Wall clock time and date at job start Mon Mar 30 2020 04:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47014 * 111.00079 * 2 1 4 4 C 1.53092 * 109.25682 * 177.60407 * 3 2 1 5 5 O 1.43021 * 109.29765 * 56.82810 * 4 3 2 6 6 C 1.43015 * 113.73137 * 301.39813 * 5 4 3 7 7 H 1.09000 * 109.50745 * 298.63686 * 6 5 4 8 8 C 1.53002 * 109.50509 * 178.55212 * 6 5 4 9 9 N 1.46903 * 109.46967 * 65.08806 * 8 6 5 10 10 C 1.46896 * 110.99955 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.46942 * 179.97438 * 10 9 8 12 12 O 1.21293 * 120.00282 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.37104 * 120.00173 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99666 * 359.97438 * 14 13 11 16 16 C 1.38945 * 120.00001 * 180.27893 * 14 13 11 17 17 N 1.31414 * 119.99893 * 359.72318 * 16 14 13 18 18 Si 1.86801 * 119.99957 * 179.72309 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46780 * 119.99924 * 18 16 14 21 21 H 1.48495 * 109.46909 * 239.99525 * 18 16 14 22 22 C 1.47007 * 111.00373 * 236.36227 * 2 1 3 23 23 H 1.09001 * 109.46912 * 183.63606 * 1 2 3 24 24 H 1.09000 * 109.47149 * 303.63794 * 1 2 3 25 25 H 1.08998 * 109.46801 * 63.63625 * 1 2 3 26 26 H 1.08993 * 109.50600 * 297.53932 * 3 2 1 27 27 H 1.08997 * 109.50607 * 57.62697 * 3 2 1 28 28 H 1.09006 * 109.50767 * 176.77979 * 4 3 2 29 29 H 1.09000 * 109.51118 * 296.91365 * 4 3 2 30 30 H 1.08999 * 109.47423 * 305.09073 * 8 6 5 31 31 H 1.08991 * 109.47394 * 185.08448 * 8 6 5 32 32 H 1.00907 * 111.00029 * 303.95634 * 9 8 6 33 33 H 1.08994 * 109.47346 * 60.00149 * 10 9 8 34 34 H 1.08998 * 109.47279 * 299.99821 * 10 9 8 35 35 H 0.97000 * 120.00140 * 0.02562 * 13 11 10 36 36 H 0.97004 * 119.99542 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.50777 * 62.45786 * 22 2 1 38 38 H 1.09001 * 109.54567 * 302.34933 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3263 0.0604 5 8 4.0184 0.5570 -1.0396 6 6 3.5250 -0.7850 -1.0707 7 1 3.8386 -1.3091 -0.1679 8 6 4.0826 -1.5059 -2.2997 9 7 5.5406 -1.6330 -2.1732 10 6 6.1121 -2.3215 -3.3382 11 6 7.6059 -2.4324 -3.1733 12 8 8.1419 -1.9819 -2.1829 13 7 8.3464 -3.0323 -4.1263 14 6 9.7054 -3.1338 -3.9760 15 1 10.1826 -2.7325 -3.0941 16 6 10.4695 -3.7470 -4.9612 17 7 9.8889 -4.2347 -6.0346 18 14 12.3220 -3.8783 -4.7600 19 1 12.7256 -3.2559 -3.4737 20 1 12.7202 -5.3090 -4.7647 21 1 12.9928 -3.1742 -5.8822 22 6 1.9959 -0.7602 -1.1426 23 1 -0.3633 -1.0256 0.0652 24 1 -0.3633 0.5693 0.8556 25 1 -0.3633 0.4564 -0.9208 26 1 1.6828 1.8825 -0.9110 27 1 1.6127 1.9094 0.8677 28 1 3.9222 2.3398 0.0030 29 1 3.8385 0.8643 0.9965 30 1 3.8443 -0.9334 -3.1961 31 1 3.6365 -2.4976 -2.3727 32 1 5.9720 -0.7307 -2.0392 33 1 5.8878 -1.7543 -4.2415 34 1 5.6800 -3.3189 -3.4189 35 1 7.9179 -3.3923 -4.9186 36 1 10.4223 -4.6632 -6.7222 37 1 1.6829 -0.2843 -2.0719 38 1 1.6135 -1.7804 -1.1094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082618979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:47 Heat of formation + Delta-G solvation = -73.000607 kcal Electronic energy + Delta-G solvation = -19028.620036 eV Core-core repulsion = 15906.125131 eV Total energy + Delta-G solvation = -3122.494905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.83553 -38.18582 -36.10026 -35.16986 -33.80139 -31.73312 -31.12141 -29.17477 -27.45938 -25.24055 -24.34129 -23.52913 -21.78186 -20.57826 -19.17345 -17.83940 -16.66762 -16.50438 -16.14586 -15.50413 -15.29396 -15.09823 -14.69384 -14.45167 -14.18811 -13.89288 -13.36833 -13.32060 -12.98048 -12.59480 -12.35292 -12.13922 -11.74749 -11.60459 -11.52067 -11.36578 -11.19208 -11.01506 -10.60896 -10.30649 -10.17898 -9.72252 -9.47266 -8.71301 -8.39240 -7.98410 -7.90299 -6.37318 -3.77778 3.19802 3.29898 3.37638 3.47788 3.67631 3.97043 4.14148 4.34079 4.68905 4.73286 4.86570 4.95990 5.03441 5.14218 5.19410 5.21343 5.27963 5.30651 5.40359 5.47876 5.50735 5.53893 5.64361 5.81740 5.87533 5.99944 6.04727 6.32621 6.60930 6.61504 7.11010 7.29488 7.59939 7.79211 8.11900 8.66777 9.22971 9.59769 10.11685 10.80719 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.060910 B = 0.003212 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.584956 B = 8714.652233 C = 9027.117124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.017 3.983 4 C 0.065 3.935 5 O -0.379 6.379 6 C 0.095 3.905 7 H 0.079 0.921 8 C 0.069 3.931 9 N -0.666 5.666 10 C 0.050 3.950 11 C 0.443 3.557 12 O -0.581 6.581 13 N -0.566 5.566 14 C -0.297 4.297 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.025 3.975 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.026 0.974 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.357 0.643 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.270 0.730 37 H 0.042 0.958 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.809 7.806 7.142 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.012 4.012 5 O -0.297 6.297 6 C 0.037 3.963 7 H 0.097 0.903 8 C -0.061 4.061 9 N -0.299 5.299 10 C -0.083 4.083 11 C 0.228 3.772 12 O -0.465 6.465 13 N -0.203 5.203 14 C -0.427 4.427 15 H 0.121 0.879 16 C -0.181 4.181 17 N -0.545 5.545 18 Si 0.757 3.243 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.104 4.104 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.097 7.292 8.324 21.212 hybrid contribution -0.035 0.640 -1.770 1.882 sum -18.132 7.932 6.554 20.848 Atomic orbital electron populations 1.22381 0.86920 1.02472 1.00544 1.62175 1.08131 1.13694 1.42687 1.22834 0.97098 0.89711 1.01513 1.22615 0.91530 0.96549 0.90524 1.88002 1.69922 1.23642 1.48177 1.22223 0.90681 0.83452 0.99935 0.90267 1.21920 0.90015 0.99196 0.95003 1.60080 1.01960 1.27803 1.40082 1.21677 0.95084 0.99800 0.91718 1.19818 0.87772 0.84353 0.85259 1.90528 1.73029 1.52232 1.30703 1.41871 1.07603 1.51271 1.19536 1.19762 0.81829 1.35123 1.05938 0.87877 1.25258 1.00667 0.96928 0.95207 1.69627 1.36612 1.39215 1.09041 0.85799 0.82234 0.77874 0.78438 1.19209 1.20772 1.20819 1.22784 0.96275 0.99453 0.91867 0.91081 0.91240 0.95584 0.94063 0.89737 0.88443 0.92086 0.94863 0.89707 0.82232 0.93897 0.89629 0.77479 0.91991 0.93957 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.60 60.06 0.58 0.76 16 2 N -0.54 -5.31 4.98 -242.61 -1.21 -6.52 16 3 C 0.02 0.15 5.66 -3.71 -0.02 0.13 16 4 C 0.07 0.68 7.01 37.20 0.26 0.94 16 5 O -0.38 -5.16 10.00 -35.23 -0.35 -5.51 16 6 C 0.10 1.20 3.04 -26.68 -0.08 1.12 16 7 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 8 C 0.07 0.92 5.39 -3.82 -0.02 0.90 16 9 N -0.67 -11.69 6.13 -115.06 -0.71 -12.39 16 10 C 0.05 0.93 6.17 -4.98 -0.03 0.89 16 11 C 0.44 10.86 7.82 -10.98 -0.09 10.77 16 12 O -0.58 -16.41 15.78 5.55 0.09 -16.32 16 13 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 14 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 15 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 16 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 17 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 18 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.02 0.25 4.95 -3.71 -0.02 0.24 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.36 6.80 7.99 -39.29 -0.31 6.49 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -32.40 316.26 -7.50 -39.89 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.07 Total: 11.16 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 0.34 Total: 7.60 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -1.25 Total: -57.97 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.26 Total: -21.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.40 -7.50 -39.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082618979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.109 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds