Wall clock time and date at job start Mon Mar 30 2020 04:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99929 * 2 1 4 4 H 1.48499 * 109.47286 * 270.00042 * 3 2 1 5 5 H 1.48498 * 109.47195 * 30.00172 * 3 2 1 6 6 H 1.48501 * 109.46923 * 150.00071 * 3 2 1 7 7 C 1.37879 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00026 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47416 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47486 * 180.02562 * 10 9 7 12 12 C 1.37483 * 120.00109 * 179.97438 * 11 10 9 13 13 N 1.30345 * 119.99894 * 359.97438 * 12 11 10 14 14 N 1.37478 * 120.00157 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00064 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46914 * 179.97438 * 15 14 12 17 17 H 1.08999 * 110.69935 * 56.68775 * 16 15 14 18 18 C 1.54257 * 110.78539 * 179.97438 * 16 15 14 19 19 C 1.52336 * 112.58746 * 142.99350 * 18 16 15 20 20 C 1.54255 * 112.58561 * 0.02562 * 19 18 16 21 21 S 1.83954 * 102.58369 * 335.47114 * 20 19 18 22 22 H 0.97005 * 120.00168 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47520 * 59.99848 * 9 7 2 24 24 H 1.09010 * 109.47179 * 300.00086 * 9 7 2 25 25 H 1.08994 * 109.47046 * 59.99504 * 10 9 7 26 26 H 1.09004 * 109.46541 * 300.00180 * 10 9 7 27 27 H 0.97002 * 120.00045 * 359.97438 * 11 10 9 28 28 H 0.96999 * 119.99928 * 0.02562 * 13 12 11 29 29 H 0.97002 * 119.99997 * 0.02562 * 14 12 11 30 30 H 1.08995 * 109.47016 * 60.00334 * 15 14 12 31 31 H 1.08996 * 109.47070 * 299.99981 * 15 14 12 32 32 H 1.08999 * 108.86709 * 22.17811 * 18 16 15 33 33 H 1.08998 * 108.87465 * 263.81688 * 18 16 15 34 34 H 1.09001 * 108.86684 * 120.82060 * 19 18 16 35 35 H 1.09003 * 108.86868 * 239.18353 * 19 18 16 36 36 H 1.09004 * 110.79068 * 93.74300 * 20 19 18 37 37 H 1.09000 * 110.78939 * 217.19335 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5114 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0014 11 7 5.4865 -2.6365 -0.0002 12 6 6.1739 -3.8272 -0.0006 13 7 5.5222 -4.9560 -0.0015 14 7 7.5487 -3.8272 0.0000 15 6 8.2812 -5.0959 0.0001 16 6 9.7854 -4.8163 0.0001 17 1 10.0619 -4.1953 0.8522 18 6 10.5872 -6.1342 0.0009 19 6 11.8510 -6.0507 -0.8456 20 6 12.0326 -4.6677 -1.5043 21 16 10.3089 -4.0294 -1.5778 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.6808 0.8905 24 1 3.8751 -0.6796 -0.8895 25 1 3.6585 -3.1494 -0.8920 26 1 3.6577 -3.1513 0.8880 27 1 5.9715 -1.7965 0.0009 28 1 4.5522 -4.9560 -0.0023 29 1 8.0337 -2.9872 0.0011 30 1 8.0182 -5.6673 -0.8901 31 1 8.0175 -5.6676 0.8899 32 1 9.9545 -6.9319 -0.3881 33 1 10.8652 -6.3771 1.0264 34 1 12.7139 -6.2549 -0.2117 35 1 11.8031 -6.8098 -1.6263 36 1 12.6575 -4.0236 -0.8857 37 1 12.4510 -4.7681 -2.5058 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905044644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:58 Heat of formation + Delta-G solvation = 15.653655 kcal Electronic energy + Delta-G solvation = -16392.256777 eV Core-core repulsion = 13716.359080 eV Total energy + Delta-G solvation = -2675.897697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.42544 -36.83525 -34.91904 -33.10357 -31.59474 -30.07625 -29.38947 -26.55166 -24.74556 -23.18022 -21.04103 -20.70431 -19.77123 -17.70898 -17.11380 -16.72106 -16.17344 -15.43357 -15.06710 -14.54223 -14.41789 -14.23386 -13.96800 -13.62518 -13.36993 -12.80286 -12.60542 -12.21153 -11.94462 -11.84304 -11.58386 -11.46613 -11.03860 -10.90519 -10.31420 -10.13671 -10.09925 -9.94076 -9.38803 -8.94323 -8.63168 -8.35578 -7.97894 -7.59381 -6.12446 -4.12670 1.50821 1.98884 3.06308 3.25502 3.33177 3.34729 3.53084 4.08565 4.29109 4.37286 4.42013 4.45701 4.69277 4.79229 4.84879 5.09330 5.20870 5.24980 5.47040 5.53280 5.60619 5.68376 5.85951 5.92884 6.12833 6.15061 6.50463 6.82909 7.08558 7.21986 7.34344 7.61816 7.69590 8.37189 8.48534 8.90926 9.22520 9.47972 11.00506 Molecular weight = 257.13amu Principal moments of inertia in cm(-1) A = 0.043009 B = 0.003311 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.870480 B = 8454.420529 C = 8936.451066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.075 0.925 9 C -0.018 4.018 10 C 0.143 3.857 11 N -0.772 5.772 12 C 0.633 3.367 13 N -0.840 5.840 14 N -0.733 5.733 15 C 0.175 3.825 16 C -0.051 4.051 17 H 0.099 0.901 18 C -0.120 4.120 19 C -0.124 4.124 20 C -0.073 4.073 21 S -0.282 6.282 22 H 0.265 0.735 23 H 0.021 0.979 24 H 0.017 0.983 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.385 0.615 28 H 0.341 0.659 29 H 0.400 0.600 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.006 -9.620 0.004 27.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.093 0.907 9 C -0.056 4.056 10 C 0.019 3.981 11 N -0.416 5.416 12 C 0.265 3.735 13 N -0.491 5.491 14 N -0.377 5.377 15 C 0.049 3.951 16 C -0.180 4.180 17 H 0.117 0.883 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.222 4.222 21 S -0.055 6.055 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.217 0.783 28 H 0.158 0.842 29 H 0.234 0.766 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 25.406 -10.008 -0.814 27.318 hybrid contribution 0.615 1.766 0.778 2.025 sum 26.021 -8.242 -0.036 27.295 Atomic orbital electron populations 1.69900 1.06287 1.27089 1.50370 1.24992 0.94764 0.99173 0.94310 0.86744 0.80246 0.83504 0.78541 1.20205 1.21258 1.19114 1.20913 0.88642 0.94873 1.51798 0.90664 1.19718 0.97773 0.91200 0.96865 1.21332 0.75842 1.00674 1.00239 1.45803 1.07502 1.05909 1.82382 1.18738 0.83788 0.83376 0.87569 1.69539 1.15289 1.22302 1.41983 1.43654 1.01623 1.08130 1.84310 1.20877 0.85096 0.85947 1.03187 1.24273 0.98636 0.98487 0.96585 0.88257 1.22010 0.95794 0.96802 1.01401 1.21989 0.98012 0.96673 0.99643 1.24151 0.95482 0.97996 1.04526 1.88379 1.13055 1.71515 1.32595 0.92528 0.96029 0.96445 0.92788 0.92779 0.78255 0.84190 0.76573 0.90729 0.90594 0.89868 0.90398 0.90779 0.90485 0.89419 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 9 C -0.02 -0.41 4.15 -27.89 -0.12 -0.53 16 10 C 0.14 2.86 4.96 -4.04 -0.02 2.84 16 11 N -0.77 -13.11 5.67 -61.79 -0.35 -13.46 16 12 C 0.63 10.44 8.71 -320.09 -2.79 7.65 16 13 N -0.84 -15.23 13.21 30.15 0.40 -14.83 16 14 N -0.73 -9.45 5.52 -61.79 -0.34 -9.79 16 15 C 0.17 1.93 5.01 -4.04 -0.02 1.91 16 16 C -0.05 -0.42 3.35 -26.07 -0.09 -0.51 16 17 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.12 -0.75 5.93 -26.41 -0.16 -0.91 16 19 C -0.12 -0.67 6.30 -26.41 -0.17 -0.83 16 20 C -0.07 -0.47 7.46 37.81 0.28 -0.19 16 21 S -0.28 -2.79 22.50 -107.50 -2.42 -5.21 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 24 H 0.02 0.40 7.57 -51.92 -0.39 0.00 16 25 H 0.05 1.12 7.97 -51.93 -0.41 0.71 16 26 H 0.05 1.11 7.97 -51.93 -0.41 0.70 16 27 H 0.39 5.89 8.57 -40.82 -0.35 5.54 16 28 H 0.34 6.43 7.15 -40.82 -0.29 6.13 16 29 H 0.40 4.55 8.47 -40.82 -0.35 4.20 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.54 7.78 -51.93 -0.40 0.14 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -31.38 314.20 -11.33 -42.71 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.95 Total: 9.49 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.50 Total: -3.68 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 0.48 Total: -64.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.42 Total: -5.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.38 -11.33 -42.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905044644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.366 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds