Wall clock time and date at job start Mon Mar 30 2020 04:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39561 * 120.13825 * 175.34481 * 3 2 1 5 5 C 1.37950 * 119.85331 * 179.97438 * 4 3 2 6 6 C 1.38363 * 120.14276 * 359.72846 * 5 4 3 7 7 C 1.38324 * 120.28866 * 0.54475 * 6 5 4 8 8 C 1.50699 * 119.93190 * 179.72298 * 7 6 5 9 9 N 1.46497 * 109.47447 * 269.73141 * 8 7 6 10 10 C 1.34774 * 120.00288 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00338 * 179.97438 * 10 9 8 13 13 H 1.09003 * 109.46889 * 300.00448 * 12 10 9 14 14 C 1.53000 * 109.46939 * 59.99981 * 12 10 9 15 15 C 1.50694 * 109.47166 * 179.97438 * 12 10 9 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.37999 * 120.13593 * 359.45505 * 7 6 5 24 24 H 4.52087 * 14.02012 * 359.97438 * 4 2 1 25 25 H 1.08000 * 120.07123 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.92701 * 179.97438 * 5 4 3 27 27 H 1.08004 * 119.85701 * 180.27483 * 6 5 4 28 28 H 1.09002 * 109.46890 * 149.73133 * 8 7 6 29 29 H 1.09000 * 109.46737 * 29.73244 * 8 7 6 30 30 H 0.97006 * 119.99461 * 359.97438 * 9 8 7 31 31 H 1.09000 * 109.47156 * 59.99760 * 14 12 10 32 32 H 1.08997 * 109.47359 * 180.02562 * 14 12 10 33 33 H 1.09007 * 109.47356 * 300.00035 * 14 12 10 34 34 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 35 35 H 1.08007 * 120.06871 * 180.24586 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3062 1.2039 -0.0980 5 6 4.6857 1.1977 -0.0969 6 6 5.3751 0.0026 0.0067 7 6 4.6871 -1.1940 0.0984 8 6 5.4461 -2.4915 0.2046 9 7 5.6926 -3.0244 -1.1375 10 6 6.3596 -4.1856 -1.2896 11 8 6.7562 -4.7892 -0.3152 12 6 6.6128 -4.7340 -2.6702 13 1 5.6609 -4.9095 -3.1716 14 6 7.4356 -3.7269 -3.4761 15 6 7.3718 -6.0315 -2.5639 16 1 7.6435 -6.4204 -1.5937 17 6 7.7196 -6.7222 -3.7055 18 7 7.3884 -6.2490 -4.8870 19 14 8.6612 -8.3302 -3.5737 20 1 8.9105 -8.8707 -4.9342 21 1 9.9577 -8.0901 -2.8907 22 1 7.8633 -9.3083 -2.7915 23 6 3.3071 -1.2014 0.0985 24 1 -1.0500 -0.0011 -0.0004 25 1 2.7692 2.1378 -0.1744 26 1 5.2287 2.1282 -0.1730 27 1 6.4551 0.0035 0.0116 28 1 4.8600 -3.2093 0.7785 29 1 6.3977 -2.3157 0.7062 30 1 5.3751 -2.5418 -1.9168 31 1 8.3874 -3.5513 -2.9747 32 1 7.6183 -4.1233 -4.4748 33 1 6.8870 -2.7881 -3.5530 34 1 7.6334 -6.7348 -5.6900 35 1 2.7710 -2.1360 0.1741 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854886305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:57 Heat of formation + Delta-G solvation = 29.943172 kcal Electronic energy + Delta-G solvation = -17626.634513 eV Core-core repulsion = 14783.619754 eV Total energy + Delta-G solvation = -2843.014759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74392 -38.54167 -34.85003 -33.70885 -33.60718 -31.42112 -30.45465 -30.07625 -26.03639 -25.09495 -23.54895 -22.50116 -21.56832 -19.42281 -18.67017 -16.75888 -16.26394 -16.01635 -15.65940 -15.21141 -15.08312 -14.34041 -14.15673 -13.81540 -13.34153 -13.08372 -12.70819 -12.69261 -12.16102 -11.58541 -11.49492 -11.37535 -11.30928 -10.97818 -10.72325 -10.67041 -10.62701 -10.22529 -9.93948 -9.18816 -8.95700 -8.75077 -8.51657 -8.43162 -8.27420 -6.00504 -4.03656 0.74567 1.13044 2.52829 2.78545 3.38204 3.40412 3.46045 3.71525 3.75677 4.02591 4.18271 4.50990 4.62291 4.73356 4.92706 5.12411 5.23456 5.32670 5.36058 5.66065 5.73896 5.89929 5.91974 6.19890 6.24312 6.31370 6.45240 6.65161 6.72582 6.85816 6.95322 7.07497 7.30980 7.50600 7.78497 8.01605 8.17656 8.47408 9.05044 9.25875 9.61739 11.07076 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.033862 B = 0.003840 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.685952 B = 7290.138862 C = 7447.098859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.146 4.146 3 C 0.002 3.998 4 C -0.094 4.094 5 C -0.121 4.121 6 C -0.090 4.090 7 C -0.096 4.096 8 C 0.159 3.841 9 N -0.743 5.743 10 C 0.520 3.480 11 O -0.546 6.546 12 C 0.029 3.971 13 H 0.052 0.948 14 C -0.132 4.132 15 C -0.501 4.501 16 H 0.074 0.926 17 C 0.058 3.942 18 N -0.897 5.897 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.076 4.076 24 H 0.224 0.776 25 H 0.125 0.875 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.397 0.603 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.012 0.988 34 H 0.261 0.739 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 15.879 7.227 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C 0.002 3.998 4 C -0.112 4.112 5 C -0.139 4.139 6 C -0.109 4.109 7 C -0.096 4.096 8 C 0.035 3.965 9 N -0.398 5.398 10 C 0.309 3.691 11 O -0.422 6.422 12 C 0.008 3.992 13 H 0.070 0.930 14 C -0.190 4.190 15 C -0.540 4.540 16 H 0.092 0.908 17 C -0.143 4.143 18 N -0.537 5.537 19 Si 0.729 3.271 20 H -0.214 1.214 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.095 4.095 24 H 0.241 0.759 25 H 0.143 0.857 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.231 0.769 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.131 15.353 7.759 19.476 hybrid contribution 0.068 -0.500 -0.373 0.628 sum -9.064 14.853 7.386 18.903 Atomic orbital electron populations 1.24877 0.95769 0.99380 0.99745 1.20059 0.92046 1.01260 1.01192 1.15930 0.86574 0.93854 1.03435 1.21201 0.94246 0.96881 0.98869 1.21075 0.93779 0.98329 1.00681 1.21289 1.00499 0.91705 0.97401 1.19952 0.93368 0.95384 1.00933 1.20071 0.98903 0.90676 0.86815 1.46366 1.60680 1.25587 1.07157 1.22012 0.74710 0.78334 0.94010 1.90530 1.50647 1.58775 1.42277 1.18871 0.98209 0.95546 0.86536 0.92998 1.21738 0.98070 0.95094 1.04068 1.21116 1.34976 1.04178 0.93701 0.90832 1.24954 0.96068 0.98042 0.95192 1.69867 1.47299 1.39129 0.97370 0.86505 0.80425 0.83411 0.76785 1.21398 1.20201 1.20199 1.21183 0.93451 0.97252 0.97608 0.75939 0.85701 0.85325 0.85282 0.91208 0.91068 0.76906 0.95008 0.88872 0.96925 0.92934 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 19.25 29.55 0.57 -1.09 16 2 C -0.15 -1.66 13.24 -38.83 -0.51 -2.17 16 3 C 0.00 0.02 5.72 -107.00 -0.61 -0.59 16 4 C -0.09 -0.94 9.75 -39.19 -0.38 -1.32 16 5 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 6 C -0.09 -0.97 9.69 -39.50 -0.38 -1.35 16 7 C -0.10 -1.18 5.24 -104.68 -0.55 -1.73 16 8 C 0.16 2.36 5.80 -5.20 -0.03 2.33 16 9 N -0.74 -13.02 5.44 -61.48 -0.33 -13.36 16 10 C 0.52 11.91 7.15 -10.99 -0.08 11.83 16 11 O -0.55 -14.32 15.46 5.56 0.09 -14.24 16 12 C 0.03 0.74 2.64 -92.93 -0.25 0.49 16 13 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -3.04 8.86 37.16 0.33 -2.71 16 15 C -0.50 -14.36 8.37 -34.44 -0.29 -14.65 16 16 H 0.07 2.22 6.75 -52.49 -0.35 1.86 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.90 -25.36 11.32 55.43 0.63 -24.74 16 19 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.08 -0.93 9.40 -39.20 -0.37 -1.30 16 24 H 0.22 1.14 7.80 -54.09 -0.42 0.72 16 25 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 27 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.40 6.25 7.88 -40.82 -0.32 5.93 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 33 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -32.10 312.60 -7.29 -39.39 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.32 Total: 3.52 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -3.05 Total: -12.25 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.29 Total: -38.09 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.10 -7.29 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854886305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.333 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds