Wall clock time and date at job start Mon Mar 30 2020 04:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00127 * 2 1 4 4 H 1.48504 * 109.47522 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47284 * 300.00294 * 3 2 1 6 6 H 1.48503 * 109.47278 * 60.00236 * 3 2 1 7 7 C 1.37882 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99624 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00177 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46967 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47206 * 180.02562 * 10 9 7 12 12 C 1.50689 * 109.47249 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00136 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00235 * 179.97438 * 12 11 10 15 15 O 1.41600 * 120.00431 * 180.02562 * 14 12 11 16 16 C 1.42894 * 114.00146 * 180.02562 * 15 14 12 17 17 H 1.08992 * 109.48369 * 29.97117 * 16 15 14 18 18 C 1.53096 * 109.48180 * 149.99978 * 16 15 14 19 19 C 1.53178 * 109.16278 * 177.59001 * 18 16 15 20 20 C 1.53178 * 109.03511 * 303.01594 * 19 18 16 21 21 C 1.53093 * 109.16255 * 56.98447 * 20 19 18 22 22 O 1.42904 * 109.42351 * 302.38111 * 21 20 19 23 23 H 0.97000 * 119.99809 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46970 * 60.00321 * 9 7 2 25 25 H 1.09003 * 109.47008 * 299.99883 * 9 7 2 26 26 H 1.08997 * 109.46986 * 60.00364 * 10 9 7 27 27 H 1.09001 * 109.46779 * 300.00145 * 10 9 7 28 28 H 1.09002 * 109.47331 * 59.99587 * 11 10 9 29 29 H 1.09004 * 109.46989 * 300.00434 * 11 10 9 30 30 H 0.96996 * 119.99760 * 359.97438 * 14 12 11 31 31 H 1.08999 * 109.52155 * 57.68210 * 18 16 15 32 32 H 1.08996 * 109.57060 * 297.52468 * 18 16 15 33 33 H 1.09002 * 109.54068 * 183.15004 * 19 18 16 34 34 H 1.08996 * 109.54450 * 62.88578 * 19 18 16 35 35 H 1.09000 * 109.52619 * 297.07706 * 20 19 18 36 36 H 1.08998 * 109.51869 * 176.88944 * 20 19 18 37 37 H 1.09002 * 109.48198 * 62.37219 * 21 20 19 38 38 H 1.08999 * 109.48029 * 182.39833 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4803 -4.9872 -0.0025 12 6 2.4595 -6.1325 -0.0044 13 8 3.6519 -5.9109 -0.0047 14 7 2.0102 -7.4033 -0.0047 15 8 2.9304 -8.4796 -0.0059 16 6 2.3158 -9.7696 -0.0068 17 1 1.3557 -9.7146 -0.5196 18 6 3.2244 -10.7676 -0.7296 19 6 2.5873 -12.1594 -0.6737 20 6 2.3518 -12.5427 0.7905 21 6 1.4769 -11.4762 1.4547 22 8 2.1126 -10.2015 1.3405 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8877 27 1 2.8712 -3.6039 -0.8923 28 1 0.8531 -5.0443 -0.8922 29 1 0.8539 -5.0455 0.8877 30 1 1.0566 -7.5805 -0.0033 31 1 4.1986 -10.7930 -0.2414 32 1 3.3457 -10.4640 -1.7694 33 1 3.2553 -12.8851 -1.1377 34 1 1.6355 -12.1464 -1.2049 35 1 3.3083 -12.6040 1.3094 36 1 1.8482 -13.5082 0.8378 37 1 0.5057 -11.4437 0.9609 38 1 1.3412 -11.7217 2.5080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847412955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:13 Heat of formation + Delta-G solvation = -104.365575 kcal Electronic energy + Delta-G solvation = -18699.633313 eV Core-core repulsion = 15543.485570 eV Total energy + Delta-G solvation = -3156.147743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.01614 -39.10881 -36.75402 -34.17992 -34.15763 -32.57274 -31.84826 -30.26224 -27.66178 -25.18884 -23.93534 -23.64663 -21.25930 -20.54050 -19.78886 -18.56100 -17.13421 -16.73588 -16.43264 -16.00024 -15.39352 -15.10932 -14.93934 -14.41289 -14.14792 -13.72516 -13.45840 -13.35039 -13.15550 -12.54169 -12.27845 -11.89369 -11.76337 -11.58977 -11.49503 -11.35146 -10.82113 -10.79343 -10.62524 -10.50293 -10.04691 -9.69335 -9.68153 -9.30628 -9.02160 -8.94009 -8.31249 -5.96919 -3.98010 1.78354 2.91233 3.24097 3.35300 3.42595 3.48750 4.14986 4.24892 4.29761 4.42780 4.44462 4.50831 4.70902 4.89868 4.98612 5.09175 5.20890 5.28866 5.39528 5.41332 5.53035 5.58150 5.63330 5.65683 5.76833 6.16601 6.55784 6.71126 6.90529 6.91615 7.15794 7.38397 7.71679 7.83475 8.03817 8.45923 8.48228 9.09270 9.66047 11.14689 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.066567 B = 0.002835 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.530106 B = 9873.325625 C =10056.017897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.123 4.123 12 C 0.523 3.477 13 O -0.517 6.517 14 N -0.603 5.603 15 O -0.126 6.126 16 C 0.230 3.770 17 H 0.069 0.931 18 C -0.140 4.140 19 C -0.119 4.119 20 C -0.162 4.162 21 C 0.070 3.930 22 O -0.398 6.398 23 H 0.259 0.741 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.406 0.594 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 -26.893 -0.792 26.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.076 0.924 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.163 4.163 12 C 0.311 3.689 13 O -0.390 6.390 14 N -0.309 5.309 15 O -0.129 6.129 16 C 0.133 3.867 17 H 0.086 0.914 18 C -0.179 4.179 19 C -0.156 4.156 20 C -0.199 4.199 21 C -0.007 4.007 22 O -0.319 6.319 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.246 0.754 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.154 -26.453 -0.642 26.462 hybrid contribution -0.312 0.324 -0.147 0.473 sum -0.158 -26.129 -0.789 26.142 Atomic orbital electron populations 1.69971 1.06040 1.26448 1.51325 1.25021 0.94863 0.99286 0.95387 0.86528 0.80261 0.83704 0.77498 1.19654 1.21060 1.21045 1.21308 0.93286 0.90930 1.49996 0.92439 1.19143 0.93939 0.91333 0.97266 1.21515 0.98804 0.90952 1.02142 1.21857 0.97683 0.92436 1.04370 1.21653 0.91314 0.80772 0.75120 1.90713 1.17104 1.83355 1.47781 1.48150 1.04556 0.98429 1.79779 1.90671 1.18663 1.08301 1.95226 1.23324 0.96287 0.83193 0.83878 0.91390 1.22070 1.00398 0.93780 1.01694 1.21599 1.01440 0.95805 0.96779 1.22269 1.01856 0.99418 0.96390 1.22563 0.94371 0.81775 1.01977 1.87923 1.80676 1.35984 1.27320 0.93123 0.96469 0.96445 0.92349 0.92370 0.88790 0.88726 0.75399 0.89624 0.89569 0.90378 0.91405 0.90561 0.90332 0.92952 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 11 C -0.12 -2.01 5.70 -27.89 -0.16 -2.17 16 12 C 0.52 9.10 7.97 -10.99 -0.09 9.02 16 13 O -0.52 -11.46 16.39 -12.64 -0.21 -11.67 16 14 N -0.60 -8.42 6.37 31.22 0.20 -8.22 16 15 O -0.13 -1.89 11.00 -42.01 -0.46 -2.35 16 16 C 0.23 2.42 3.45 37.21 0.13 2.55 16 17 H 0.07 0.56 7.82 -51.93 -0.41 0.15 16 18 C -0.14 -1.17 5.79 -26.59 -0.15 -1.32 16 19 C -0.12 -0.67 6.03 -26.55 -0.16 -0.83 16 20 C -0.16 -0.91 6.14 -26.59 -0.16 -1.07 16 21 C 0.07 0.49 6.84 37.21 0.25 0.74 16 22 O -0.40 -4.50 10.66 -59.04 -0.63 -5.13 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 27 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.41 4.00 8.36 -40.82 -0.34 3.66 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -35.85 320.60 -7.77 -43.62 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -6.20 Total: -3.16 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.01 Total: -8.67 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.94 Total: -34.54 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.30 Total: -19.15 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.85 -7.77 -43.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847412955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.749 kcal (2) G-P(sol) polarization free energy of solvation -35.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds