Wall clock time and date at job start Mon Mar 30 2020 04:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39621 * 120.56738 * 233.77994 * 3 2 1 5 5 N 1.31667 * 120.55868 * 180.02562 * 4 3 2 6 6 C 1.31949 * 121.88074 * 359.97438 * 5 4 3 7 7 C 1.38308 * 121.09777 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.34540 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47378 * 89.99721 * 8 7 6 10 10 C 1.47843 * 110.99640 * 49.15630 * 9 8 7 11 11 C 1.54916 * 104.79337 * 146.36598 * 10 9 8 12 12 C 1.55398 * 101.74107 * 323.02060 * 11 10 9 13 13 H 1.09005 * 110.67856 * 277.17709 * 12 11 10 14 14 C 1.50693 * 110.84773 * 153.86113 * 12 11 10 15 15 H 1.08003 * 120.00166 * 246.46481 * 14 12 11 16 16 C 1.37883 * 119.99850 * 66.46355 * 14 12 11 17 17 N 1.31508 * 119.99898 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99869 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47199 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46991 * 120.00244 * 18 16 14 21 21 H 1.48503 * 109.46812 * 239.99906 * 18 16 14 22 22 C 1.47439 * 111.00045 * 170.00338 * 9 8 7 23 23 C 1.38386 * 119.31398 * 0.27316 * 7 6 5 24 24 H 1.08008 * 119.72161 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.45133 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.47152 * 330.00211 * 8 7 6 27 27 H 1.08998 * 109.47294 * 210.00044 * 8 7 6 28 28 H 1.08996 * 110.37823 * 265.19398 * 10 9 8 29 29 H 1.09001 * 110.37314 * 27.42672 * 10 9 8 30 30 H 1.08995 * 110.98807 * 81.01940 * 11 10 9 31 31 H 1.08997 * 110.99078 * 204.83973 * 11 10 9 32 32 H 0.97004 * 120.00131 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.88998 * 356.14887 * 22 9 8 34 34 H 1.09003 * 109.88733 * 117.17548 * 22 9 8 35 35 H 1.07997 * 120.86099 * 179.72746 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2777 0.7113 0.9699 5 7 4.5944 0.7122 0.9694 6 6 5.2914 0.0504 0.0654 7 6 4.6632 -0.6778 -0.9285 8 6 5.4760 -1.4279 -1.9522 9 7 5.7401 -2.7888 -1.4662 10 6 4.4971 -3.4316 -0.9893 11 6 4.6694 -4.9317 -1.3358 12 6 5.4095 -4.8580 -2.7003 13 1 4.7013 -4.7033 -3.5144 14 6 6.2288 -6.1010 -2.9338 15 1 7.3067 -6.0399 -2.9622 16 6 5.6023 -7.3164 -3.1111 17 7 4.2898 -7.3908 -3.0769 18 14 6.6179 -8.8574 -3.3998 19 1 8.0611 -8.5075 -3.3927 20 1 6.3422 -9.8410 -2.3220 21 1 6.2578 -9.4486 -4.7135 22 6 6.3232 -3.6261 -2.5306 23 6 3.2804 -0.7064 -0.9764 24 1 2.7422 1.2657 1.7264 25 1 6.3704 0.0778 0.1022 26 1 6.4215 -0.9106 -2.1154 27 1 4.9226 -1.4780 -2.8899 28 1 4.3912 -3.3007 0.0876 29 1 3.6326 -3.0174 -1.5081 30 1 5.2815 -5.4371 -0.5889 31 1 3.7015 -5.4216 -1.4418 32 1 3.8490 -8.2459 -3.2012 33 1 6.3650 -3.0640 -3.4635 34 1 7.3257 -3.9446 -2.2445 35 1 2.7641 -1.2634 -1.7443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721606991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:59 Heat of formation + Delta-G solvation = 66.907207 kcal Electronic energy + Delta-G solvation = -18112.248788 eV Core-core repulsion = 15303.129660 eV Total energy + Delta-G solvation = -2809.119127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66482 -38.16273 -36.77856 -34.06939 -32.67332 -32.17055 -29.82645 -28.36790 -25.95663 -24.75560 -24.13152 -22.58247 -20.27321 -19.60235 -18.45404 -17.16970 -16.92077 -16.52204 -15.44746 -14.78549 -14.56693 -14.28266 -13.78242 -13.58595 -13.48628 -13.23334 -13.15154 -12.92191 -12.56218 -12.41039 -11.96015 -11.36180 -11.17978 -11.08836 -10.76219 -10.65838 -10.33477 -10.00402 -9.76463 -9.73110 -9.41857 -9.19064 -8.91716 -8.45050 -7.75346 -6.08307 -4.11055 0.38910 0.95040 2.41774 2.76834 3.26488 3.35111 3.38618 3.55085 3.65079 4.19706 4.38819 4.49375 4.56234 4.67285 4.75558 4.98651 5.24854 5.30321 5.51786 5.66496 5.70809 5.75083 5.96411 6.05059 6.11060 6.24911 6.31380 6.47378 6.77713 7.04660 7.07945 7.21798 7.44478 7.53392 7.61923 7.64356 7.80425 7.91629 8.34358 8.91174 9.53688 11.01840 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.032049 B = 0.004491 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.441200 B = 6233.531226 C = 6834.583021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.260 3.740 3 C -0.084 4.084 4 C 0.146 3.854 5 N -0.482 5.482 6 C 0.146 3.854 7 C -0.121 4.121 8 C 0.089 3.911 9 N -0.525 5.525 10 C 0.035 3.965 11 C -0.107 4.107 12 C 0.035 3.965 13 H 0.030 0.970 14 C -0.511 4.511 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.046 3.954 23 C -0.020 4.020 24 H 0.164 0.836 25 H 0.167 0.833 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.260 0.740 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 14.490 4.497 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.056 4.056 3 C -0.089 4.089 4 C -0.015 4.015 5 N -0.190 5.190 6 C -0.011 4.011 7 C -0.123 4.123 8 C -0.040 4.040 9 N -0.250 5.250 10 C -0.093 4.093 11 C -0.145 4.145 12 C 0.016 3.984 13 H 0.048 0.952 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.081 4.081 23 C -0.049 4.049 24 H 0.181 0.819 25 H 0.184 0.816 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.473 14.882 5.522 15.881 hybrid contribution -0.235 -1.538 -1.488 2.153 sum -0.708 13.344 4.033 13.958 Atomic orbital electron populations 1.81268 1.11865 1.08093 1.07505 1.25411 0.92304 0.93888 0.94025 1.16982 0.85525 1.05338 1.01089 1.22899 0.89971 0.93772 0.94867 1.67831 1.07374 1.19442 1.24313 1.22978 1.00954 0.89354 0.87850 1.20877 0.93555 0.98860 0.99012 1.21232 0.98356 0.91112 0.93258 1.63888 1.25590 1.00346 1.35152 1.23207 0.90062 0.97345 0.98659 1.22699 1.01351 0.90997 0.99475 1.19860 0.93364 0.91854 0.93336 0.95157 1.21098 0.92882 0.91814 1.49166 0.92304 1.24981 0.94868 0.99034 0.95007 1.69960 1.07737 1.25276 1.49892 0.86551 0.80570 0.83246 0.77745 1.19673 1.21032 1.21082 1.23059 1.00121 0.94459 0.90422 1.21709 0.93789 0.93337 0.96059 0.81929 0.81631 0.89541 0.93532 0.92185 0.94872 0.92368 0.91282 0.93054 0.94550 0.90853 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.71 18.54 41.84 0.78 -4.94 16 2 C 0.26 3.03 15.37 -22.47 -0.35 2.69 16 3 C -0.08 -0.86 5.74 -106.78 -0.61 -1.48 16 4 C 0.15 1.38 10.92 -17.11 -0.19 1.20 16 5 N -0.48 -5.19 10.35 -12.89 -0.13 -5.32 16 6 C 0.15 1.51 10.85 -17.48 -0.19 1.32 16 7 C -0.12 -1.34 4.63 -104.54 -0.48 -1.83 16 8 C 0.09 1.11 5.03 -4.97 -0.03 1.09 16 9 N -0.53 -8.67 5.31 -232.68 -1.24 -9.90 16 10 C 0.03 0.61 5.36 -2.29 -0.01 0.60 16 11 C -0.11 -2.36 5.96 -24.45 -0.15 -2.50 16 12 C 0.04 0.82 2.79 -89.81 -0.25 0.57 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.51 -13.45 8.47 -34.44 -0.29 -13.74 16 15 H 0.06 1.53 7.53 -52.48 -0.40 1.13 16 16 C 0.06 1.70 5.36 -17.82 -0.10 1.60 16 17 N -0.89 -24.96 12.51 55.43 0.69 -24.26 16 18 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.05 0.88 6.45 -2.84 -0.02 0.86 16 23 C -0.02 -0.22 8.07 -38.85 -0.31 -0.54 16 24 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 25 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 26 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 27 H 0.05 0.59 7.91 -51.93 -0.41 0.18 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.03 0.55 5.75 -51.93 -0.30 0.25 16 30 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 31 H 0.07 1.66 7.78 -51.93 -0.40 1.25 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.04 0.64 7.49 -51.93 -0.39 0.25 16 34 H 0.07 1.46 7.63 -51.93 -0.40 1.06 16 35 H 0.14 1.53 7.17 -52.49 -0.38 1.16 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -28.86 300.69 -7.70 -36.56 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.33 Total: -2.26 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.97 Total: -10.15 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.10 Total: -44.42 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.86 -7.70 -36.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721606991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.464 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds