Wall clock time and date at job start Mon Mar 30 2020 04:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99745 * 2 1 4 4 H 1.48500 * 109.47032 * 269.99518 * 3 2 1 5 5 H 1.48495 * 109.47368 * 30.00194 * 3 2 1 6 6 H 1.48506 * 109.46809 * 150.00241 * 3 2 1 7 7 C 1.37876 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47086 * 180.02562 * 9 7 2 11 11 N 1.36608 * 119.99978 * 269.99860 * 10 9 7 12 12 C 1.34774 * 120.00194 * 89.99703 * 10 9 7 13 13 S 1.71195 * 120.00084 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00134 * 179.97438 * 12 10 9 15 15 C 1.46506 * 120.00033 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47289 * 275.00400 * 15 14 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47518 * 59.99828 * 17 16 15 19 19 C 1.53005 * 109.46632 * 300.00318 * 18 17 16 20 20 C 1.52996 * 109.47571 * 60.00168 * 19 18 17 21 21 H 0.96996 * 119.99848 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47777 * 60.00019 * 9 7 2 23 23 H 1.09003 * 109.47311 * 299.99395 * 9 7 2 24 24 H 1.00891 * 110.99729 * 359.97438 * 11 10 9 25 25 H 1.00901 * 110.99618 * 123.95476 * 11 10 9 26 26 H 0.97000 * 120.00155 * 0.02562 * 14 12 10 27 27 H 1.09001 * 109.47060 * 35.00669 * 15 14 12 28 28 H 1.09001 * 109.46832 * 299.99854 * 16 15 14 29 29 H 1.08996 * 109.46952 * 59.99873 * 16 15 14 30 30 H 1.09001 * 109.46997 * 299.99574 * 17 16 15 31 31 H 1.09004 * 109.47552 * 179.97438 * 17 16 15 32 32 H 1.08992 * 109.47399 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.47194 * 59.99866 * 18 17 16 34 34 H 1.09001 * 109.47420 * 299.99415 * 19 18 17 35 35 H 1.09004 * 109.46832 * 179.97438 * 19 18 17 36 36 H 1.08992 * 109.47346 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47364 * 59.99212 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 7 2.6478 -4.1312 -1.1844 12 6 2.6402 -4.1253 1.1658 13 16 2.0824 -3.4758 2.6483 14 7 3.5156 -5.1500 1.1660 15 6 3.9911 -5.7070 2.4349 16 6 5.1785 -4.8846 2.9398 17 6 5.6754 -5.4667 4.2645 18 6 6.1132 -6.9172 4.0521 19 6 4.9258 -7.7395 3.5472 20 6 4.4289 -7.1576 2.2224 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 2.2355 -3.6485 -1.9685 25 1 3.6554 -4.1072 -1.2337 26 1 3.8314 -5.5183 0.3261 27 1 3.1872 -5.6738 3.1703 28 1 5.9823 -4.9180 2.2044 29 1 4.8667 -3.8512 3.0907 30 1 4.8717 -5.4337 5.0001 31 1 6.5216 -4.8811 4.6241 32 1 6.4668 -7.3320 4.9960 33 1 6.9170 -6.9502 3.3165 34 1 4.1220 -7.7066 4.2827 35 1 5.2378 -8.7729 3.3954 36 1 3.5827 -7.7431 1.8630 37 1 5.2326 -7.1904 1.4868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088678858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:15 Heat of formation + Delta-G solvation = 21.827625 kcal Electronic energy + Delta-G solvation = -17530.963467 eV Core-core repulsion = 14855.333494 eV Total energy + Delta-G solvation = -2675.629973 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.47284 -38.11007 -34.88714 -32.86803 -30.79488 -30.34660 -29.40477 -26.82475 -23.62741 -22.73284 -21.91733 -21.54245 -19.88749 -18.02172 -17.13986 -16.55894 -15.66533 -14.94381 -14.87971 -14.47618 -14.38682 -14.10841 -14.00752 -13.24675 -12.69718 -12.67078 -12.20150 -11.91512 -11.61316 -11.23225 -11.18176 -10.97775 -10.80943 -10.66636 -10.62547 -10.30103 -10.24865 -10.16693 -9.87349 -9.57291 -8.53556 -7.86542 -6.75000 -6.34058 -6.12265 -4.19510 2.26396 2.73787 3.25235 3.34065 3.36434 3.43059 3.58009 4.37202 4.67321 4.72334 4.87815 5.13718 5.21926 5.26058 5.39045 5.42438 5.49748 5.53595 5.61008 5.74215 5.97074 6.02511 6.08086 6.15230 6.23187 6.36977 6.43301 6.54864 6.77000 7.00862 7.26102 7.48549 7.67748 7.85152 8.00840 8.41683 8.79388 9.44609 10.94578 Molecular weight = 257.13amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.005437 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.943041 B = 5148.238378 C = 5479.379600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.230 3.770 10 N -0.395 5.395 11 N -0.619 5.619 12 C 0.567 3.433 13 S -0.653 6.653 14 N -0.695 5.695 15 C 0.151 3.849 16 C -0.129 4.129 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.126 4.126 21 H 0.266 0.734 22 H 0.040 0.960 23 H 0.088 0.912 24 H 0.373 0.627 25 H 0.328 0.672 26 H 0.393 0.607 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.207 -14.134 1.058 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.208 1.208 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.111 3.889 10 N -0.190 5.190 11 N -0.245 5.245 12 C 0.206 3.794 13 S -0.528 6.528 14 N -0.328 5.328 15 C 0.046 3.954 16 C -0.168 4.168 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.164 4.164 21 H 0.076 0.924 22 H 0.057 0.943 23 H 0.106 0.894 24 H 0.190 0.810 25 H 0.143 0.857 26 H 0.229 0.771 27 H 0.130 0.870 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.279 -14.229 2.138 17.683 hybrid contribution 1.406 1.459 -1.693 2.640 sum 11.685 -12.770 0.445 17.315 Atomic orbital electron populations 1.69914 1.05951 1.27339 1.49166 1.24819 0.94855 0.99076 0.94512 0.86446 0.79989 0.82917 0.77789 1.20824 1.20803 1.19820 1.21103 0.92883 0.90041 1.52823 0.92830 1.20252 0.87185 0.80266 1.01213 1.46999 1.41444 1.32105 0.98420 1.60420 1.11894 1.55106 0.97123 1.21994 0.83384 0.83516 0.90505 1.93108 1.73567 1.72576 1.13511 1.44830 1.44582 1.33385 1.09969 1.21248 0.97806 0.91082 0.85311 1.21915 0.96627 1.01611 0.96690 1.21457 1.00950 0.95176 0.97610 1.21584 0.97679 0.95801 1.00784 1.21453 0.98389 0.98670 0.96602 1.21810 1.00990 0.95235 0.98359 0.92448 0.94268 0.89418 0.81033 0.85721 0.77105 0.87010 0.92860 0.89815 0.91295 0.92001 0.92088 0.92262 0.91380 0.91838 0.91423 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 16 8 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 9 C 0.23 5.76 4.97 -5.20 -0.03 5.74 16 10 N -0.39 -8.05 3.37 -63.22 -0.21 -8.26 16 11 N -0.62 -9.50 9.53 60.35 0.58 -8.92 16 12 C 0.57 11.54 7.74 -86.92 -0.67 10.87 16 13 S -0.65 -16.02 25.98 -107.50 -2.79 -18.81 16 14 N -0.69 -10.65 5.01 -55.52 -0.28 -10.93 16 15 C 0.15 2.06 2.22 -67.93 -0.15 1.91 16 16 C -0.13 -1.74 5.44 -26.73 -0.15 -1.89 16 17 C -0.11 -1.26 5.92 -26.73 -0.16 -1.42 16 18 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 19 C -0.11 -1.01 5.92 -26.73 -0.16 -1.17 16 20 C -0.13 -1.28 5.39 -26.73 -0.14 -1.42 16 21 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 22 H 0.04 0.99 7.91 -51.93 -0.41 0.58 16 23 H 0.09 2.51 6.58 -51.93 -0.34 2.17 16 24 H 0.37 5.50 8.52 -181.37 -1.55 3.95 16 25 H 0.33 4.27 8.50 -181.36 -1.54 2.73 16 26 H 0.39 5.05 7.27 -40.82 -0.30 4.76 16 27 H 0.11 1.83 6.81 -51.93 -0.35 1.48 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.43 7.49 -51.93 -0.39 1.04 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 308.90 15.07 4.66 4.66 Total: -1.00 -31.76 308.90 -12.60 -44.36 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.23 Total: 7.69 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.03 Total: -1.46 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.82 Total: -53.05 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -16.02 SS G_CDS: -2.79 Total: -18.81 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.76 -12.60 -44.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088678858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.191 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds