Wall clock time and date at job start Mon Mar 30 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39621 * 120.56738 * 233.77994 * 3 2 1 5 5 N 1.31667 * 120.55868 * 180.02562 * 4 3 2 6 6 C 1.31949 * 121.88074 * 359.97438 * 5 4 3 7 7 C 1.38308 * 121.09777 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.34540 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47378 * 89.99721 * 8 7 6 10 10 C 1.47843 * 110.99640 * 49.15630 * 9 8 7 11 11 C 1.54916 * 104.79337 * 146.36598 * 10 9 8 12 12 C 1.55398 * 101.74107 * 323.02060 * 11 10 9 13 13 H 1.09005 * 110.67856 * 277.17709 * 12 11 10 14 14 C 1.50693 * 110.84773 * 153.86113 * 12 11 10 15 15 H 1.08003 * 120.00166 * 246.46481 * 14 12 11 16 16 C 1.37883 * 119.99850 * 66.46355 * 14 12 11 17 17 N 1.31508 * 119.99898 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99869 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47199 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46991 * 120.00244 * 18 16 14 21 21 H 1.48503 * 109.46812 * 239.99906 * 18 16 14 22 22 C 1.47439 * 111.00045 * 170.00338 * 9 8 7 23 23 C 1.38386 * 119.31398 * 0.27316 * 7 6 5 24 24 H 1.08008 * 119.72161 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.45133 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.47152 * 330.00211 * 8 7 6 27 27 H 1.08998 * 109.47294 * 210.00044 * 8 7 6 28 28 H 1.08996 * 110.37823 * 265.19398 * 10 9 8 29 29 H 1.09001 * 110.37314 * 27.42672 * 10 9 8 30 30 H 1.08995 * 110.98807 * 81.01940 * 11 10 9 31 31 H 1.08997 * 110.99078 * 204.83973 * 11 10 9 32 32 H 0.97004 * 120.00131 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.88998 * 356.14887 * 22 9 8 34 34 H 1.09003 * 109.88733 * 117.17548 * 22 9 8 35 35 H 1.07997 * 120.86099 * 179.72746 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2777 0.7113 0.9699 5 7 4.5944 0.7122 0.9694 6 6 5.2914 0.0504 0.0654 7 6 4.6632 -0.6778 -0.9285 8 6 5.4760 -1.4279 -1.9522 9 7 5.7401 -2.7888 -1.4662 10 6 4.4971 -3.4316 -0.9893 11 6 4.6694 -4.9317 -1.3358 12 6 5.4095 -4.8580 -2.7003 13 1 4.7013 -4.7033 -3.5144 14 6 6.2288 -6.1010 -2.9338 15 1 7.3067 -6.0399 -2.9622 16 6 5.6023 -7.3164 -3.1111 17 7 4.2898 -7.3908 -3.0769 18 14 6.6179 -8.8574 -3.3998 19 1 8.0611 -8.5075 -3.3927 20 1 6.3422 -9.8410 -2.3220 21 1 6.2578 -9.4486 -4.7135 22 6 6.3232 -3.6261 -2.5306 23 6 3.2804 -0.7064 -0.9764 24 1 2.7422 1.2657 1.7264 25 1 6.3704 0.0778 0.1022 26 1 6.4215 -0.9106 -2.1154 27 1 4.9226 -1.4780 -2.8899 28 1 4.3912 -3.3007 0.0876 29 1 3.6326 -3.0174 -1.5081 30 1 5.2815 -5.4371 -0.5889 31 1 3.7015 -5.4216 -1.4418 32 1 3.8490 -8.2459 -3.2012 33 1 6.3650 -3.0640 -3.4635 34 1 7.3257 -3.9446 -2.2445 35 1 2.7641 -1.2634 -1.7443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721606991.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:58 Heat of formation + Delta-G solvation = 48.989599 kcal Electronic energy + Delta-G solvation = -18113.025753 eV Core-core repulsion = 15303.129660 eV Total energy + Delta-G solvation = -2809.896093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.53070 -39.57251 -37.75905 -35.52667 -34.00893 -33.28536 -31.23056 -30.01501 -27.23869 -25.83172 -25.62473 -23.54949 -21.76438 -21.29374 -19.40324 -18.57471 -17.92261 -17.70106 -16.84924 -16.41651 -16.06167 -15.38740 -14.93502 -14.60088 -14.47444 -14.32875 -14.16656 -14.09239 -14.03472 -13.80778 -13.23631 -12.99946 -12.91445 -12.66672 -12.38066 -12.29914 -11.97425 -11.54288 -11.21274 -10.96272 -10.77857 -10.57142 -10.48468 -10.05794 -9.10412 -8.13851 -6.22533 -0.42643 0.12302 1.40915 1.43793 1.49329 1.54541 1.87643 2.43788 2.66839 2.79871 3.18679 3.33978 3.45408 3.69693 3.75079 3.91564 4.10102 4.16649 4.35351 4.45910 4.57159 4.63768 4.74305 4.83734 4.88661 4.95047 5.05627 5.14911 5.30905 5.36584 5.52510 5.60966 5.73021 5.89522 6.14417 6.29859 6.31343 6.37164 6.85390 6.87732 7.45497 8.95829 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.032049 B = 0.004491 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.441200 B = 6233.531226 C = 6834.583021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.283 3.717 3 C -0.088 4.088 4 C 0.159 3.841 5 N -0.495 5.495 6 C 0.154 3.846 7 C -0.130 4.130 8 C 0.090 3.910 9 N -0.524 5.524 10 C 0.051 3.949 11 C -0.103 4.103 12 C 0.025 3.975 13 H 0.000 1.000 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.952 3.048 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.282 1.282 22 C 0.059 3.941 23 C -0.022 4.022 24 H 0.190 0.810 25 H 0.186 0.814 26 H 0.112 0.888 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.259 0.741 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 15.934 5.102 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.032 4.032 3 C -0.093 4.093 4 C -0.002 4.002 5 N -0.203 5.203 6 C -0.003 4.003 7 C -0.132 4.132 8 C -0.038 4.038 9 N -0.248 5.248 10 C -0.076 4.076 11 C -0.142 4.142 12 C 0.005 3.995 13 H 0.019 0.981 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.186 4.186 17 N -0.562 5.562 18 Si 0.778 3.222 19 H -0.187 1.187 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.068 4.068 23 C -0.050 4.050 24 H 0.207 0.793 25 H 0.202 0.798 26 H 0.130 0.870 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.800 16.345 6.128 17.475 hybrid contribution -0.616 -1.933 -1.669 2.627 sum 0.184 14.412 4.459 15.087 Atomic orbital electron populations 1.81295 1.13089 1.09655 1.08963 1.25518 0.92336 0.92611 0.92760 1.16935 0.84618 1.06142 1.01633 1.23320 0.89736 0.92589 0.94525 1.67946 1.07779 1.19941 1.24604 1.23285 1.01914 0.88143 0.86928 1.20707 0.93289 0.99794 0.99400 1.21314 1.00062 0.88873 0.93569 1.63842 1.24889 1.01711 1.34398 1.23015 0.91157 0.93942 0.99532 1.22488 0.99201 0.94086 0.98394 1.19843 0.93588 0.93159 0.92872 0.98135 1.21506 0.93216 0.93147 1.48517 0.92335 1.25746 0.95816 1.02030 0.95039 1.70085 1.09193 1.25812 1.51099 0.85584 0.79499 0.79619 0.77455 1.18712 1.20989 1.20842 1.22787 0.98738 0.93249 0.92025 1.21767 0.94002 0.93194 0.96063 0.79341 0.79751 0.87015 0.93500 0.91014 0.93767 0.94250 0.94117 0.93199 0.92928 0.91513 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.29 18.54 19.00 0.35 -11.94 16 2 C 0.28 6.23 15.37 88.33 1.36 7.58 16 3 C -0.09 -1.61 5.74 -21.26 -0.12 -1.73 16 4 C 0.16 2.54 10.92 85.05 0.93 3.46 16 5 N -0.50 -9.04 10.35 -194.71 -2.01 -11.06 16 6 C 0.15 2.68 10.85 84.69 0.92 3.60 16 7 C -0.13 -2.51 4.63 -19.81 -0.09 -2.60 16 8 C 0.09 1.99 5.03 85.56 0.43 2.42 16 9 N -0.52 -16.24 5.31 -890.07 -4.72 -20.97 16 10 C 0.05 1.74 5.36 86.78 0.47 2.21 16 11 C -0.10 -4.65 5.96 32.07 0.19 -4.46 16 12 C 0.02 1.18 2.79 -10.27 -0.03 1.15 16 13 H 0.00 0.02 8.14 -2.38 -0.02 0.01 16 14 C -0.53 -28.01 8.47 25.60 0.22 -27.79 16 15 H 0.06 3.04 7.53 -2.91 -0.02 3.02 16 16 C 0.01 0.67 5.36 84.66 0.45 1.13 16 17 N -0.92 -53.05 12.51 21.45 0.27 -52.79 16 18 Si 0.95 42.92 29.54 68.60 2.03 44.94 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 C 0.06 2.21 6.45 86.65 0.56 2.77 16 23 C -0.02 -0.43 8.07 22.74 0.18 -0.24 16 24 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 25 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 26 H 0.11 1.96 8.09 -2.38 -0.02 1.94 16 27 H 0.05 1.07 7.91 -2.39 -0.02 1.05 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.41 5.75 -2.39 -0.01 1.40 16 30 H 0.04 1.88 8.04 -2.39 -0.02 1.86 16 31 H 0.04 2.02 7.78 -2.39 -0.02 2.00 16 32 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.05 1.77 7.49 -2.39 -0.02 1.75 16 34 H 0.07 2.58 7.63 -2.39 -0.02 2.56 16 35 H 0.14 2.82 7.17 -2.91 -0.02 2.80 16 Total: -1.00 -62.77 300.69 2.47 -60.30 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.10 Total: 4.01 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.46 Total: -12.51 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -6.12 Total: -96.75 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -62.77 2.47 -60.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721606991.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.293 kcal (2) G-P(sol) polarization free energy of solvation -62.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds