Wall clock time and date at job start Mon Mar 30 2020 04:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47014 * 111.00079 * 2 1 4 4 C 1.53092 * 109.25682 * 177.60407 * 3 2 1 5 5 O 1.43021 * 109.29765 * 56.82810 * 4 3 2 6 6 C 1.43015 * 113.73137 * 301.39813 * 5 4 3 7 7 H 1.09000 * 109.50745 * 298.63686 * 6 5 4 8 8 C 1.53002 * 109.50509 * 178.55212 * 6 5 4 9 9 N 1.46903 * 109.46967 * 65.08806 * 8 6 5 10 10 C 1.46896 * 110.99955 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.46942 * 179.97438 * 10 9 8 12 12 O 1.21293 * 120.00282 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.37104 * 120.00173 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99666 * 359.97438 * 14 13 11 16 16 C 1.38945 * 120.00001 * 180.27893 * 14 13 11 17 17 N 1.31414 * 119.99893 * 359.72318 * 16 14 13 18 18 Si 1.86801 * 119.99957 * 179.72309 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46780 * 119.99924 * 18 16 14 21 21 H 1.48495 * 109.46909 * 239.99525 * 18 16 14 22 22 C 1.47007 * 111.00373 * 236.36227 * 2 1 3 23 23 H 1.09001 * 109.46912 * 183.63606 * 1 2 3 24 24 H 1.09000 * 109.47149 * 303.63794 * 1 2 3 25 25 H 1.08998 * 109.46801 * 63.63625 * 1 2 3 26 26 H 1.08993 * 109.50600 * 297.53932 * 3 2 1 27 27 H 1.08997 * 109.50607 * 57.62697 * 3 2 1 28 28 H 1.09006 * 109.50767 * 176.77979 * 4 3 2 29 29 H 1.09000 * 109.51118 * 296.91365 * 4 3 2 30 30 H 1.08999 * 109.47423 * 305.09073 * 8 6 5 31 31 H 1.08991 * 109.47394 * 185.08448 * 8 6 5 32 32 H 1.00907 * 111.00029 * 303.95634 * 9 8 6 33 33 H 1.08994 * 109.47346 * 60.00149 * 10 9 8 34 34 H 1.08998 * 109.47279 * 299.99821 * 10 9 8 35 35 H 0.97000 * 120.00140 * 0.02562 * 13 11 10 36 36 H 0.97004 * 119.99542 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.50777 * 62.45786 * 22 2 1 38 38 H 1.09001 * 109.54567 * 302.34933 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3263 0.0604 5 8 4.0184 0.5570 -1.0396 6 6 3.5250 -0.7850 -1.0707 7 1 3.8386 -1.3091 -0.1679 8 6 4.0826 -1.5059 -2.2997 9 7 5.5406 -1.6330 -2.1732 10 6 6.1121 -2.3215 -3.3382 11 6 7.6059 -2.4324 -3.1733 12 8 8.1419 -1.9819 -2.1829 13 7 8.3464 -3.0323 -4.1263 14 6 9.7054 -3.1338 -3.9760 15 1 10.1826 -2.7325 -3.0941 16 6 10.4695 -3.7470 -4.9612 17 7 9.8889 -4.2347 -6.0346 18 14 12.3220 -3.8783 -4.7600 19 1 12.7256 -3.2559 -3.4737 20 1 12.7202 -5.3090 -4.7647 21 1 12.9928 -3.1742 -5.8822 22 6 1.9959 -0.7602 -1.1426 23 1 -0.3633 -1.0256 0.0652 24 1 -0.3633 0.5693 0.8556 25 1 -0.3633 0.4564 -0.9208 26 1 1.6828 1.8825 -0.9110 27 1 1.6127 1.9094 0.8677 28 1 3.9222 2.3398 0.0030 29 1 3.8385 0.8643 0.9965 30 1 3.8443 -0.9334 -3.1961 31 1 3.6365 -2.4976 -2.3727 32 1 5.9720 -0.7307 -2.0392 33 1 5.8878 -1.7543 -4.2415 34 1 5.6800 -3.3189 -3.4189 35 1 7.9179 -3.3923 -4.9186 36 1 10.4223 -4.6632 -6.7222 37 1 1.6829 -0.2843 -2.0719 38 1 1.6135 -1.7804 -1.1094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082618979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:46 Heat of formation + Delta-G solvation = -100.268283 kcal Electronic energy + Delta-G solvation = -19029.802451 eV Core-core repulsion = 15906.125131 eV Total energy + Delta-G solvation = -3123.677320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72317 -40.08680 -37.11643 -36.37336 -35.80077 -33.30367 -32.68402 -29.99391 -28.78859 -26.81529 -25.24578 -24.86530 -22.79257 -21.46440 -21.02708 -19.90817 -17.96513 -17.62894 -17.20419 -16.87118 -16.42957 -16.28785 -15.94341 -15.79993 -15.75013 -15.05684 -14.80033 -14.61935 -14.38220 -13.61798 -13.44045 -13.24156 -13.11334 -12.90747 -12.87246 -12.75634 -12.40846 -12.29184 -12.11413 -12.05461 -11.52926 -11.51030 -10.62600 -10.34990 -10.01550 -9.42989 -9.34001 -8.46718 -5.95495 1.37017 1.42099 1.56775 2.04926 2.29413 2.68132 2.80473 3.02944 3.20413 3.51031 3.92283 3.94798 4.00330 4.11620 4.23832 4.31860 4.36262 4.46190 4.52283 4.55885 4.61703 4.63695 4.67650 4.69008 4.83146 4.94444 4.99204 5.05058 5.41294 5.85253 5.91027 5.96316 6.09330 6.23582 6.36278 6.60426 7.12743 7.55954 8.11735 8.71051 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.060910 B = 0.003212 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.584956 B = 8714.652233 C = 9027.117124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.021 3.979 4 C 0.058 3.942 5 O -0.404 6.404 6 C 0.097 3.903 7 H 0.061 0.939 8 C 0.071 3.929 9 N -0.682 5.682 10 C 0.064 3.936 11 C 0.437 3.563 12 O -0.624 6.624 13 N -0.573 5.573 14 C -0.334 4.334 15 H 0.078 0.922 16 C -0.013 4.013 17 N -0.920 5.920 18 Si 0.994 3.006 19 H -0.274 1.274 20 H -0.270 1.270 21 H -0.270 1.270 22 C 0.032 3.968 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.029 0.971 26 H 0.040 0.960 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.345 0.655 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.043 0.957 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.012 7.693 6.757 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.282 5.282 3 C -0.107 4.107 4 C -0.018 4.018 5 O -0.323 6.323 6 C 0.039 3.961 7 H 0.079 0.921 8 C -0.058 4.058 9 N -0.314 5.314 10 C -0.068 4.068 11 C 0.225 3.775 12 O -0.511 6.511 13 N -0.210 5.210 14 C -0.463 4.463 15 H 0.096 0.904 16 C -0.213 4.213 17 N -0.562 5.562 18 Si 0.817 3.183 19 H -0.199 1.199 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.097 4.097 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.345 7.166 7.919 22.097 hybrid contribution 0.299 0.703 -1.615 1.786 sum -19.046 7.868 6.304 21.550 Atomic orbital electron populations 1.22435 0.85332 1.03241 1.01217 1.62192 1.09607 1.13947 1.42467 1.22809 0.95836 0.89720 1.02315 1.22804 0.92882 0.96769 0.89391 1.87963 1.70857 1.24193 1.49333 1.22165 0.92345 0.82935 0.98652 0.92107 1.22036 0.87310 1.00675 0.95774 1.60095 1.04313 1.27148 1.39846 1.21558 0.90465 1.01706 0.93066 1.20890 0.90243 0.82466 0.83939 1.90494 1.74646 1.53623 1.32299 1.41930 1.07130 1.51813 1.20150 1.19707 0.83390 1.37167 1.06079 0.90445 1.26053 1.04920 0.95809 0.94511 1.69681 1.38284 1.38866 1.09320 0.84858 0.76764 0.78358 0.78271 1.19867 1.19473 1.19516 1.22682 0.94336 1.00440 0.92196 0.90391 0.90110 0.95260 0.94177 0.87820 0.87070 0.92776 0.94038 0.87666 0.83607 0.91678 0.87218 0.76891 0.91262 0.93859 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.60 127.69 1.23 1.54 16 2 N -0.56 -9.90 4.98 -921.48 -4.59 -14.50 16 3 C 0.02 0.35 5.66 86.31 0.49 0.84 16 4 C 0.06 1.18 7.01 72.01 0.50 1.69 16 5 O -0.40 -10.90 10.00 -148.98 -1.49 -12.39 16 6 C 0.10 2.36 3.04 30.63 0.09 2.46 16 7 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 8 C 0.07 1.79 5.39 86.30 0.47 2.26 16 9 N -0.68 -23.55 6.13 -517.95 -3.17 -26.73 16 10 C 0.06 2.31 6.17 85.56 0.53 2.84 16 11 C 0.44 21.70 7.82 87.66 0.69 22.39 16 12 O -0.62 -36.28 15.78 -3.07 -0.05 -36.33 16 13 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 14 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 15 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 16 C -0.01 -0.72 5.50 84.92 0.47 -0.26 16 17 N -0.92 -50.30 13.05 21.66 0.28 -50.01 16 18 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 C 0.03 0.60 4.95 86.32 0.43 1.03 16 23 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 32 H 0.35 13.30 7.99 -89.69 -0.72 12.58 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.40 19.75 7.90 -92.71 -0.73 19.01 16 36 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -70.06 316.26 -3.31 -73.37 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -0.39 Total: 36.63 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 5.70 Total: 16.16 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -9.11 Total: -123.10 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -1.54 Total: -48.72 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.06 -3.31 -73.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082618979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.901 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds