Wall clock time and date at job start Mon Mar 30 2020 04:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99982 * 2 1 4 4 C 1.52999 * 109.47155 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46823 * 64.50927 * 4 3 2 6 6 C 1.36813 * 120.00152 * 90.33547 * 5 4 3 7 7 H 1.07999 * 120.00046 * 222.86905 * 6 5 4 8 8 C 1.39071 * 120.00015 * 42.86976 * 6 5 4 9 9 N 1.31350 * 120.00102 * 207.06357 * 8 6 5 10 10 Si 1.86804 * 120.00204 * 27.05927 * 8 6 5 11 11 H 1.48499 * 109.47099 * 95.29779 * 10 8 6 12 12 H 1.48502 * 109.47295 * 215.30224 * 10 8 6 13 13 H 1.48504 * 109.46926 * 335.30358 * 10 8 6 14 14 C 1.34777 * 119.99752 * 270.05980 * 5 4 3 15 15 O 1.21657 * 120.00280 * 4.88445 * 14 5 4 16 16 C 1.47149 * 119.99914 * 184.88803 * 14 5 4 17 17 F 1.35105 * 119.99842 * 5.68814 * 16 14 5 18 18 C 1.33251 * 120.00181 * 185.69143 * 16 14 5 19 19 C 1.51408 * 136.31307 * 359.62653 * 18 16 14 20 20 C 1.53385 * 87.51659 * 206.05967 * 19 18 16 21 21 C 1.51405 * 136.31845 * 180.02562 * 18 16 14 22 22 H 1.09009 * 109.46760 * 299.99352 * 1 2 3 23 23 H 1.08993 * 109.47303 * 59.99291 * 1 2 3 24 24 H 1.08997 * 109.47302 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.47009 * 60.00709 * 3 2 1 26 26 H 1.08997 * 109.47347 * 300.00676 * 3 2 1 27 27 H 1.09003 * 109.47337 * 304.50836 * 4 3 2 28 28 H 1.08999 * 109.47273 * 184.50898 * 4 3 2 29 29 H 0.97001 * 119.99943 * 179.97438 * 9 8 6 30 30 H 1.09006 * 113.56037 * 320.63776 * 19 18 16 31 31 H 1.08995 * 113.56152 * 91.37490 * 19 18 16 32 32 H 1.08992 * 113.96473 * 220.29185 * 20 19 18 33 33 H 1.08997 * 113.60017 * 88.79649 * 20 19 18 34 34 H 1.09004 * 113.55973 * 268.62001 * 21 18 16 35 35 H 1.08997 * 113.56563 * 39.35620 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9748 0.5537 -1.2477 6 6 4.2707 1.3258 -2.3377 7 1 3.9342 1.0261 -3.3192 8 6 5.0049 2.4966 -2.1818 9 7 4.8573 3.4831 -3.0364 10 14 6.2010 2.6664 -0.7570 11 1 7.5662 2.2976 -1.2101 12 1 6.2017 4.0713 -0.2760 13 1 5.7859 1.7651 0.3478 14 6 4.0927 -0.7870 -1.3195 15 8 3.7501 -1.4790 -0.3794 16 6 4.6359 -1.4137 -2.5350 17 9 5.1227 -0.6433 -3.5324 18 6 4.6475 -2.7410 -2.6520 19 6 4.2228 -3.9189 -1.8008 20 6 5.2755 -4.7505 -2.5444 21 6 5.0979 -3.7446 -3.6923 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.6887 1.8463 0.8901 26 1 1.6886 1.8464 -0.8899 27 1 3.8521 0.5754 0.8460 28 1 3.9786 2.1772 0.0801 29 1 5.3691 4.2998 -2.9275 30 1 4.4404 -3.7911 -0.7403 31 1 3.1994 -4.2444 -1.9868 32 1 4.9491 -5.7610 -2.7898 33 1 6.2619 -4.7205 -2.0817 34 1 4.3146 -4.0223 -4.3976 35 1 6.0329 -3.4739 -4.1828 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819564301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:30 Heat of formation + Delta-G solvation = -63.735145 kcal Electronic energy + Delta-G solvation = -20137.254319 eV Core-core repulsion = 16859.408139 eV Total energy + Delta-G solvation = -3277.846181 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.78946 -38.91966 -37.99100 -36.91051 -34.81612 -32.04862 -30.01451 -28.82508 -25.89543 -25.36238 -24.88825 -23.31267 -21.84486 -19.65214 -18.20996 -17.26585 -16.29887 -16.00196 -15.62142 -15.37394 -15.17729 -14.63158 -14.40704 -14.28840 -14.17878 -13.21897 -13.03048 -12.47267 -12.20419 -12.11224 -12.05997 -11.82924 -11.58342 -11.40322 -11.17089 -10.97207 -10.74810 -10.44707 -10.32326 -10.04121 -9.88334 -9.21723 -9.04624 -8.55036 -8.13157 -7.65520 -6.52674 -4.06419 1.98930 3.08627 3.20918 3.27444 4.08148 4.13108 4.20016 4.42685 4.80283 4.85186 5.03837 5.08295 5.38964 5.54573 5.62721 5.69588 5.83318 5.90196 5.93250 5.94837 6.00127 6.00848 6.06465 6.11701 6.27000 6.45701 6.56110 6.58621 6.82196 7.23421 7.35095 7.76990 8.06463 8.33050 8.95812 9.30205 9.66352 10.57286 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.009850 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.136939 B = 2841.860538 C = 3951.793369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.365 6.365 3 C 0.050 3.950 4 C 0.116 3.884 5 N -0.446 5.446 6 C -0.348 4.348 7 H 0.110 0.890 8 C 0.075 3.925 9 N -0.846 5.846 10 Si 0.854 3.146 11 H -0.275 1.275 12 H -0.280 1.280 13 H -0.254 1.254 14 C 0.504 3.496 15 O -0.560 6.560 16 C 0.080 3.920 17 F -0.118 7.118 18 C -0.184 4.184 19 C -0.071 4.071 20 C -0.141 4.141 21 C -0.091 4.091 22 H 0.031 0.969 23 H 0.034 0.966 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.275 0.725 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -7.768 2.575 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.028 4.028 4 C -0.007 4.007 5 N -0.166 5.166 6 C -0.475 4.475 7 H 0.127 0.873 8 C -0.134 4.134 9 N -0.480 5.480 10 Si 0.679 3.321 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.178 1.178 14 C 0.293 3.707 15 O -0.444 6.444 16 C 0.058 3.942 17 F -0.096 7.096 18 C -0.188 4.188 19 C -0.108 4.108 20 C -0.178 4.178 21 C -0.128 4.128 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.628 -7.985 2.951 8.910 hybrid contribution 0.601 0.972 0.231 1.166 sum -2.027 -7.013 3.182 7.964 Atomic orbital electron populations 1.22640 0.82989 1.01811 0.99017 1.88145 1.17783 1.27253 1.95134 1.22970 0.95110 0.84986 0.99717 1.21748 0.91673 0.98223 0.89037 1.43477 1.57154 1.04309 1.11618 1.19273 1.35298 1.04436 0.88526 0.87260 1.25417 0.96255 0.94761 0.96929 1.69817 1.37176 1.03538 1.37466 0.87308 0.83115 0.78052 0.83659 1.20051 1.20554 1.17761 1.18201 0.82497 0.83331 0.86684 1.90682 1.53258 1.62569 1.37872 1.18761 1.00978 0.86794 0.87649 1.91540 1.85071 1.74658 1.58374 1.23064 1.02932 0.91807 1.01015 1.21762 0.98338 0.90932 0.99807 1.22706 0.99997 0.97384 0.97726 1.21996 1.01166 0.93861 0.95759 0.95062 0.94715 0.90411 0.93914 0.92426 0.90600 0.90172 0.91459 0.89776 0.89412 0.91080 0.90098 0.89095 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.57 9.26 -48.32 -0.45 -8.02 16 3 C 0.05 0.99 6.28 37.16 0.23 1.22 16 4 C 0.12 2.59 4.07 -4.04 -0.02 2.58 16 5 N -0.45 -11.10 2.02 -116.14 -0.23 -11.34 16 6 C -0.35 -9.29 7.81 -15.02 -0.12 -9.41 16 7 H 0.11 3.16 6.70 -52.49 -0.35 2.81 16 8 C 0.08 1.99 5.16 -17.45 -0.09 1.90 16 9 N -0.85 -23.21 13.95 55.50 0.77 -22.44 16 10 Si 0.85 19.85 26.31 -169.99 -4.47 15.38 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.25 -5.73 5.63 56.52 0.32 -5.41 16 14 C 0.50 12.43 7.25 -12.64 -0.09 12.34 16 15 O -0.56 -14.12 13.71 -7.86 -0.11 -14.23 16 16 C 0.08 1.83 7.18 -37.71 -0.27 1.56 16 17 F -0.12 -2.83 14.00 2.25 0.03 -2.80 16 18 C -0.18 -3.52 6.89 -100.40 -0.69 -4.21 16 19 C -0.07 -1.16 7.05 -27.55 -0.19 -1.36 16 20 C -0.14 -1.84 8.17 -26.20 -0.21 -2.06 16 21 C -0.09 -1.34 7.95 -27.41 -0.22 -1.55 16 22 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.69 7.50 -51.93 -0.39 1.30 16 28 H 0.08 1.74 4.54 -51.93 -0.24 1.50 16 29 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.08 1.50 7.41 -51.93 -0.38 1.11 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -30.01 293.80 -5.39 -35.40 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.81 Total: 0.97 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.56 Total: 2.64 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.54 Total: -33.77 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.56 Total: -22.25 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.03 Total: -2.80 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.47 Total: 15.38 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.01 -5.39 -35.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819564301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.336 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds