Wall clock time and date at job start Mon Mar 30 2020 04:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99745 * 2 1 4 4 H 1.48500 * 109.47032 * 269.99518 * 3 2 1 5 5 H 1.48495 * 109.47368 * 30.00194 * 3 2 1 6 6 H 1.48506 * 109.46809 * 150.00241 * 3 2 1 7 7 C 1.37876 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47086 * 180.02562 * 9 7 2 11 11 N 1.36608 * 119.99978 * 269.99860 * 10 9 7 12 12 C 1.34774 * 120.00194 * 89.99703 * 10 9 7 13 13 S 1.71195 * 120.00084 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00134 * 179.97438 * 12 10 9 15 15 C 1.46506 * 120.00033 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47289 * 275.00400 * 15 14 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47518 * 59.99828 * 17 16 15 19 19 C 1.53005 * 109.46632 * 300.00318 * 18 17 16 20 20 C 1.52996 * 109.47571 * 60.00168 * 19 18 17 21 21 H 0.96996 * 119.99848 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47777 * 60.00019 * 9 7 2 23 23 H 1.09003 * 109.47311 * 299.99395 * 9 7 2 24 24 H 1.00891 * 110.99729 * 359.97438 * 11 10 9 25 25 H 1.00901 * 110.99618 * 123.95476 * 11 10 9 26 26 H 0.97000 * 120.00155 * 0.02562 * 14 12 10 27 27 H 1.09001 * 109.47060 * 35.00669 * 15 14 12 28 28 H 1.09001 * 109.46832 * 299.99854 * 16 15 14 29 29 H 1.08996 * 109.46952 * 59.99873 * 16 15 14 30 30 H 1.09001 * 109.46997 * 299.99574 * 17 16 15 31 31 H 1.09004 * 109.47552 * 179.97438 * 17 16 15 32 32 H 1.08992 * 109.47399 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.47194 * 59.99866 * 18 17 16 34 34 H 1.09001 * 109.47420 * 299.99415 * 19 18 17 35 35 H 1.09004 * 109.46832 * 179.97438 * 19 18 17 36 36 H 1.08992 * 109.47346 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47364 * 59.99212 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 7 2.6478 -4.1312 -1.1844 12 6 2.6402 -4.1253 1.1658 13 16 2.0824 -3.4758 2.6483 14 7 3.5156 -5.1500 1.1660 15 6 3.9911 -5.7070 2.4349 16 6 5.1785 -4.8846 2.9398 17 6 5.6754 -5.4667 4.2645 18 6 6.1132 -6.9172 4.0521 19 6 4.9258 -7.7395 3.5472 20 6 4.4289 -7.1576 2.2224 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 2.2355 -3.6485 -1.9685 25 1 3.6554 -4.1072 -1.2337 26 1 3.8314 -5.5183 0.3261 27 1 3.1872 -5.6738 3.1703 28 1 5.9823 -4.9180 2.2044 29 1 4.8667 -3.8512 3.0907 30 1 4.8717 -5.4337 5.0001 31 1 6.5216 -4.8811 4.6241 32 1 6.4668 -7.3320 4.9960 33 1 6.9170 -6.9502 3.3165 34 1 4.1220 -7.7066 4.2827 35 1 5.2378 -8.7729 3.3954 36 1 3.5827 -7.7431 1.8630 37 1 5.2326 -7.1904 1.4868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088678858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:14 Heat of formation + Delta-G solvation = 1.580989 kcal Electronic energy + Delta-G solvation = -17531.841427 eV Core-core repulsion = 14855.333494 eV Total energy + Delta-G solvation = -2676.507933 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.86774 -39.37254 -36.21789 -34.88881 -31.87348 -31.64244 -30.81837 -28.54735 -25.44679 -23.81702 -23.11065 -22.98438 -20.89174 -19.44748 -18.92039 -18.39355 -17.01569 -16.58658 -16.30006 -16.17666 -15.58930 -15.29493 -14.96508 -14.68620 -14.17566 -13.76898 -13.56322 -13.35963 -13.09456 -12.94611 -12.69192 -12.42034 -12.24713 -12.06081 -12.04857 -11.78795 -11.50772 -11.45691 -11.18941 -10.96750 -10.66436 -9.39953 -8.63046 -8.28463 -8.21078 -6.38696 0.59375 1.04350 1.34683 1.40028 1.48443 1.70920 2.20355 2.36778 3.07793 3.74945 3.84292 3.95266 4.12036 4.26159 4.34549 4.51758 4.57597 4.60121 4.72002 4.77502 4.88604 4.98941 5.07241 5.15960 5.25283 5.27130 5.30940 5.38230 5.45136 5.53394 5.60114 5.67492 5.89541 6.02503 6.26665 6.64677 6.88540 7.29415 8.82146 Molecular weight = 257.13amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.005437 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.943041 B = 5148.238378 C = 5479.379600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.247 3.753 10 N -0.398 5.398 11 N -0.600 5.600 12 C 0.583 3.417 13 S -0.745 6.745 14 N -0.665 5.665 15 C 0.147 3.853 16 C -0.124 4.124 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.116 4.116 21 H 0.268 0.732 22 H 0.038 0.962 23 H 0.047 0.953 24 H 0.381 0.619 25 H 0.349 0.651 26 H 0.411 0.589 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.671 -15.716 -0.328 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.126 3.874 10 N -0.191 5.191 11 N -0.229 5.229 12 C 0.217 3.783 13 S -0.622 6.622 14 N -0.297 5.297 15 C 0.043 3.957 16 C -0.163 4.163 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.154 4.154 21 H 0.077 0.923 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.199 0.801 25 H 0.165 0.835 26 H 0.251 0.749 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.793 -15.864 0.723 20.393 hybrid contribution 0.691 1.848 -1.317 2.372 sum 13.483 -14.017 -0.594 19.458 Atomic orbital electron populations 1.70019 1.07333 1.28246 1.50137 1.25634 0.95641 1.02456 0.94187 0.85468 0.78195 0.78851 0.78575 1.18761 1.20806 1.20358 1.21282 0.92586 0.91136 1.52348 0.93449 1.19701 0.87423 0.81191 0.99118 1.46568 1.41167 1.31251 1.00135 1.60419 1.13357 1.53883 0.95241 1.21387 0.83891 0.84260 0.88783 1.93274 1.76498 1.75330 1.17066 1.44851 1.42073 1.30965 1.11794 1.21437 0.96949 0.93673 0.83689 1.21827 0.96755 0.99143 0.98545 1.21446 1.00602 0.97205 0.95761 1.21558 0.97928 0.93658 1.02070 1.21483 0.98100 0.99930 0.95487 1.21789 1.01843 0.91920 0.99868 0.92284 0.94406 0.93470 0.80141 0.83499 0.74904 0.90069 0.91201 0.94181 0.92895 0.91334 0.90577 0.90889 0.92349 0.89286 0.91046 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.09 13.29 21.45 0.28 -53.80 16 2 C 0.02 1.20 5.46 84.65 0.46 1.66 16 3 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.53 -29.32 9.39 25.60 0.24 -29.08 16 8 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 9 C 0.25 12.62 4.97 85.63 0.43 13.05 16 10 N -0.40 -16.09 3.37 -353.93 -1.19 -17.28 16 11 N -0.60 -17.09 9.53 37.02 0.35 -16.74 16 12 C 0.58 23.81 7.74 179.05 1.39 25.20 16 13 S -0.75 -38.49 25.98 -56.49 -1.47 -39.96 16 14 N -0.66 -19.48 5.01 -329.56 -1.65 -21.13 16 15 C 0.15 3.89 2.22 44.99 0.10 3.99 16 16 C -0.12 -3.25 5.44 30.59 0.17 -3.08 16 17 C -0.11 -2.38 5.92 30.59 0.18 -2.19 16 18 C -0.11 -1.70 5.92 30.60 0.18 -1.52 16 19 C -0.11 -1.66 5.92 30.59 0.18 -1.48 16 20 C -0.12 -2.01 5.39 30.59 0.16 -1.84 16 21 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 22 H 0.04 1.93 7.91 -2.39 -0.02 1.92 16 23 H 0.05 2.83 6.58 -2.39 -0.02 2.81 16 24 H 0.38 10.38 8.52 -210.56 -1.80 8.58 16 25 H 0.35 7.94 8.50 -210.55 -1.79 6.15 16 26 H 0.41 9.30 7.27 -92.71 -0.67 8.63 16 27 H 0.08 2.74 6.81 -2.39 -0.02 2.73 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.41 7.49 -2.39 -0.02 1.40 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -72.23 308.90 -1.33 -73.57 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -3.18 Total: 24.15 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 3.49 Total: 4.70 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -2.21 Total: -108.95 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -38.49 SS G_CDS: -1.47 Total: -39.96 kcal Total: -72.23 -1.33 -73.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088678858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.147 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds