Wall clock time and date at job start Mon Mar 30 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81391 * 103.00067 * 2 1 4 4 C 1.53004 * 109.47451 * 184.99614 * 3 2 1 5 5 C 1.52997 * 109.47530 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46991 * 59.99990 * 5 4 3 7 7 C 1.53006 * 109.46626 * 60.00378 * 6 5 4 8 8 N 1.46498 * 109.46726 * 174.99859 * 7 6 5 9 9 C 1.34779 * 120.00066 * 179.97438 * 8 7 6 10 10 O 1.21692 * 119.99530 * 0.02562 * 9 8 7 11 11 C 1.46372 * 120.00215 * 179.97438 * 9 8 7 12 12 H 1.07999 * 120.00203 * 0.02562 * 11 9 8 13 13 C 1.40053 * 119.99821 * 179.97438 * 11 9 8 14 14 N 1.30672 * 120.00003 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99876 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46992 * 60.00224 * 15 13 11 17 17 H 1.48496 * 109.47246 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47130 * 300.00390 * 15 13 11 19 19 C 1.52997 * 109.47592 * 300.00342 * 6 5 4 20 20 C 1.53002 * 109.46978 * 59.99580 * 19 6 5 21 21 H 1.08998 * 109.46845 * 299.99590 * 1 2 3 22 22 H 1.08995 * 109.47282 * 60.00000 * 1 2 3 23 23 H 1.09005 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47262 * 305.00177 * 3 2 1 25 25 H 1.09001 * 109.46322 * 60.00120 * 4 3 2 26 26 H 1.09002 * 109.47347 * 300.00510 * 4 3 2 27 27 H 1.09002 * 109.47153 * 300.00544 * 5 4 3 28 28 H 1.08993 * 109.47194 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.47160 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 31 31 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 32 32 H 0.96998 * 120.00310 * 359.97438 * 8 7 6 33 33 H 0.97005 * 119.99737 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47375 * 179.97438 * 19 6 5 35 35 H 1.09002 * 109.46777 * 300.00227 * 19 6 5 36 36 H 1.09004 * 109.47006 * 180.02562 * 20 19 6 37 37 H 1.09002 * 109.47097 * 60.00199 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7370 1.9412 -0.1256 5 6 4.0812 3.4319 -0.1250 6 6 3.6020 4.0654 1.1826 7 6 4.2935 3.3817 2.3639 8 7 3.9268 4.0654 3.6066 9 6 4.4205 3.6339 4.7842 10 8 5.1713 2.6766 4.8149 11 6 4.0546 4.3173 6.0257 12 1 3.3887 5.1670 5.9984 13 6 4.5673 3.8685 7.2494 14 7 5.3726 2.8400 7.2825 15 14 4.0997 4.7401 8.8340 16 1 2.6274 4.6778 9.0173 17 1 4.7704 4.0763 9.9806 18 1 4.5301 6.1596 8.7636 19 6 2.0871 3.8917 1.3084 20 6 1.7429 2.4009 1.3077 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7294 2.2541 -0.8418 25 1 4.0783 1.4894 -1.0570 26 1 4.2296 1.4545 0.7162 27 1 3.5886 3.9189 -0.9666 28 1 5.1604 3.5556 -0.2149 29 1 3.8468 5.1276 1.1829 30 1 3.9783 2.3396 2.4158 31 1 5.3741 3.4283 2.2289 32 1 3.3287 4.8286 3.5820 33 1 5.7280 2.5294 8.1300 34 1 1.7457 4.3427 2.2402 35 1 1.5945 4.3787 0.4668 36 1 0.6636 2.2772 1.3968 37 1 2.2355 1.9139 2.1492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720522034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:07 Heat of formation + Delta-G solvation = -91.106850 kcal Electronic energy + Delta-G solvation = -17476.447207 eV Core-core repulsion = 14763.627277 eV Total energy + Delta-G solvation = -2712.819931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46778 -38.82556 -35.12435 -34.40220 -32.16821 -31.65484 -29.66241 -28.75489 -26.32184 -23.64070 -23.27179 -21.75241 -19.98528 -18.88615 -17.59572 -17.40739 -16.76429 -16.24689 -15.95640 -15.46816 -15.23383 -14.86585 -14.61136 -14.32919 -14.29062 -13.94757 -13.62633 -13.43890 -13.19040 -13.00381 -12.75442 -12.67116 -12.60393 -12.25725 -12.04460 -12.02048 -11.51419 -11.23620 -11.07187 -10.90918 -10.58727 -9.85299 -9.40441 -8.70226 -8.27704 -6.84464 0.76553 1.39812 1.43789 1.55424 1.68630 2.25430 2.49043 3.19484 3.62001 3.65260 3.67227 3.91831 4.04470 4.19300 4.29768 4.33794 4.34515 4.41769 4.50783 4.56743 4.71176 4.79084 4.88303 4.91088 4.97954 5.05671 5.22261 5.24121 5.29645 5.32103 5.40501 5.49109 5.89522 6.27195 6.32538 6.87624 7.59763 8.52118 8.69629 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.004762 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.805608 B = 5878.855272 C = 6191.606845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 S -0.338 6.338 3 C -0.026 4.026 4 C -0.104 4.104 5 C -0.096 4.096 6 C -0.090 4.090 7 C 0.137 3.863 8 N -0.751 5.751 9 C 0.535 3.465 10 O -0.637 6.637 11 C -0.575 4.575 12 H 0.088 0.912 13 C 0.027 3.973 14 N -0.825 5.825 15 Si 0.999 3.001 16 H -0.254 1.254 17 H -0.275 1.275 18 H -0.253 1.253 19 C -0.103 4.103 20 C -0.114 4.114 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.107 0.893 24 H 0.111 0.889 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.032 0.968 31 H 0.020 0.980 32 H 0.394 0.606 33 H 0.274 0.726 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 3.076 -15.744 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 S -0.110 6.110 3 C -0.154 4.154 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.109 4.109 7 C 0.013 3.987 8 N -0.405 5.405 9 C 0.339 3.661 10 O -0.524 6.524 11 C -0.612 4.612 12 H 0.106 0.894 13 C -0.187 4.187 14 N -0.454 5.454 15 Si 0.818 3.182 16 H -0.178 1.178 17 H -0.200 1.200 18 H -0.177 1.177 19 C -0.142 4.142 20 C -0.154 4.154 21 H 0.097 0.903 22 H 0.112 0.888 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.773 1.318 -15.686 18.529 hybrid contribution -0.775 1.023 0.993 1.623 sum -10.548 2.341 -14.693 18.238 Atomic orbital electron populations 1.23387 0.91001 1.07206 1.05747 1.87197 1.11147 1.14597 1.98017 1.23134 1.00042 0.91082 1.01173 1.21399 0.92605 0.97997 1.02252 1.21484 1.01779 0.93528 0.96775 1.21358 0.95721 1.00445 0.93334 1.21120 0.96955 0.95852 0.84787 1.45774 1.53296 1.35864 1.05593 1.18644 0.79799 0.83389 0.84269 1.90553 1.41791 1.32420 1.87666 1.21423 1.31818 1.16982 0.90929 0.89358 1.27006 0.92535 0.94525 1.04675 1.70204 1.24892 1.22223 1.28094 0.85066 0.79551 0.78845 0.74776 1.17772 1.20027 1.17687 1.21533 0.94690 0.94988 1.02982 1.21836 1.00800 0.96798 0.95935 0.90316 0.88765 0.87420 0.87123 0.90082 0.93874 0.88275 0.91131 0.89162 0.94932 0.96142 0.77187 0.91663 0.92040 0.88657 0.91051 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.45 113.37 1.18 -0.63 16 2 S -0.34 -8.64 21.79 -56.49 -1.23 -9.87 16 3 C -0.03 -0.59 2.65 30.60 0.08 -0.51 16 4 C -0.10 -2.51 4.94 30.59 0.15 -2.36 16 5 C -0.10 -1.99 5.45 30.59 0.17 -1.83 16 6 C -0.09 -2.29 2.70 -10.79 -0.03 -2.32 16 7 C 0.14 5.41 4.36 86.38 0.38 5.78 16 8 N -0.75 -34.15 5.28 -467.40 -2.47 -36.62 16 9 C 0.54 31.95 7.75 86.36 0.67 32.62 16 10 O -0.64 -44.39 15.02 -4.32 -0.06 -44.46 16 11 C -0.57 -33.17 9.54 24.83 0.24 -32.93 16 12 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 13 C 0.03 1.56 5.50 85.31 0.47 2.03 16 14 N -0.82 -51.88 11.83 21.84 0.26 -51.62 16 15 Si 1.00 41.49 29.56 68.60 2.03 43.52 16 16 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 17 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 19 C -0.10 -2.30 5.32 30.59 0.16 -2.14 16 20 C -0.11 -2.90 4.84 30.60 0.15 -2.75 16 21 H 0.08 1.36 7.14 -2.39 -0.02 1.34 16 22 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.04 1.36 6.54 -2.39 -0.02 1.35 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.03 1.44 4.83 -2.39 -0.01 1.43 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.39 15.18 7.63 -92.71 -0.71 14.47 16 33 H 0.27 15.62 8.29 -92.70 -0.77 14.85 16 34 H 0.06 1.52 7.18 -2.39 -0.02 1.50 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.59 6.92 -2.38 -0.02 1.57 16 37 H 0.04 1.43 6.32 -2.39 -0.02 1.42 16 Total: -1.00 -79.06 304.27 2.49 -76.56 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.35 Total: 27.53 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 3.62 Total: -5.03 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -2.21 Total: -88.24 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.06 Total: -44.46 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.23 Total: -9.87 kcal Total: -79.06 2.49 -76.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720522034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.545 kcal (2) G-P(sol) polarization free energy of solvation -79.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds