Wall clock time and date at job start Mon Mar 30 2020 04:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47036 * 279.16713 * 3 2 1 5 5 N 1.46501 * 109.46781 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99968 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99871 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99906 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.46813 * 180.02562 * 8 6 5 10 10 C 1.37640 * 120.13180 * 265.30632 * 9 8 6 11 11 C 1.38613 * 120.24862 * 180.32332 * 10 9 8 12 12 C 1.38655 * 120.50174 * 359.67182 * 11 10 9 13 13 C 1.37598 * 120.24576 * 359.97438 * 12 11 10 14 14 C 1.40702 * 120.12495 * 85.00356 * 9 8 6 15 15 C 1.41393 * 120.24620 * 359.97406 * 14 9 8 16 16 H 1.07999 * 119.99787 * 29.07372 * 15 14 9 17 17 C 1.39938 * 120.00244 * 209.07592 * 15 14 9 18 18 N 1.30823 * 120.00241 * 197.10039 * 17 15 14 19 19 Si 1.86803 * 119.99882 * 17.09514 * 17 15 14 20 20 H 1.48495 * 109.47432 * 270.00073 * 19 17 15 21 21 H 1.48498 * 109.46929 * 30.00589 * 19 17 15 22 22 H 1.48504 * 109.46998 * 150.00206 * 19 17 15 23 23 H 4.44649 * 5.63410 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.46863 * 159.16596 * 3 2 1 25 25 H 1.09002 * 109.47078 * 39.17183 * 3 2 1 26 26 H 1.08998 * 109.47497 * 60.00709 * 4 3 2 27 27 H 1.09002 * 109.47570 * 300.00168 * 4 3 2 28 28 H 0.96998 * 120.00101 * 0.02562 * 5 4 3 29 29 H 1.08999 * 109.47299 * 60.00523 * 8 6 5 30 30 H 1.08998 * 109.47401 * 299.99992 * 8 6 5 31 31 H 1.08005 * 119.87130 * 0.02562 * 10 9 8 32 32 H 1.08001 * 119.74473 * 179.69460 * 11 10 9 33 33 H 1.08002 * 119.87493 * 180.02562 * 12 11 10 34 34 H 1.08003 * 120.12022 * 180.02562 * 13 12 11 35 35 H 0.97004 * 119.99819 * 355.45620 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.2289 1.4240 5 7 4.6211 -0.2289 1.4239 6 6 5.2951 -0.4141 2.5763 7 8 4.6888 -0.5813 3.6132 8 6 6.8021 -0.4135 2.5762 9 6 7.3046 -0.6397 3.9788 10 6 7.6263 0.4330 4.7790 11 6 8.0950 0.2275 6.0672 12 6 8.2389 -1.0578 6.5671 13 6 7.9165 -2.1448 5.7875 14 6 7.4406 -1.9483 4.4777 15 6 7.1066 -3.0578 3.6674 16 1 7.2018 -2.9904 2.5937 17 6 6.6526 -4.2432 4.2565 18 7 6.6617 -5.3586 3.5730 19 14 6.0338 -4.2328 6.0190 20 1 7.1656 -4.4994 6.9427 21 1 5.4441 -2.9056 6.3287 22 1 4.9996 -5.2853 6.1867 23 1 -1.0500 0.0002 0.0001 24 1 3.0089 0.9613 -0.3655 25 1 3.0097 -0.7959 -0.6491 26 1 2.7933 -1.1896 1.7895 27 1 2.7924 0.5676 2.0732 28 1 5.1060 -0.0948 0.5946 29 1 7.1651 0.5470 2.2104 30 1 7.1658 -1.2103 1.9274 31 1 7.5177 1.4385 4.3999 32 1 8.3497 1.0750 6.6863 33 1 8.6046 -1.2062 7.5724 34 1 8.0289 -3.1450 6.1791 35 1 6.9206 -5.3525 2.6381 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776922868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:04 Heat of formation + Delta-G solvation = 0.172242 kcal Electronic energy + Delta-G solvation = -18199.322573 eV Core-core repulsion = 15355.016850 eV Total energy + Delta-G solvation = -2844.305724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84616 -39.36275 -36.85743 -35.58804 -34.42039 -33.49904 -31.99781 -30.82370 -28.45629 -26.42367 -24.51719 -23.19108 -22.08401 -21.04169 -20.02079 -19.00668 -17.75590 -17.46343 -16.88338 -16.74877 -16.25462 -15.94245 -15.48894 -15.09813 -14.80811 -14.59045 -14.29075 -13.89308 -13.62137 -13.44847 -13.21490 -13.07644 -12.74171 -12.57459 -12.15330 -11.93990 -11.58314 -11.30272 -11.12812 -11.09313 -10.85829 -10.81127 -10.07286 -9.55142 -9.33175 -9.13851 -6.47419 0.82284 0.91723 1.31166 1.51290 1.72102 1.73715 1.81739 1.88003 2.15952 2.38801 2.71875 3.50243 3.61514 3.97013 4.08456 4.09372 4.28482 4.36447 4.45033 4.50168 4.57684 4.71376 4.89791 4.90856 4.97772 5.00226 5.11107 5.26701 5.48473 5.53062 5.63115 5.84638 5.91150 6.04293 6.20098 6.49609 6.62112 6.69297 6.76172 6.89843 7.42802 8.08347 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.006207 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.665871 B = 4510.222577 C = 5336.957144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.224 4.224 3 C -0.010 4.010 4 C 0.128 3.872 5 N -0.724 5.724 6 C 0.515 3.485 7 O -0.575 6.575 8 C -0.070 4.070 9 C -0.177 4.177 10 C -0.079 4.079 11 C -0.232 4.232 12 C -0.089 4.089 13 C -0.267 4.267 14 C 0.085 3.915 15 C -0.533 4.533 16 H 0.062 0.938 17 C 0.014 3.986 18 N -0.854 5.854 19 Si 1.096 2.904 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.287 1.287 23 H 0.246 0.754 24 H 0.118 0.882 25 H 0.106 0.894 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.418 0.582 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 11.564 -7.404 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.224 4.224 3 C -0.047 4.047 4 C 0.004 3.996 5 N -0.378 5.378 6 C 0.303 3.697 7 O -0.453 6.453 8 C -0.110 4.110 9 C -0.178 4.178 10 C -0.098 4.098 11 C -0.251 4.251 12 C -0.107 4.107 13 C -0.286 4.286 14 C 0.083 3.917 15 C -0.564 4.564 16 H 0.080 0.920 17 C -0.199 4.199 18 N -0.479 5.479 19 Si 0.921 3.079 20 H -0.183 1.183 21 H -0.205 1.205 22 H -0.214 1.214 23 H 0.263 0.737 24 H 0.136 0.864 25 H 0.124 0.876 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.255 0.745 29 H 0.141 0.859 30 H 0.110 0.890 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.115 0.885 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.772 10.389 -5.560 13.121 hybrid contribution 0.557 0.405 -1.739 1.871 sum -5.215 10.794 -7.299 14.035 Atomic orbital electron populations 1.25768 0.96981 0.99996 0.98578 1.23266 0.95163 1.01667 1.02329 1.18794 0.84990 1.05556 0.95317 1.21101 0.80100 1.00895 0.97509 1.45800 1.06718 1.74788 1.10535 1.21139 0.91009 0.74450 0.83071 1.90669 1.71232 1.49313 1.34100 1.20327 0.90066 1.04499 0.96101 1.19545 1.08473 0.92787 0.97013 1.20913 0.97094 0.97570 0.94175 1.20896 1.10715 0.96340 0.97103 1.21006 0.97946 0.93002 0.98752 1.21313 1.11495 0.98155 0.97657 1.17800 0.88797 0.93089 0.92059 1.20493 1.42361 0.98423 0.95090 0.92033 1.27804 0.92075 0.90880 1.09105 1.70611 1.38176 1.28020 1.11137 0.83271 0.77085 0.76164 0.71385 1.18266 1.20487 1.21448 0.73715 0.86413 0.87613 0.94191 0.92388 0.74504 0.85885 0.89032 0.85531 0.85353 0.85844 0.88510 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.70 19.25 74.32 1.43 -2.27 16 2 C -0.22 -4.82 13.34 31.13 0.42 -4.40 16 3 C -0.01 -0.18 5.82 28.79 0.17 -0.02 16 4 C 0.13 3.45 5.63 86.38 0.49 3.94 16 5 N -0.72 -20.01 5.56 -463.06 -2.57 -22.58 16 6 C 0.52 19.98 7.82 87.66 0.69 20.66 16 7 O -0.58 -28.80 16.03 -3.03 -0.05 -28.85 16 8 C -0.07 -2.57 5.36 29.10 0.16 -2.41 16 9 C -0.18 -8.00 4.43 -19.40 -0.09 -8.09 16 10 C -0.08 -3.22 9.66 22.22 0.21 -3.00 16 11 C -0.23 -9.24 10.05 22.46 0.23 -9.01 16 12 C -0.09 -3.85 10.02 22.22 0.22 -3.63 16 13 C -0.27 -13.41 7.26 22.73 0.16 -13.24 16 14 C 0.08 4.45 5.13 -21.29 -0.11 4.34 16 15 C -0.53 -29.78 8.80 23.46 0.21 -29.58 16 16 H 0.06 3.46 6.60 -2.91 -0.02 3.44 16 17 C 0.01 0.81 5.42 85.26 0.46 1.27 16 18 N -0.85 -49.02 13.65 21.82 0.30 -48.72 16 19 Si 1.10 54.80 24.89 68.60 1.71 56.51 16 20 H -0.26 -11.71 6.45 99.48 0.64 -11.07 16 21 H -0.28 -14.77 7.01 99.48 0.70 -14.07 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 23 H 0.25 2.66 7.80 -4.42 -0.03 2.63 16 24 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.42 7.83 8.47 -92.71 -0.79 7.05 16 29 H 0.12 3.29 8.06 -2.39 -0.02 3.27 16 30 H 0.09 3.38 6.51 -2.39 -0.02 3.36 16 31 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 32 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 33 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.10 4.89 4.43 -2.91 -0.01 4.87 16 35 H 0.28 15.51 8.73 -92.71 -0.81 14.70 16 Total: -1.00 -73.38 306.04 4.23 -69.15 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.20 Total: 19.94 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 4.64 Total: -45.43 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -2.27 Total: -71.31 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.05 Total: -28.85 kcal Atomic # 14 Polarization: 54.80 SS G_CDS: 1.71 Total: 56.51 kcal Total: -73.38 4.23 -69.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776922868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.321 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds