Wall clock time and date at job start Mon Mar 30 2020 04:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00127 * 2 1 4 4 H 1.48504 * 109.47522 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47284 * 300.00294 * 3 2 1 6 6 H 1.48503 * 109.47278 * 60.00236 * 3 2 1 7 7 C 1.37882 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99624 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00177 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46967 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47206 * 180.02562 * 10 9 7 12 12 C 1.50689 * 109.47249 * 179.97438 * 11 10 9 13 13 O 1.21286 * 120.00136 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00235 * 179.97438 * 12 11 10 15 15 O 1.41600 * 120.00431 * 180.02562 * 14 12 11 16 16 C 1.42894 * 114.00146 * 180.02562 * 15 14 12 17 17 H 1.08992 * 109.48369 * 29.97117 * 16 15 14 18 18 C 1.53096 * 109.48180 * 149.99978 * 16 15 14 19 19 C 1.53178 * 109.16278 * 177.59001 * 18 16 15 20 20 C 1.53178 * 109.03511 * 303.01594 * 19 18 16 21 21 C 1.53093 * 109.16255 * 56.98447 * 20 19 18 22 22 O 1.42904 * 109.42351 * 302.38111 * 21 20 19 23 23 H 0.97000 * 119.99809 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46970 * 60.00321 * 9 7 2 25 25 H 1.09003 * 109.47008 * 299.99883 * 9 7 2 26 26 H 1.08997 * 109.46986 * 60.00364 * 10 9 7 27 27 H 1.09001 * 109.46779 * 300.00145 * 10 9 7 28 28 H 1.09002 * 109.47331 * 59.99587 * 11 10 9 29 29 H 1.09004 * 109.46989 * 300.00434 * 11 10 9 30 30 H 0.96996 * 119.99760 * 359.97438 * 14 12 11 31 31 H 1.08999 * 109.52155 * 57.68210 * 18 16 15 32 32 H 1.08996 * 109.57060 * 297.52468 * 18 16 15 33 33 H 1.09002 * 109.54068 * 183.15004 * 19 18 16 34 34 H 1.08996 * 109.54450 * 62.88578 * 19 18 16 35 35 H 1.09000 * 109.52619 * 297.07706 * 20 19 18 36 36 H 1.08998 * 109.51869 * 176.88944 * 20 19 18 37 37 H 1.09002 * 109.48198 * 62.37219 * 21 20 19 38 38 H 1.08999 * 109.48029 * 182.39833 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4803 -4.9872 -0.0025 12 6 2.4595 -6.1325 -0.0044 13 8 3.6519 -5.9109 -0.0047 14 7 2.0102 -7.4033 -0.0047 15 8 2.9304 -8.4796 -0.0059 16 6 2.3158 -9.7696 -0.0068 17 1 1.3557 -9.7146 -0.5196 18 6 3.2244 -10.7676 -0.7296 19 6 2.5873 -12.1594 -0.6737 20 6 2.3518 -12.5427 0.7905 21 6 1.4769 -11.4762 1.4547 22 8 2.1126 -10.2015 1.3405 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8877 27 1 2.8712 -3.6039 -0.8923 28 1 0.8531 -5.0443 -0.8922 29 1 0.8539 -5.0455 0.8877 30 1 1.0566 -7.5805 -0.0033 31 1 4.1986 -10.7930 -0.2414 32 1 3.3457 -10.4640 -1.7694 33 1 3.2553 -12.8851 -1.1377 34 1 1.6355 -12.1464 -1.2049 35 1 3.3083 -12.6040 1.3094 36 1 1.8482 -13.5082 0.8378 37 1 0.5057 -11.4437 0.9609 38 1 1.3412 -11.7217 2.5080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847412955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:12 Heat of formation + Delta-G solvation = -128.332687 kcal Electronic energy + Delta-G solvation = -18700.672605 eV Core-core repulsion = 15543.485570 eV Total energy + Delta-G solvation = -3157.187035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91514 -40.29634 -37.82773 -36.09783 -34.75630 -34.16512 -33.38887 -31.09375 -29.43884 -26.00207 -25.56065 -24.41975 -22.67276 -21.63993 -21.03098 -19.62274 -18.50551 -18.05230 -17.68012 -17.08910 -16.77141 -16.45697 -15.80184 -15.66919 -15.21047 -15.12125 -14.45407 -14.23689 -14.16593 -13.88700 -13.74704 -13.59621 -13.08383 -12.62855 -12.52951 -12.44414 -12.37501 -12.14146 -11.97684 -11.54870 -11.47987 -11.39191 -11.26108 -11.01543 -10.56943 -10.52389 -10.13293 -8.18934 -6.27951 0.70301 1.40580 1.41326 1.54928 1.55849 2.43016 2.53323 3.14470 3.37749 3.56965 3.66893 3.76107 3.90073 3.94616 4.12210 4.17904 4.26355 4.38413 4.56781 4.71195 4.76134 4.79146 4.95490 4.96902 5.03260 5.08742 5.09096 5.21453 5.28800 5.55461 5.59928 5.78129 5.89339 6.10546 6.27576 6.31666 6.87572 7.21889 7.40503 8.92758 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.066567 B = 0.002835 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.530106 B = 9873.325625 C =10056.017897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.085 4.085 11 C -0.112 4.112 12 C 0.526 3.474 13 O -0.575 6.575 14 N -0.584 5.584 15 O -0.159 6.159 16 C 0.223 3.777 17 H 0.096 0.904 18 C -0.140 4.140 19 C -0.113 4.113 20 C -0.159 4.159 21 C 0.061 3.939 22 O -0.429 6.429 23 H 0.265 0.735 24 H 0.007 0.993 25 H 0.005 0.995 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.427 0.573 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -28.228 -1.187 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.123 4.123 11 C -0.152 4.152 12 C 0.316 3.684 13 O -0.452 6.452 14 N -0.289 5.289 15 O -0.162 6.162 16 C 0.127 3.873 17 H 0.113 0.887 18 C -0.179 4.179 19 C -0.151 4.151 20 C -0.197 4.197 21 C -0.015 4.015 22 O -0.352 6.352 23 H 0.073 0.927 24 H 0.025 0.975 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.271 0.729 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.911 -27.843 -1.035 27.877 hybrid contribution -0.046 0.624 0.000 0.625 sum -0.957 -27.220 -1.035 27.256 Atomic orbital electron populations 1.70062 1.07390 1.27698 1.51730 1.25871 0.95824 1.02948 0.94775 0.85472 0.78872 0.79164 0.77992 1.19385 1.20047 1.20119 1.21725 0.93348 0.92867 1.50506 0.93178 1.19021 0.94137 0.91952 0.95975 1.21222 0.97857 0.92605 1.00654 1.21674 0.97061 0.89374 1.07056 1.21632 0.90418 0.81953 0.74436 1.90694 1.19300 1.84437 1.50768 1.47748 1.05558 0.97895 1.77737 1.90663 1.20221 1.09925 1.95429 1.23720 0.97836 0.81569 0.84206 0.88654 1.22135 0.99432 0.94959 1.01357 1.21626 1.02312 0.94038 0.97103 1.22264 1.01265 1.00104 0.96043 1.22855 0.95182 0.80450 1.03003 1.87871 1.81474 1.38095 1.27726 0.92664 0.97487 0.97668 0.94049 0.93765 0.85810 0.86230 0.72910 0.91512 0.89075 0.89102 0.89698 0.91854 0.87902 0.91029 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.72 4.44 30.60 0.14 -3.58 16 11 C -0.11 -3.52 5.70 29.84 0.17 -3.35 16 12 C 0.53 18.06 7.97 87.65 0.70 18.76 16 13 O -0.57 -26.03 16.39 14.34 0.24 -25.80 16 14 N -0.58 -15.53 6.37 -173.53 -1.11 -16.63 16 15 O -0.16 -4.69 11.00 -9.58 -0.11 -4.80 16 16 C 0.22 4.37 3.45 72.01 0.25 4.62 16 17 H 0.10 1.30 7.82 -2.39 -0.02 1.28 16 18 C -0.14 -2.16 5.79 30.69 0.18 -1.98 16 19 C -0.11 -0.99 6.03 30.71 0.19 -0.81 16 20 C -0.16 -1.43 6.14 30.68 0.19 -1.24 16 21 C 0.06 0.72 6.84 72.01 0.49 1.21 16 22 O -0.43 -9.22 10.66 -126.21 -1.35 -10.57 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 27 H 0.04 2.02 8.10 -2.39 -0.02 2.00 16 28 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.43 7.37 8.36 -92.71 -0.77 6.60 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -78.96 320.60 3.39 -75.56 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.26 Total: 6.59 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 3.14 Total: -16.02 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -0.82 Total: -72.33 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.22 Total: -41.16 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -78.96 3.39 -75.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847412955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.768 kcal (2) G-P(sol) polarization free energy of solvation -78.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds