.40053 * 119.99821 * 179.97438 * 11 9 8 14 14 N 1.30672 * 120.00003 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99876 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46992 * 60.00224 * 15 13 11 17 17 H 1.48496 * 109.47246 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47130 * 300.00390 * 15 13 11 19 19 C 1.52997 * 109.47592 * 300.00342 * 6 5 4 20 20 C 1.53002 * 109.46978 * 59.99580 * 19 6 5 21 21 H 1.08998 * 109.46845 * 299.99590 * 1 2 3 22 22 H 1.08995 * 109.47282 * 60.00000 * 1 2 3 23 23 H 1.09005 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47262 * 305.00177 * 3 2 1 25 25 H 1.09001 * 109.46322 * 60.00120 * 4 3 2 26 26 H 1.09002 * 109.47347 * 300.00510 * 4 3 2 27 27 H 1.09002 * 109.47153 * 300.00544 * 5 4 3 28 28 H 1.08993 * 109.47194 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.47160 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 31 31 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 32 32 H 0.96998 * 120.00310 * 359.97438 * 8 7 6 33 33 H 0.97005 * 119.99737 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47375 * 179.97438 * 19 6 5 35 35 H 1.09002 * 109.46777 * 300.00227 * 19 6 5 36 36 H 1.09004 * 109.47006 * 180.02562 * 20 19 6 37 37 H 1.09002 * 109.47097 * 60.00199 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7370 1.9412 -0.1256 5 6 4.0812 3.4319 -0.1250 6 6 3.6020 4.0654 1.1826 7 6 4.2935 3.3817 2.3639 8 7 3.9268 4.0654 3.6066 9 6 4.4205 3.6339 4.7842 10 8 5.1713 2.6766 4.8149 11 6 4.0546 4.3173 6.0257 12 1 3.3887 5.1670 5.9984 13 6 4.5673 3.8685 7.2494 14 7 5.3726 2.8400 7.2825 15 14 4.0997 4.7401 8.8340 16 1 2.6274 4.6778 9.0173 17 1 4.7704 4.0763 9.9806 18 1 4.5301 6.1596 8.7636 19 6 2.0871 3.8917 1.3084 20 6 1.7429 2.4009 1.3077 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7294 2.2541 -0.8418 25 1 4.0783 1.4894 -1.0570 26 1 4.2296 1.4545 0.7162 27 1 3.5886 3.9189 -0.9666 28 1 5.1604 3.5556 -0.2149 29 1 3.8468 5.1276 1.1829 30 1 3.9783 2.3396 2.4158 31 1 5.3741 3.4283 2.2289 32 1 3.3287 4.8286 3.5820 33 1 5.7280 2.5294 8.1300 34 1 1.7457 4.3427 2.2402 35 1 1.5945 4.3787 0.4668 36 1 0.6636 2.2772 1.3968 37 1 2.2355 1.9139 2.1492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720522034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:07 Heat of formation + Delta-G solvation = -67.996083 kcal Electronic energy + Delta-G solvation = -17475.445049 eV Core-core repulsion = 14763.627277 eV Total energy + Delta-G solvation = -2711.817773 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.20265 -36.82277 -33.30958 -32.28456 -31.04458 -30.35615 -28.86975 -26.76878 -24.64602 -22.61017 -22.17075 -19.72089 -18.59978 -17.03580 -16.52618 -15.62810 -15.25456 -14.70104 -14.38017 -14.34715 -13.84866 -13.69921 -13.48202 -13.14714 -12.93324 -12.56469 -12.22986 -12.05455 -11.90827 -11.62011 -11.19482 -11.03993 -11.02554 -10.71023 -10.50123 -10.41468 -10.23688 -10.05020 -10.01551 -9.58880 -8.80495 -7.69036 -7.55666 -7.40027 -6.13901 -4.59488 1.67064 2.56461 3.17767 3.22593 3.24452 4.13776 4.60459 4.64024 4.66559 4.88525 5.01241 5.03527 5.06514 5.13922 5.27373 5.37801 5.48862 5.52377 5.56290 5.62061 5.82133 5.87059 5.98260 6.01670 6.09565 6.18438 6.24736 6.36037 6.43171 6.64282 6.78391 7.46925 7.98744 8.17419 8.37819 9.06699 9.60540 10.65453 10.84840 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.004762 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.805608 B = 5878.855272 C = 6191.606845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.272 6.272 3 C -0.042 4.042 4 C -0.104 4.104 5 C -0.103 4.103 6 C -0.101 4.101 7 C 0.135 3.865 8 N -0.767 5.767 9 C 0.554 3.446 10 O -0.581 6.581 11 C -0.547 4.547 12 H 0.065 0.935 13 C 0.088 3.912 14 N -0.769 5.769 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.269 1.269 19 C -0.107 4.107 20 C -0.118 4.118 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.097 0.903 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.378 0.622 33 H 0.268 0.732 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 0.742 -14.770 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.043 6.043 3 C -0.171 4.171 4 C -0.143 4.143 5 C -0.142 4.142 6 C -0.120 4.120 7 C 0.010 3.990 8 N -0.422 5.422 9 C 0.358 3.642 10 O -0.464 6.464 11 C -0.584 4.584 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.397 5.397 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.146 4.146 20 C -0.157 4.157 21 H 0.096 0.904 22 H 0.091 0.909 23 H 0.116 0.884 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.209 0.791 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.526 -1.054 -14.660 16.512 hybrid contribution -1.453 1.804 0.749 2.435 sum -8.979 0.750 -13.910 16.573 Atomic orbital electron populations 1.23353 0.94672 1.06144 1.04746 1.86926 1.06951 1.12509 1.97905 1.23195 1.00447 0.92332 1.01080 1.21418 0.92262 0.97364 1.03239 1.21481 1.01301 0.94412 0.97043 1.21398 0.95286 1.00212 0.95071 1.21026 0.97748 0.96360 0.83902 1.46127 1.54281 1.35851 1.05973 1.18190 0.80047 0.83805 0.82162 1.90601 1.39283 1.30084 1.86440 1.20854 1.31140 1.16150 0.90304 0.91628 1.25694 0.93354 0.94044 1.00051 1.70017 1.23261 1.19960 1.26503 0.86466 0.79321 0.80050 0.81072 1.19348 1.20580 1.19344 1.21526 0.95689 0.95554 1.01867 1.21917 1.00468 0.96430 0.96867 0.90361 0.90880 0.88410 0.89988 0.91346 0.90097 0.91941 0.91136 0.90765 0.92677 0.93728 0.79088 0.92119 0.91012 0.92485 0.92404 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.45 101.05 1.06 -0.10 16 2 S -0.27 -3.50 21.79 -107.50 -2.34 -5.85 16 3 C -0.04 -0.50 2.65 -26.73 -0.07 -0.57 16 4 C -0.10 -1.29 4.94 -26.73 -0.13 -1.42 16 5 C -0.10 -1.18 5.45 -26.73 -0.15 -1.33 16 6 C -0.10 -1.37 2.70 -90.62 -0.24 -1.61 16 7 C 0.13 2.55 4.36 -4.04 -0.02 2.53 16 8 N -0.77 -17.01 5.28 -61.72 -0.33 -17.34 16 9 C 0.55 15.93 7.75 -12.99 -0.10 15.83 16 10 O -0.58 -19.14 15.02 5.20 0.08 -19.06 16 11 C -0.55 -15.60 9.54 -35.63 -0.34 -15.94 16 12 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 13 C 0.09 2.49 5.50 -17.36 -0.10 2.39 16 14 N -0.77 -23.40 11.83 55.55 0.66 -22.74 16 15 Si 0.91 20.32 29.56 -169.99 -5.02 15.29 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 C -0.11 -1.33 5.32 -26.73 -0.14 -1.48 16 20 C -0.12 -1.55 4.84 -26.73 -0.13 -1.67 16 21 H 0.08 0.75 7.14 -51.92 -0.37 0.37 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 24 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 1.20 6.54 -51.93 -0.34 0.86 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.13 4.83 -51.93 -0.25 0.88 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.38 7.34 7.63 -40.82 -0.31 7.03 16 33 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 34 H 0.07 0.96 7.18 -51.93 -0.37 0.59 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.69 6.92 -51.93 -0.36 0.33 16 37 H 0.09 1.44 6.32 -51.93 -0.33 1.11 16 LS Contribution 304.27 15.07 4.59 4.59 Total: -1.00 -34.00 304.27 -8.42 -42.42 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.68 Total: 6.05 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.36 Total: -3.37 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.33 Total: -40.07 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.08 Total: -19.06 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.34 Total: -5.85 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.00 -8.42 -42.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720522034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.574 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds